Wall clock time and date at job start Tue Mar 31 2020 21:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.53484 * 2 1 4 4 C 1.53097 * 109.48738 * 239.91460 * 2 1 3 5 5 C 1.53121 * 109.15699 * 182.40028 * 4 2 1 6 6 C 1.53036 * 109.27547 * 57.64880 * 5 4 2 7 7 N 1.46844 * 109.52827 * 300.82517 * 6 5 4 8 8 C 1.38617 * 111.00013 * 185.84048 * 7 6 5 9 9 C 1.39219 * 120.48720 * 68.25138 * 8 7 6 10 10 C 1.39095 * 118.26296 * 179.80420 * 9 8 7 11 11 N 1.38840 * 120.48303 * 180.21085 * 10 9 8 12 12 C 1.38443 * 119.99726 * 6.87329 * 11 10 9 13 13 C 1.38944 * 119.99978 * 59.63619 * 12 11 10 14 14 H 1.08005 * 119.99386 * 200.04805 * 13 12 11 15 15 C 1.40858 * 120.00398 * 20.04586 * 13 12 11 16 16 N 1.30325 * 119.99704 * 10.76664 * 15 13 12 17 17 Si 1.86797 * 120.00246 * 190.76349 * 15 13 12 18 18 H 1.48504 * 109.46866 * 60.00282 * 17 15 13 19 19 H 1.48495 * 109.47333 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47203 * 300.00411 * 17 15 13 21 21 C 1.41131 * 119.99675 * 239.63881 * 12 11 10 22 22 C 1.43203 * 119.99669 * 174.93061 * 21 12 11 23 23 N 9.21318 * 171.47748 * 92.33326 * 2 1 3 24 24 C 1.43201 * 120.00191 * 354.92802 * 21 12 11 25 25 N 9.66389 * 147.65226 * 138.86689 * 2 1 3 26 26 N 1.33191 * 119.03469 * 0.46791 * 10 9 8 27 27 C 1.31711 * 120.88719 * 359.74957 * 26 10 9 28 28 N 1.31764 * 121.91374 * 0.02562 * 27 26 10 29 29 C 1.46852 * 111.19940 * 61.73939 * 7 6 5 30 30 H 1.09002 * 109.47070 * 299.89369 * 1 2 3 31 31 H 1.09000 * 109.47012 * 59.89555 * 1 2 3 32 32 H 1.08994 * 109.47506 * 179.89485 * 1 2 3 33 33 H 1.08999 * 109.52964 * 62.49372 * 4 2 1 34 34 H 1.09003 * 109.58028 * 302.33131 * 4 2 1 35 35 H 1.09000 * 109.49813 * 297.71379 * 5 4 2 36 36 H 1.08993 * 109.50604 * 177.59139 * 5 4 2 37 37 H 1.09001 * 109.46177 * 180.80400 * 6 5 4 38 38 H 1.08997 * 109.45084 * 60.83891 * 6 5 4 39 39 H 1.07990 * 120.86825 * 359.97438 * 9 8 7 40 40 H 0.96994 * 120.00148 * 186.86327 * 11 10 9 41 41 H 0.97001 * 119.99853 * 184.97168 * 16 15 13 42 42 H 1.07998 * 119.03985 * 180.02562 * 27 26 10 43 43 H 1.08998 * 109.45504 * 58.27862 * 29 7 6 44 44 H 1.08992 * 109.46108 * 178.25482 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0272 0.0000 4 6 2.0407 -0.7235 -1.2488 5 6 3.5707 -0.7717 -1.2112 6 6 4.0227 -1.4729 0.0718 7 7 3.5092 -0.7423 1.2375 8 6 4.0077 -1.2744 2.4164 9 6 5.3584 -1.1524 2.7309 10 6 5.8080 -1.7001 3.9278 11 7 7.1449 -1.6012 4.2893 12 6 8.0123 -0.8342 3.5303 13 6 7.7715 0.5236 3.3601 14 1 8.2283 1.0540 2.5376 15 6 6.9317 1.2083 4.2602 16 7 6.5500 0.6297 5.3638 17 14 6.3654 2.9455 3.8720 18 1 5.6012 2.9440 2.5987 19 1 5.4971 3.4401 4.9704 20 1 7.5482 3.8335 3.7384 21 6 9.1409 -1.4316 2.9294 22 6 9.9776 -0.6643 2.0566 23 7 10.6415 -0.0556 1.3642 24 6 9.4495 -2.8050 3.1926 25 7 9.6942 -3.8945 3.4014 26 7 4.9385 -2.3252 4.7197 27 6 3.6685 -2.4238 4.3845 28 7 3.2028 -1.9147 3.2620 29 6 2.0409 -0.7235 1.2479 30 1 -0.3633 0.5122 0.8910 31 1 -0.3633 0.5155 -0.8890 32 1 -0.3634 -1.0276 -0.0019 33 1 1.7150 -0.1866 -2.1398 34 1 1.6448 -1.7388 -1.2703 35 1 3.9673 0.2434 -1.2301 36 1 3.9389 -1.3231 -2.0763 37 1 5.1118 -1.4962 0.1086 38 1 3.6371 -2.4923 0.0834 39 1 6.0387 -0.6434 2.0644 40 1 7.4711 -2.0694 5.0736 41 1 5.9148 1.0719 5.9486 42 1 2.9892 -2.9368 5.0492 43 1 1.6648 -1.7465 1.2542 44 1 1.6907 -0.2023 2.1388 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158214362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:10 Heat of formation + Delta-G solvation = 97.212412 kcal Electronic energy + Delta-G solvation = -29195.178736 eV Core-core repulsion = 25339.804729 eV Total energy + Delta-G solvation = -3855.374006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.08160 -40.17790 -39.05307 -37.13029 -36.56954 -35.93709 -35.18323 -33.58834 -32.78539 -31.65921 -30.82066 -28.87439 -27.55663 -25.95412 -25.17316 -23.69460 -22.79233 -22.50457 -20.82885 -20.50556 -19.15513 -19.07381 -18.28680 -17.80297 -16.78439 -16.51394 -16.16803 -16.00592 -15.64910 -15.40952 -15.38436 -15.11788 -14.79557 -14.70190 -14.57068 -14.39819 -13.98265 -13.92818 -13.53059 -13.43924 -13.41610 -13.36211 -13.10894 -12.86432 -12.82310 -12.74622 -12.65993 -12.33548 -12.00880 -11.96280 -11.75081 -11.60346 -11.50751 -11.35865 -11.21342 -10.97044 -10.16767 -10.05021 -9.51237 -9.32873 -8.66809 -7.18903 0.22656 0.28743 0.81586 1.32230 1.44713 1.51514 1.98733 2.03492 2.12447 2.21272 2.48701 2.54009 2.64526 3.10613 3.37389 3.46758 3.72716 3.77199 3.86696 3.93966 3.97875 4.15958 4.20752 4.36368 4.52056 4.53887 4.59317 4.61364 4.63693 4.71957 4.81846 4.83908 4.90494 4.95812 4.98786 5.12154 5.20143 5.24518 5.30895 5.35283 5.40958 5.53231 5.60792 5.74354 5.94352 6.02263 6.20862 6.29371 6.60844 6.82891 7.14792 7.31021 7.49055 7.62641 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.010053 B = 0.004294 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.478688 B = 6519.703332 C = 6767.356929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.112 4.112 5 C -0.113 4.113 6 C 0.062 3.938 7 N -0.482 5.482 8 C 0.363 3.637 9 C -0.289 4.289 10 C 0.473 3.527 11 N -0.630 5.630 12 C 0.375 3.625 13 C -0.363 4.363 14 H 0.111 0.889 15 C 0.051 3.949 16 N -0.719 5.719 17 Si 0.967 3.033 18 H -0.249 1.249 19 H -0.262 1.262 20 H -0.250 1.250 21 C -0.319 4.319 22 C 0.331 3.669 23 N -0.550 5.550 24 C 0.315 3.685 25 N -0.555 5.555 26 N -0.602 5.602 27 C 0.343 3.657 28 N -0.605 5.605 29 C 0.079 3.921 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.140 0.860 40 H 0.406 0.594 41 H 0.311 0.689 42 H 0.221 0.779 43 H 0.045 0.955 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.444 3.989 -5.165 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.064 4.064 7 N -0.201 5.201 8 C 0.128 3.872 9 C -0.320 4.320 10 C 0.232 3.768 11 N -0.253 5.253 12 C 0.270 3.730 13 C -0.390 4.390 14 H 0.129 0.871 15 C -0.181 4.181 16 N -0.336 5.336 17 Si 0.786 3.214 18 H -0.173 1.173 19 H -0.186 1.186 20 H -0.174 1.174 21 C -0.338 4.338 22 C 0.024 3.976 23 N -0.233 5.233 24 C 0.009 3.991 25 N -0.238 5.238 26 N -0.327 5.327 27 C 0.052 3.948 28 N -0.330 5.330 29 C -0.047 4.047 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.158 0.842 40 H 0.243 0.757 41 H 0.123 0.877 42 H 0.237 0.763 43 H 0.064 0.936 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.472 3.386 -5.250 17.617 hybrid contribution 0.300 0.224 0.521 0.642 sum -16.172 3.610 -4.729 17.232 Atomic orbital electron populations 1.21723 0.93272 1.02241 1.02415 1.21239 0.96526 0.99693 0.93515 0.91022 1.21656 0.94524 1.00898 0.97881 1.21625 0.96756 1.01534 0.95180 1.22268 1.00237 0.94957 0.88922 1.59153 1.11431 1.49511 0.99978 1.19849 0.89112 0.86816 0.91430 1.21658 0.97060 1.12490 1.00754 1.18052 0.84703 0.86448 0.87562 1.41119 1.04260 1.50011 1.29917 1.16665 0.84541 0.88600 0.83150 1.20433 1.18392 0.92191 1.07978 0.87070 1.26981 0.93378 1.05023 0.92725 1.69490 1.17615 1.40309 1.06213 0.85349 0.79930 0.75669 0.80502 1.17273 1.18558 1.17394 1.12847 1.07899 0.86539 1.26539 1.24729 0.90818 0.91560 0.90529 1.81063 1.13722 1.10968 1.17543 1.25291 0.91276 0.91689 0.90857 1.81068 1.12626 1.13405 1.16713 1.67898 1.04713 1.25232 1.34901 1.24949 0.88794 0.90588 0.90466 1.68410 1.39932 1.16751 1.07917 1.22002 0.83653 1.00085 0.98982 0.92667 0.91081 0.92420 0.89823 0.91783 0.91081 0.89280 0.90840 0.94162 0.84221 0.75689 0.87674 0.76287 0.93616 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.20 71.98 0.66 -1.31 16 2 C -0.09 -1.65 2.88 -10.75 -0.03 -1.69 16 3 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.11 -1.78 5.28 30.67 0.16 -1.62 16 5 C -0.11 -2.12 6.09 30.65 0.19 -1.93 16 6 C 0.06 1.54 5.34 86.33 0.46 2.00 16 7 N -0.48 -13.71 4.65 -701.66 -3.26 -16.97 16 8 C 0.36 12.08 6.12 132.99 0.81 12.89 16 9 C -0.29 -10.60 7.84 22.71 0.18 -10.42 16 10 C 0.47 17.98 6.13 132.87 0.81 18.79 16 11 N -0.63 -24.67 3.36 -184.42 -0.62 -25.29 16 12 C 0.37 15.15 5.01 38.98 0.20 15.35 16 13 C -0.36 -14.18 6.95 23.08 0.16 -14.02 16 14 H 0.11 4.38 7.00 -2.91 -0.02 4.35 16 15 C 0.05 1.84 4.69 85.56 0.40 2.24 16 16 N -0.72 -26.79 10.98 21.98 0.24 -26.54 16 17 Si 0.97 29.26 29.58 68.60 2.03 31.29 16 18 H -0.25 -7.69 7.11 99.48 0.71 -6.98 16 19 H -0.26 -7.61 7.11 99.48 0.71 -6.90 16 20 H -0.25 -7.56 7.11 99.48 0.71 -6.85 16 21 C -0.32 -13.67 5.88 -20.08 -0.12 -13.79 16 22 C 0.33 14.69 13.89 88.33 1.23 15.92 16 23 N -0.55 -25.32 18.54 19.01 0.35 -24.97 16 24 C 0.31 14.17 14.80 88.33 1.31 15.48 16 25 N -0.55 -26.12 18.54 19.00 0.35 -25.77 16 26 N -0.60 -21.58 10.47 -197.71 -2.07 -23.65 16 27 C 0.34 10.55 12.28 180.92 2.22 12.77 16 28 N -0.60 -19.24 8.97 -197.82 -1.78 -21.02 16 29 C 0.08 1.92 3.93 86.32 0.34 2.26 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 2.02 7.47 -2.39 -0.02 2.00 16 38 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.14 5.35 6.19 -2.92 -0.02 5.34 16 40 H 0.41 16.06 8.91 -92.71 -0.83 15.23 16 41 H 0.31 10.76 8.29 -92.71 -0.77 9.99 16 42 H 0.22 4.90 8.06 -2.91 -0.02 4.88 16 43 H 0.05 1.14 7.98 -2.39 -0.02 1.12 16 44 H 0.07 1.74 7.97 -2.39 -0.02 1.72 16 Total: -1.00 -51.05 377.87 4.46 -46.59 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: 0.23 Total: 33.42 kcal Atomic # 6 Polarization: 43.93 SS G_CDS: 8.98 Total: 52.91 kcal Atomic # 7 Polarization: -157.43 SS G_CDS: -6.78 Total: -164.21 kcal Atomic # 14 Polarization: 29.26 SS G_CDS: 2.03 Total: 31.29 kcal Total: -51.05 4.46 -46.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.800 kcal (2) G-P(sol) polarization free energy of solvation -51.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds