Wall clock time and date at job start Tue Mar 31 2020 21:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.53431 * 2 1 4 4 C 1.53115 * 109.50384 * 120.09870 * 2 1 3 5 5 C 1.53122 * 109.15948 * 177.59473 * 4 2 1 6 6 C 1.53034 * 109.28017 * 302.34801 * 5 4 2 7 7 N 1.46841 * 109.52409 * 59.17437 * 6 5 4 8 8 C 1.38624 * 111.00183 * 174.16182 * 7 6 5 9 9 C 1.39220 * 120.48821 * 289.54943 * 8 7 6 10 10 C 1.39086 * 118.26935 * 179.97438 * 9 8 7 11 11 N 1.38830 * 120.48529 * 179.97438 * 10 9 8 12 12 C 1.38443 * 119.99968 * 353.51072 * 11 10 9 13 13 C 1.38947 * 119.99913 * 299.76192 * 12 11 10 14 14 H 1.08000 * 119.99688 * 158.32239 * 13 12 11 15 15 C 1.40855 * 120.00169 * 338.32139 * 13 12 11 16 16 N 1.30329 * 120.00046 * 350.00068 * 15 13 12 17 17 Si 1.86795 * 120.00284 * 169.99930 * 15 13 12 18 18 H 1.48501 * 109.46998 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47419 * 120.00233 * 17 15 13 20 20 H 1.48501 * 109.47570 * 240.00414 * 17 15 13 21 21 C 1.41126 * 120.00070 * 119.76229 * 12 11 10 22 22 C 1.43201 * 120.00094 * 357.47838 * 21 12 11 23 23 N 9.45904 * 148.31712 * 219.85347 * 2 1 3 24 24 C 1.43196 * 120.00198 * 177.75381 * 21 12 11 25 25 N 9.38680 * 169.55681 * 276.92732 * 2 1 3 26 26 N 1.33188 * 119.03180 * 0.25628 * 10 9 8 27 27 C 1.31723 * 120.88821 * 359.47992 * 26 10 9 28 28 N 1.31767 * 121.90887 * 0.53247 * 27 26 10 29 29 C 1.46845 * 111.20380 * 298.26345 * 7 6 5 30 30 H 1.09004 * 109.46909 * 180.09642 * 1 2 3 31 31 H 1.09004 * 109.47300 * 300.09729 * 1 2 3 32 32 H 1.08999 * 109.47215 * 60.09394 * 1 2 3 33 33 H 1.08999 * 109.52753 * 297.50013 * 4 2 1 34 34 H 1.09006 * 109.52412 * 57.62766 * 4 2 1 35 35 H 1.08999 * 109.49920 * 62.28741 * 5 4 2 36 36 H 1.09001 * 109.50344 * 182.36395 * 5 4 2 37 37 H 1.09004 * 109.45750 * 299.16545 * 6 5 4 38 38 H 1.08998 * 109.46532 * 179.20043 * 6 5 4 39 39 H 1.08001 * 120.86213 * 359.95687 * 9 8 7 40 40 H 0.97000 * 120.00319 * 173.51371 * 11 10 9 41 41 H 0.97001 * 120.00438 * 185.03889 * 16 15 13 42 42 H 1.07992 * 119.04393 * 180.28914 * 27 26 10 43 43 H 1.08999 * 109.46597 * 181.75525 * 29 7 6 44 44 H 1.09000 * 109.45986 * 301.73426 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7238 1.2487 5 6 3.5712 -0.7719 1.2106 6 6 4.0230 -1.4729 -0.0725 7 7 3.5092 -0.7421 -1.2379 8 6 4.0074 -1.2740 -2.4171 9 6 5.3486 -1.1123 -2.7538 10 6 5.7994 -1.6655 -3.9476 11 7 7.1276 -1.5316 -4.3287 12 6 7.9826 -0.7322 -3.5893 13 6 7.7114 0.6223 -3.4393 14 1 8.1410 1.1708 -2.6141 15 6 6.8763 1.2799 -4.3635 16 7 6.5161 0.6761 -5.4609 17 14 6.2851 3.0175 -4.0163 18 1 6.8305 3.4748 -2.7130 19 1 6.7530 3.9244 -5.0950 20 1 4.8011 3.0344 -3.9645 21 6 9.1296 -1.2930 -2.9880 22 6 9.3805 -2.6987 -3.0971 23 7 9.5793 -3.8139 -3.1837 24 6 10.0395 -0.4575 -2.2638 25 7 10.7613 0.2052 -1.6890 26 7 4.9369 -2.3208 -4.7227 27 6 3.6760 -2.4566 -4.3667 28 7 3.2104 -1.9474 -3.2442 29 6 2.0409 -0.7233 -1.2481 30 1 -0.3633 -1.0277 0.0017 31 1 -0.3634 0.5154 0.8891 32 1 -0.3633 0.5124 -0.8908 33 1 1.7157 -0.1871 2.1398 34 1 1.6443 -1.7388 1.2695 35 1 3.9677 0.2432 1.2297 36 1 3.9396 -1.3228 2.0760 37 1 3.6374 -2.4924 -0.0844 38 1 5.1121 -1.4962 -0.1095 39 1 6.0213 -0.5712 -2.1049 40 1 7.4566 -1.9980 -5.1129 41 1 6.0021 1.1534 -6.1309 42 1 3.0034 -2.9977 -5.0157 43 1 1.6904 -0.2021 -2.1389 44 1 1.6647 -1.7463 -1.2543 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158214366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:13 Heat of formation + Delta-G solvation = 105.652431 kcal Electronic energy + Delta-G solvation = -29163.532856 eV Core-core repulsion = 25308.524836 eV Total energy + Delta-G solvation = -3855.008020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.76898 -39.02875 -37.57707 -35.44012 -34.85477 -34.74260 -33.75914 -32.38590 -31.58523 -30.36257 -29.36340 -27.25097 -26.70343 -24.85059 -23.84229 -22.45139 -21.64271 -21.18311 -19.73560 -19.09887 -17.74196 -17.55642 -16.93334 -16.30491 -15.46144 -15.29606 -14.88377 -14.75797 -14.48747 -14.34617 -14.23123 -13.80347 -13.74488 -13.53055 -13.06249 -12.86366 -12.65860 -12.62017 -12.36796 -11.99045 -11.89540 -11.87511 -11.75811 -11.71466 -11.60117 -11.22177 -11.10949 -10.98962 -10.96313 -10.79809 -10.52539 -10.46039 -10.42015 -10.30333 -10.09754 -9.68562 -8.77828 -8.54893 -8.18791 -7.88729 -7.16838 -5.54709 1.60595 1.72682 2.25115 2.67963 2.77016 2.82310 3.35938 3.53822 3.72395 3.82758 3.99739 4.13837 4.26817 4.46132 4.61826 4.66594 4.78287 4.83672 5.03622 5.07989 5.17138 5.29680 5.40306 5.42218 5.50894 5.53245 5.59460 5.66509 5.70578 5.77673 5.87010 5.94065 5.99008 6.04561 6.07655 6.13205 6.15740 6.21645 6.27848 6.35547 6.54591 6.84970 6.95989 7.09531 7.42636 7.50513 7.59252 7.75534 8.13255 8.32023 8.84033 8.91356 9.05846 9.12051 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.009990 B = 0.004302 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.128911 B = 6507.051073 C = 6826.995015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.078 0.922 4 C -0.116 4.116 5 C -0.117 4.117 6 C 0.062 3.938 7 N -0.476 5.476 8 C 0.360 3.640 9 C -0.272 4.272 10 C 0.482 3.518 11 N -0.627 5.627 12 C 0.375 3.625 13 C -0.371 4.371 14 H 0.115 0.885 15 C 0.070 3.930 16 N -0.713 5.713 17 Si 0.922 3.078 18 H -0.245 1.245 19 H -0.263 1.263 20 H -0.260 1.260 21 C -0.306 4.306 22 C 0.307 3.693 23 N -0.529 5.529 24 C 0.325 3.675 25 N -0.529 5.529 26 N -0.586 5.586 27 C 0.343 3.657 28 N -0.605 5.605 29 C 0.076 3.924 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.151 0.849 40 H 0.409 0.591 41 H 0.303 0.697 42 H 0.185 0.815 43 H 0.077 0.923 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.992 2.759 4.499 15.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.096 0.904 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.064 4.064 7 N -0.195 5.195 8 C 0.126 3.874 9 C -0.302 4.302 10 C 0.240 3.760 11 N -0.250 5.250 12 C 0.271 3.729 13 C -0.398 4.398 14 H 0.133 0.867 15 C -0.162 4.162 16 N -0.331 5.331 17 Si 0.744 3.256 18 H -0.168 1.168 19 H -0.187 1.187 20 H -0.185 1.185 21 C -0.324 4.324 22 C 0.000 4.000 23 N -0.211 5.211 24 C 0.017 3.983 25 N -0.211 5.211 26 N -0.311 5.311 27 C 0.051 3.949 28 N -0.330 5.330 29 C -0.052 4.052 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.169 0.831 40 H 0.247 0.753 41 H 0.115 0.885 42 H 0.202 0.798 43 H 0.096 0.904 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.082 2.146 4.660 14.988 hybrid contribution -0.249 0.506 -0.352 0.665 sum -14.332 2.652 4.308 15.198 Atomic orbital electron populations 1.21760 0.94891 1.01795 1.01689 1.21254 0.95260 1.00430 0.94419 0.90385 1.21666 0.95593 1.00488 0.97641 1.21616 0.95778 1.01946 0.96190 1.22200 1.00954 0.94799 0.88402 1.59154 1.10189 1.49883 1.00282 1.19597 0.89509 0.87690 0.90650 1.21738 0.96781 1.10870 1.00808 1.17949 0.84849 0.86082 0.87090 1.41236 1.04989 1.48475 1.30272 1.16700 0.84732 0.88173 0.83258 1.20380 1.18280 0.93037 1.08131 0.86690 1.26521 0.92777 1.02882 0.94002 1.69489 1.20344 1.38786 1.04472 0.85913 0.79941 0.78508 0.81285 1.16777 1.18710 1.18470 1.12868 1.04403 0.83318 1.31818 1.25191 0.91883 0.91797 0.91144 1.81085 1.11278 1.12520 1.16259 1.24625 0.91144 0.91918 0.90646 1.81074 1.12912 1.10056 1.17028 1.67851 1.04297 1.24312 1.34644 1.24178 0.88984 0.91690 0.90046 1.68283 1.40108 1.16371 1.08288 1.21968 0.85034 1.00189 0.97974 0.92729 0.92593 0.92563 0.91788 0.92190 0.90626 0.91011 0.94009 0.89517 0.83113 0.75281 0.88492 0.79841 0.90442 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.20 37.16 0.34 -0.87 16 2 C -0.09 -0.97 2.88 -90.54 -0.26 -1.23 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.12 -1.08 5.29 -26.61 -0.14 -1.22 16 5 C -0.12 -1.20 6.09 -26.65 -0.16 -1.36 16 6 C 0.06 0.80 5.35 -3.84 -0.02 0.78 16 7 N -0.48 -6.97 4.64 -173.13 -0.80 -7.78 16 8 C 0.36 6.12 6.07 -154.72 -0.94 5.18 16 9 C -0.27 -5.00 7.99 -38.90 -0.31 -5.31 16 10 C 0.48 9.22 6.28 -154.53 -0.97 8.25 16 11 N -0.63 -12.15 3.31 -9.65 -0.03 -12.19 16 12 C 0.38 7.51 4.99 -83.52 -0.42 7.09 16 13 C -0.37 -7.27 6.86 -38.33 -0.26 -7.53 16 14 H 0.12 2.27 7.10 -52.49 -0.37 1.90 16 15 C 0.07 1.31 4.81 -17.20 -0.08 1.23 16 16 N -0.71 -13.56 11.11 55.60 0.62 -12.95 16 17 Si 0.92 14.93 29.58 -169.99 -5.03 9.90 16 18 H -0.25 -4.00 7.11 56.52 0.40 -3.60 16 19 H -0.26 -4.19 7.11 56.52 0.40 -3.79 16 20 H -0.26 -4.33 7.11 56.52 0.40 -3.93 16 21 C -0.31 -6.44 5.89 -104.95 -0.62 -7.06 16 22 C 0.31 6.80 14.82 -22.47 -0.33 6.46 16 23 N -0.53 -12.29 18.54 41.84 0.78 -11.52 16 24 C 0.32 7.15 13.94 -22.47 -0.31 6.84 16 25 N -0.53 -12.14 18.54 41.84 0.78 -11.36 16 26 N -0.59 -10.78 10.47 -13.85 -0.14 -10.92 16 27 C 0.34 5.58 12.28 -92.24 -1.13 4.44 16 28 N -0.61 -10.08 9.00 -13.88 -0.12 -10.20 16 29 C 0.08 0.97 3.94 -3.84 -0.02 0.95 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.18 7.62 -51.93 -0.40 0.78 16 39 H 0.15 2.84 6.29 -52.49 -0.33 2.51 16 40 H 0.41 7.93 8.94 -40.82 -0.37 7.57 16 41 H 0.30 5.34 8.29 -40.82 -0.34 5.01 16 42 H 0.19 2.31 8.06 -52.49 -0.42 1.88 16 43 H 0.08 1.08 8.00 -51.93 -0.42 0.66 16 44 H 0.05 0.68 7.96 -51.93 -0.41 0.26 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -24.44 378.71 -9.55 -33.99 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.65 Total: 10.68 kcal Atomic # 6 Polarization: 22.28 SS G_CDS: -5.64 Total: 16.64 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: 1.06 Total: -76.92 kcal Atomic # 14 Polarization: 14.93 SS G_CDS: -5.03 Total: 9.90 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -24.44 -9.55 -33.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.644 kcal (2) G-P(sol) polarization free energy of solvation -24.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds