Wall clock time and date at job start Tue Mar 31 2020 22:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.45086 * 2 1 4 4 C 1.53042 * 109.45605 * 240.02984 * 2 1 3 5 5 C 1.53186 * 109.31790 * 301.35015 * 4 2 1 6 6 N 1.46932 * 108.77291 * 305.36318 * 5 4 2 7 7 C 1.34766 * 120.63077 * 233.58597 * 6 5 4 8 8 O 1.21561 * 120.00246 * 183.81921 * 7 6 5 9 9 C 1.47860 * 120.00369 * 3.81345 * 7 6 5 10 10 C 1.39549 * 120.11940 * 129.23069 * 9 7 6 11 11 C 1.38210 * 119.87445 * 180.02562 * 10 9 7 12 12 F 1.35091 * 119.93761 * 179.97438 * 11 10 9 13 13 C 1.38533 * 120.11926 * 0.02562 * 11 10 9 14 14 C 1.38524 * 120.24611 * 359.97438 * 13 11 10 15 15 F 1.35103 * 119.94028 * 179.97438 * 14 13 11 16 16 C 1.38202 * 120.12173 * 0.02562 * 14 13 11 17 17 C 1.46929 * 118.73558 * 53.86291 * 6 5 4 18 18 C 1.53045 * 109.45903 * 119.96944 * 2 1 3 19 19 H 1.08997 * 109.49801 * 178.60389 * 18 2 1 20 20 C 1.52999 * 109.49302 * 298.70013 * 18 2 1 21 21 N 1.46503 * 109.47125 * 185.00264 * 20 18 2 22 22 C 1.36930 * 120.00280 * 180.02562 * 21 20 18 23 23 H 1.08003 * 120.00321 * 359.97438 * 22 21 20 24 24 C 1.38819 * 120.00111 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99748 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 119.99937 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47170 * 89.99831 * 26 24 22 28 28 H 1.48492 * 109.47205 * 210.00176 * 26 24 22 29 29 H 1.48503 * 109.47084 * 330.00573 * 26 24 22 30 30 H 1.08998 * 109.47744 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46637 * 299.97035 * 1 2 3 32 32 H 1.09006 * 109.46860 * 59.96454 * 1 2 3 33 33 H 1.08998 * 109.49416 * 181.39237 * 4 2 1 34 34 H 1.09003 * 109.51924 * 61.31676 * 4 2 1 35 35 H 1.09002 * 109.58792 * 185.57860 * 5 4 2 36 36 H 1.08998 * 109.70276 * 65.22097 * 5 4 2 37 37 H 1.07997 * 120.06505 * 0.04974 * 10 9 7 38 38 H 1.08002 * 119.87430 * 179.72478 * 13 11 10 39 39 H 1.08009 * 120.06043 * 180.02562 * 16 14 13 40 40 H 1.08996 * 109.58731 * 65.92517 * 17 6 5 41 41 H 1.09000 * 109.58521 * 186.35010 * 17 6 5 42 42 H 1.09005 * 109.47258 * 304.99962 * 20 18 2 43 43 H 1.08999 * 109.47695 * 64.99922 * 20 18 2 44 44 H 0.97002 * 119.99621 * 359.97438 * 21 20 18 45 45 H 0.97004 * 119.99627 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2501 5 6 1.4994 -2.1542 -1.2643 6 7 1.8624 -2.8089 0.0000 7 6 2.5154 -3.9878 0.0000 8 8 2.7488 -4.5534 1.0504 9 6 2.9479 -4.5935 -1.2777 10 6 4.2670 -5.0189 -1.4399 11 6 4.6660 -5.5838 -2.6365 12 9 5.9428 -5.9956 -2.7951 13 6 3.7591 -5.7276 -3.6739 14 6 2.4485 -5.3071 -3.5182 15 9 1.5694 -5.4498 -4.5342 16 6 2.0387 -4.7408 -2.3260 17 6 1.4945 -2.1569 1.2642 18 6 2.0399 -0.7208 1.2501 19 1 3.1296 -0.7430 1.2383 20 6 1.5569 0.0194 2.4990 21 7 2.1424 -0.5998 3.6907 22 6 1.8510 -0.1038 4.9333 23 1 1.1899 0.7441 5.0349 24 6 2.4054 -0.6909 6.0625 25 7 2.1256 -0.2138 7.2568 26 14 3.5482 -2.1580 5.8868 27 1 4.9482 -1.6814 5.7515 28 1 3.4333 -3.0217 7.0892 29 1 3.1718 -2.9370 4.6799 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5144 -0.8897 33 1 3.1295 -0.7429 -1.2383 34 1 1.6962 -0.1937 -2.1401 35 1 1.9380 -2.7018 -2.0985 36 1 0.4146 -2.1369 -1.3686 37 1 4.9748 -4.9072 -0.6318 38 1 4.0763 -6.1656 -4.6088 39 1 1.0164 -4.4136 -2.2056 40 1 0.4092 -2.1376 1.3631 41 1 1.9298 -2.7064 2.0989 42 1 1.8643 1.0637 2.4440 43 1 0.4699 -0.0368 2.5571 44 1 2.7359 -1.3617 3.5994 45 1 2.5133 -0.6238 8.0458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133298480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:09 Heat of formation + Delta-G solvation = -81.004260 kcal Electronic energy + Delta-G solvation = -29765.427184 eV Core-core repulsion = 25419.343186 eV Total energy + Delta-G solvation = -4346.083999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.52185 -49.47555 -40.98677 -39.12179 -37.91790 -35.23666 -33.77194 -32.14149 -31.65427 -30.96827 -30.20138 -27.88316 -26.31449 -25.27820 -23.83193 -23.41728 -22.89520 -21.19208 -20.57989 -18.94810 -18.10770 -17.74664 -17.47396 -17.12504 -16.76970 -16.44809 -16.18802 -16.02121 -15.79310 -15.22343 -15.16777 -15.00112 -14.79672 -14.30869 -13.95740 -13.76198 -13.59404 -13.27397 -13.03169 -12.74214 -12.63399 -12.56406 -12.48457 -12.35759 -11.97065 -11.80884 -11.56826 -11.26720 -11.13305 -10.88646 -10.75505 -10.43672 -10.26337 -10.14965 -9.98024 -9.58504 -9.54431 -9.29266 -8.88404 -8.70873 -7.21258 -5.74701 -3.10431 0.15576 0.38733 2.26635 2.59559 2.90761 3.31179 3.43277 3.49996 3.51900 3.83049 3.90948 4.19193 4.33170 4.41839 4.53871 4.63415 4.67177 4.71432 4.89461 4.98621 5.08873 5.18206 5.19762 5.32873 5.34610 5.41505 5.46929 5.51129 5.54115 5.57896 5.62671 5.71002 5.74049 5.83692 5.92372 6.12093 6.14530 6.17011 6.21645 6.33121 6.39384 6.62912 6.73892 7.16418 7.88588 8.00619 8.44204 9.23121 9.95930 10.14832 11.43534 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013616 B = 0.003266 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.942419 B = 8570.282809 C =10004.455706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.085 4.085 3 H 0.077 0.923 4 C -0.129 4.129 5 C 0.092 3.908 6 N -0.599 5.599 7 C 0.555 3.445 8 O -0.517 6.517 9 C -0.058 4.058 10 C -0.117 4.117 11 C 0.132 3.868 12 F -0.125 7.125 13 C -0.176 4.176 14 C 0.129 3.871 15 F -0.126 7.126 16 C -0.139 4.139 17 C 0.117 3.883 18 C -0.106 4.106 19 H 0.074 0.926 20 C 0.165 3.835 21 N -0.757 5.757 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.934 5.934 26 Si 0.879 3.121 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.273 1.273 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.031 0.969 43 H 0.032 0.968 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.090 -7.372 -28.429 29.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.104 4.104 3 H 0.095 0.905 4 C -0.167 4.167 5 C -0.030 4.030 6 N -0.331 5.331 7 C 0.341 3.659 8 O -0.393 6.393 9 C -0.062 4.062 10 C -0.136 4.136 11 C 0.113 3.887 12 F -0.104 7.104 13 C -0.196 4.196 14 C 0.110 3.890 15 F -0.105 7.105 16 C -0.158 4.158 17 C -0.004 4.004 18 C -0.126 4.126 19 H 0.093 0.907 20 C 0.037 3.963 21 N -0.403 5.403 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.582 5.582 26 Si 0.709 3.291 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.198 1.198 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.169 0.831 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.065 -7.548 -27.705 28.715 hybrid contribution 0.943 -1.131 -0.262 1.496 sum 0.878 -8.678 -27.967 29.296 Atomic orbital electron populations 1.22006 0.95001 1.02003 1.02144 1.21072 0.96198 0.99552 0.93539 0.90455 1.21947 1.01245 0.94782 0.98719 1.22145 1.00758 0.94191 0.85915 1.48099 1.56227 1.20395 1.08374 1.18086 0.78427 0.81315 0.88057 1.90896 1.55270 1.61106 1.32002 1.19567 0.93463 0.99116 0.94008 1.21232 0.96365 0.98804 0.97222 1.17070 0.79504 0.98211 0.93947 1.91570 1.35112 1.87786 1.95890 1.21184 0.92307 1.05080 1.01051 1.17038 0.86854 0.99728 0.85415 1.91569 1.67613 1.93521 1.57766 1.21370 1.01627 1.01436 0.91377 1.21954 1.00527 0.92963 0.84980 1.21838 1.00896 0.94193 0.95678 0.90720 1.20668 0.96411 0.95001 0.84218 1.42775 1.57536 1.37384 1.02602 1.19030 1.24346 1.12245 0.81861 0.89215 1.24655 1.00169 0.99010 0.95109 1.69703 1.48252 1.43215 0.97048 0.86620 0.81500 0.83675 0.77284 1.21125 1.21660 1.19839 0.92489 0.91528 0.92931 0.91404 0.90535 0.89449 0.90471 0.82985 0.82895 0.83085 0.90471 0.88298 0.95152 0.95034 0.80569 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.12 37.16 0.30 -1.19 16 2 C -0.08 -0.89 2.71 -90.57 -0.25 -1.13 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 4 C -0.13 -1.07 5.62 -26.61 -0.15 -1.22 16 5 C 0.09 0.77 4.90 -3.71 -0.02 0.75 16 6 N -0.60 -7.22 2.97 -173.61 -0.51 -7.74 16 7 C 0.55 7.55 7.23 -12.33 -0.09 7.46 16 8 O -0.52 -9.42 16.47 5.31 0.09 -9.33 16 9 C -0.06 -0.59 5.00 -104.98 -0.53 -1.12 16 10 C -0.12 -1.14 9.72 -39.10 -0.38 -1.52 16 11 C 0.13 1.13 7.29 -39.48 -0.29 0.85 16 12 F -0.13 -1.15 17.26 2.25 0.04 -1.11 16 13 C -0.18 -1.27 10.00 -39.37 -0.39 -1.66 16 14 C 0.13 0.97 7.29 -39.49 -0.29 0.68 16 15 F -0.13 -0.98 17.26 2.25 0.04 -0.94 16 16 C -0.14 -1.11 7.34 -39.11 -0.29 -1.39 16 17 C 0.12 1.72 5.07 -3.49 -0.02 1.70 16 18 C -0.11 -1.52 2.16 -90.27 -0.20 -1.72 16 19 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 20 C 0.16 3.01 5.18 -4.04 -0.02 2.99 16 21 N -0.76 -17.94 5.18 -59.90 -0.31 -18.25 16 22 C -0.25 -6.97 10.47 -15.06 -0.16 -7.13 16 23 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 24 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 25 N -0.93 -29.75 13.97 55.49 0.78 -28.97 16 26 Si 0.88 22.92 27.74 -169.99 -4.71 18.21 16 27 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 29 H -0.27 -6.88 6.52 56.52 0.37 -6.51 16 30 H 0.06 0.54 4.97 -51.93 -0.26 0.28 16 31 H 0.07 0.73 6.57 -51.93 -0.34 0.39 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.60 4.55 -51.93 -0.24 0.36 16 36 H 0.08 0.55 6.70 -51.93 -0.35 0.20 16 37 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 38 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.15 0.98 7.07 -52.48 -0.37 0.61 16 40 H 0.08 1.08 6.69 -51.93 -0.35 0.74 16 41 H 0.10 1.84 6.25 -51.93 -0.32 1.51 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.03 0.58 6.73 -51.93 -0.35 0.23 16 44 H 0.36 8.59 4.78 -40.82 -0.19 8.40 16 45 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -33.72 360.83 -7.76 -41.47 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.74 Total: 4.79 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.85 Total: -3.56 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.05 Total: -54.96 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.08 Total: -2.06 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.71 Total: 18.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.72 -7.76 -41.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133298480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.533 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds