Wall clock time and date at job start Tue Mar 31 2020 22:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.45086 * 2 1 4 4 C 1.53042 * 109.45605 * 240.02984 * 2 1 3 5 5 C 1.53186 * 109.31790 * 301.35015 * 4 2 1 6 6 N 1.46932 * 108.77291 * 305.36318 * 5 4 2 7 7 C 1.34766 * 120.63077 * 233.58597 * 6 5 4 8 8 O 1.21561 * 120.00246 * 183.81921 * 7 6 5 9 9 C 1.47860 * 120.00369 * 3.81345 * 7 6 5 10 10 C 1.39549 * 120.11940 * 129.23069 * 9 7 6 11 11 C 1.38210 * 119.87445 * 180.02562 * 10 9 7 12 12 F 1.35091 * 119.93761 * 179.97438 * 11 10 9 13 13 C 1.38533 * 120.11926 * 0.02562 * 11 10 9 14 14 C 1.38524 * 120.24611 * 359.97438 * 13 11 10 15 15 F 1.35103 * 119.94028 * 179.97438 * 14 13 11 16 16 C 1.38202 * 120.12173 * 0.02562 * 14 13 11 17 17 C 1.46929 * 118.73558 * 53.86291 * 6 5 4 18 18 C 1.53045 * 109.45903 * 119.96944 * 2 1 3 19 19 H 1.08997 * 109.49801 * 178.60389 * 18 2 1 20 20 C 1.52999 * 109.49302 * 298.70013 * 18 2 1 21 21 N 1.46503 * 109.47125 * 185.00264 * 20 18 2 22 22 C 1.36930 * 120.00280 * 180.02562 * 21 20 18 23 23 H 1.08003 * 120.00321 * 359.97438 * 22 21 20 24 24 C 1.38819 * 120.00111 * 179.97438 * 22 21 20 25 25 N 1.31618 * 119.99748 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 119.99937 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47170 * 89.99831 * 26 24 22 28 28 H 1.48492 * 109.47205 * 210.00176 * 26 24 22 29 29 H 1.48503 * 109.47084 * 330.00573 * 26 24 22 30 30 H 1.08998 * 109.47744 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46637 * 299.97035 * 1 2 3 32 32 H 1.09006 * 109.46860 * 59.96454 * 1 2 3 33 33 H 1.08998 * 109.49416 * 181.39237 * 4 2 1 34 34 H 1.09003 * 109.51924 * 61.31676 * 4 2 1 35 35 H 1.09002 * 109.58792 * 185.57860 * 5 4 2 36 36 H 1.08998 * 109.70276 * 65.22097 * 5 4 2 37 37 H 1.07997 * 120.06505 * 0.04974 * 10 9 7 38 38 H 1.08002 * 119.87430 * 179.72478 * 13 11 10 39 39 H 1.08009 * 120.06043 * 180.02562 * 16 14 13 40 40 H 1.08996 * 109.58731 * 65.92517 * 17 6 5 41 41 H 1.09000 * 109.58521 * 186.35010 * 17 6 5 42 42 H 1.09005 * 109.47258 * 304.99962 * 20 18 2 43 43 H 1.08999 * 109.47695 * 64.99922 * 20 18 2 44 44 H 0.97002 * 119.99621 * 359.97438 * 21 20 18 45 45 H 0.97004 * 119.99627 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2501 5 6 1.4994 -2.1542 -1.2643 6 7 1.8624 -2.8089 0.0000 7 6 2.5154 -3.9878 0.0000 8 8 2.7488 -4.5534 1.0504 9 6 2.9479 -4.5935 -1.2777 10 6 4.2670 -5.0189 -1.4399 11 6 4.6660 -5.5838 -2.6365 12 9 5.9428 -5.9956 -2.7951 13 6 3.7591 -5.7276 -3.6739 14 6 2.4485 -5.3071 -3.5182 15 9 1.5694 -5.4498 -4.5342 16 6 2.0387 -4.7408 -2.3260 17 6 1.4945 -2.1569 1.2642 18 6 2.0399 -0.7208 1.2501 19 1 3.1296 -0.7430 1.2383 20 6 1.5569 0.0194 2.4990 21 7 2.1424 -0.5998 3.6907 22 6 1.8510 -0.1038 4.9333 23 1 1.1899 0.7441 5.0349 24 6 2.4054 -0.6909 6.0625 25 7 2.1256 -0.2138 7.2568 26 14 3.5482 -2.1580 5.8868 27 1 4.9482 -1.6814 5.7515 28 1 3.4333 -3.0217 7.0892 29 1 3.1718 -2.9370 4.6799 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8903 32 1 -0.3633 0.5144 -0.8897 33 1 3.1295 -0.7429 -1.2383 34 1 1.6962 -0.1937 -2.1401 35 1 1.9380 -2.7018 -2.0985 36 1 0.4146 -2.1369 -1.3686 37 1 4.9748 -4.9072 -0.6318 38 1 4.0763 -6.1656 -4.6088 39 1 1.0164 -4.4136 -2.2056 40 1 0.4092 -2.1376 1.3631 41 1 1.9298 -2.7064 2.0989 42 1 1.8643 1.0637 2.4440 43 1 0.4699 -0.0368 2.5571 44 1 2.7359 -1.3617 3.5994 45 1 2.5133 -0.6238 8.0458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133298480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:08 Heat of formation + Delta-G solvation = -101.968688 kcal Electronic energy + Delta-G solvation = -29766.336270 eV Core-core repulsion = 25419.343186 eV Total energy + Delta-G solvation = -4346.993084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.15693 -50.10410 -41.93095 -39.98526 -38.90726 -36.83391 -35.04472 -33.68575 -32.67259 -31.80153 -31.46493 -28.81134 -27.66893 -26.27419 -24.70206 -24.61246 -23.95912 -22.58657 -21.55355 -20.14326 -19.30229 -18.93835 -18.44223 -17.87473 -17.51892 -17.14731 -17.05700 -16.80949 -16.76792 -16.42455 -16.16853 -16.10171 -15.91532 -15.45109 -15.24286 -15.04506 -14.63832 -14.55189 -14.32295 -13.91897 -13.82394 -13.47823 -13.33570 -13.17879 -13.06555 -12.98782 -12.77414 -12.65890 -12.44093 -12.25452 -12.03987 -11.88554 -11.75484 -11.45786 -11.30471 -11.08894 -11.00685 -10.27349 -9.94468 -9.71370 -9.31404 -8.07224 -5.38825 -0.52865 -0.26224 1.32180 1.32475 1.35745 1.41799 1.69539 2.15164 2.42503 2.64306 3.11345 3.20111 3.25078 3.50035 3.57540 3.72177 3.73964 3.79118 3.81270 3.96074 4.04101 4.21303 4.24652 4.35154 4.48213 4.53739 4.55780 4.66445 4.71878 4.75095 4.76065 4.78103 4.84208 4.90109 4.99250 5.07482 5.15327 5.23240 5.29179 5.36944 5.42846 5.49732 5.60527 5.73346 6.17942 6.20576 6.87708 7.04123 7.81759 7.97904 9.14470 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013616 B = 0.003266 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.942419 B = 8570.282809 C =10004.455706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.080 4.080 3 H 0.082 0.918 4 C -0.123 4.123 5 C 0.086 3.914 6 N -0.592 5.592 7 C 0.552 3.448 8 O -0.576 6.576 9 C -0.069 4.069 10 C -0.125 4.125 11 C 0.128 3.872 12 F -0.130 7.130 13 C -0.158 4.158 14 C 0.135 3.865 15 F -0.123 7.123 16 C -0.125 4.125 17 C 0.121 3.879 18 C -0.095 4.095 19 H 0.061 0.939 20 C 0.161 3.839 21 N -0.762 5.762 22 C -0.229 4.229 23 H 0.064 0.936 24 C -0.057 4.057 25 N -0.980 5.980 26 Si 0.943 3.057 27 H -0.278 1.278 28 H -0.293 1.293 29 H -0.266 1.266 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.140 0.860 38 H 0.178 0.822 39 H 0.170 0.830 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.031 0.969 43 H 0.036 0.964 44 H 0.361 0.639 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.497 -7.884 -32.868 33.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 H 0.100 0.900 4 C -0.161 4.161 5 C -0.034 4.034 6 N -0.323 5.323 7 C 0.340 3.660 8 O -0.456 6.456 9 C -0.072 4.072 10 C -0.145 4.145 11 C 0.109 3.891 12 F -0.109 7.109 13 C -0.178 4.178 14 C 0.116 3.884 15 F -0.101 7.101 16 C -0.144 4.144 17 C -0.001 4.001 18 C -0.115 4.115 19 H 0.079 0.921 20 C 0.035 3.965 21 N -0.408 5.408 22 C -0.360 4.360 23 H 0.082 0.918 24 C -0.248 4.248 25 N -0.631 5.631 26 Si 0.771 3.229 27 H -0.204 1.204 28 H -0.219 1.219 29 H -0.191 1.191 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.158 0.842 38 H 0.196 0.804 39 H 0.188 0.812 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.194 0.806 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.488 -8.029 -32.237 33.225 hybrid contribution 0.996 -0.896 1.026 1.687 sum 0.508 -8.924 -31.210 32.465 Atomic orbital electron populations 1.21988 0.94012 1.02301 1.02605 1.21067 0.96934 0.99476 0.92393 0.90014 1.21944 1.00932 0.94571 0.98607 1.22513 1.02378 0.94143 0.84403 1.48148 1.55382 1.19948 1.08824 1.18601 0.77606 0.81269 0.88536 1.90859 1.57596 1.62821 1.34366 1.19193 0.94088 1.00784 0.93175 1.21189 0.96280 0.99370 0.97638 1.17023 0.79622 0.98568 0.93897 1.91561 1.35525 1.87890 1.95878 1.21402 0.91725 1.03364 1.01297 1.16937 0.86895 0.99418 0.85188 1.91590 1.67516 1.93450 1.57530 1.21447 1.01862 1.00496 0.90627 1.21675 1.00493 0.92680 0.85255 1.21706 1.00013 0.94001 0.95731 0.92055 1.20881 0.96391 0.95154 0.84089 1.42873 1.57729 1.37471 1.02691 1.19072 1.22392 1.10735 0.83788 0.91775 1.25345 1.02504 1.02092 0.94904 1.69850 1.50293 1.45144 0.97848 0.85590 0.79705 0.80438 0.77127 1.20416 1.21943 1.19099 0.92248 0.93421 0.90166 0.92001 0.87048 0.87402 0.88190 0.84245 0.80431 0.81240 0.89780 0.92636 0.95132 0.94565 0.80595 0.93289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.12 71.98 0.58 -1.89 16 2 C -0.08 -1.46 2.71 -10.76 -0.03 -1.49 16 3 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.12 -1.56 5.62 30.67 0.17 -1.39 16 5 C 0.09 1.12 4.90 86.36 0.42 1.54 16 6 N -0.59 -13.57 2.97 -821.46 -2.44 -16.01 16 7 C 0.55 14.91 7.23 86.79 0.63 15.54 16 8 O -0.58 -21.89 16.47 -3.91 -0.06 -21.96 16 9 C -0.07 -1.32 5.00 -20.10 -0.10 -1.42 16 10 C -0.12 -2.36 9.72 22.58 0.22 -2.14 16 11 C 0.13 1.96 7.29 22.33 0.16 2.12 16 12 F -0.13 -2.20 17.26 44.97 0.78 -1.43 16 13 C -0.16 -1.73 10.00 22.41 0.22 -1.51 16 14 C 0.14 1.53 7.29 22.33 0.16 1.69 16 15 F -0.12 -1.39 17.26 44.97 0.78 -0.62 16 16 C -0.13 -1.60 7.34 22.58 0.17 -1.43 16 17 C 0.12 3.57 5.07 86.51 0.44 4.00 16 18 C -0.09 -2.65 2.16 -10.57 -0.02 -2.68 16 19 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 20 C 0.16 5.92 5.18 86.38 0.45 6.37 16 21 N -0.76 -36.80 5.18 -343.44 -1.78 -38.58 16 22 C -0.23 -13.38 10.47 84.04 0.88 -12.50 16 23 H 0.06 4.02 8.06 -2.91 -0.02 4.00 16 24 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 25 N -0.98 -64.34 13.97 21.65 0.30 -64.04 16 26 Si 0.94 48.87 27.74 68.60 1.90 50.78 16 27 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 29 H -0.27 -13.32 6.52 99.48 0.65 -12.67 16 30 H 0.06 0.94 4.97 -2.39 -0.01 0.93 16 31 H 0.05 0.96 6.57 -2.38 -0.02 0.95 16 32 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.11 1.01 4.55 -2.39 -0.01 1.00 16 36 H 0.10 0.93 6.70 -2.39 -0.02 0.91 16 37 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 38 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 39 H 0.17 1.51 7.07 -2.91 -0.02 1.49 16 40 H 0.08 2.32 6.69 -2.39 -0.02 2.30 16 41 H 0.06 2.14 6.25 -2.39 -0.01 2.13 16 42 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.04 1.32 6.73 -2.39 -0.02 1.31 16 44 H 0.36 17.49 4.78 -92.71 -0.44 17.05 16 45 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 Total: -1.00 -76.98 360.83 4.84 -72.14 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.54 Total: 17.88 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 4.82 Total: 1.83 kcal Atomic # 7 Polarization: -114.71 SS G_CDS: -3.91 Total: -118.63 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.06 Total: -21.96 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 1.55 Total: -2.04 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 1.90 Total: 50.78 kcal Total: -76.98 4.84 -72.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133298480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.832 kcal (2) G-P(sol) polarization free energy of solvation -76.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds