Wall clock time and date at job start Tue Mar 31 2020 21:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.53431 * 2 1 4 4 C 1.53115 * 109.50384 * 120.09870 * 2 1 3 5 5 C 1.53122 * 109.15948 * 177.59473 * 4 2 1 6 6 C 1.53034 * 109.28017 * 302.34801 * 5 4 2 7 7 N 1.46841 * 109.52409 * 59.17437 * 6 5 4 8 8 C 1.38624 * 111.00183 * 174.16182 * 7 6 5 9 9 C 1.39220 * 120.48821 * 289.54943 * 8 7 6 10 10 C 1.39086 * 118.26935 * 179.97438 * 9 8 7 11 11 N 1.38830 * 120.48529 * 179.97438 * 10 9 8 12 12 C 1.38443 * 119.99968 * 353.51072 * 11 10 9 13 13 C 1.38947 * 119.99913 * 299.76192 * 12 11 10 14 14 H 1.08000 * 119.99688 * 158.32239 * 13 12 11 15 15 C 1.40855 * 120.00169 * 338.32139 * 13 12 11 16 16 N 1.30329 * 120.00046 * 350.00068 * 15 13 12 17 17 Si 1.86795 * 120.00284 * 169.99930 * 15 13 12 18 18 H 1.48501 * 109.46998 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47419 * 120.00233 * 17 15 13 20 20 H 1.48501 * 109.47570 * 240.00414 * 17 15 13 21 21 C 1.41126 * 120.00070 * 119.76229 * 12 11 10 22 22 C 1.43201 * 120.00094 * 357.47838 * 21 12 11 23 23 N 9.45904 * 148.31712 * 219.85347 * 2 1 3 24 24 C 1.43196 * 120.00198 * 177.75381 * 21 12 11 25 25 N 9.38680 * 169.55681 * 276.92732 * 2 1 3 26 26 N 1.33188 * 119.03180 * 0.25628 * 10 9 8 27 27 C 1.31723 * 120.88821 * 359.47992 * 26 10 9 28 28 N 1.31767 * 121.90887 * 0.53247 * 27 26 10 29 29 C 1.46845 * 111.20380 * 298.26345 * 7 6 5 30 30 H 1.09004 * 109.46909 * 180.09642 * 1 2 3 31 31 H 1.09004 * 109.47300 * 300.09729 * 1 2 3 32 32 H 1.08999 * 109.47215 * 60.09394 * 1 2 3 33 33 H 1.08999 * 109.52753 * 297.50013 * 4 2 1 34 34 H 1.09006 * 109.52412 * 57.62766 * 4 2 1 35 35 H 1.08999 * 109.49920 * 62.28741 * 5 4 2 36 36 H 1.09001 * 109.50344 * 182.36395 * 5 4 2 37 37 H 1.09004 * 109.45750 * 299.16545 * 6 5 4 38 38 H 1.08998 * 109.46532 * 179.20043 * 6 5 4 39 39 H 1.08001 * 120.86213 * 359.95687 * 9 8 7 40 40 H 0.97000 * 120.00319 * 173.51371 * 11 10 9 41 41 H 0.97001 * 120.00438 * 185.03889 * 16 15 13 42 42 H 1.07992 * 119.04393 * 180.28914 * 27 26 10 43 43 H 1.08999 * 109.46597 * 181.75525 * 29 7 6 44 44 H 1.09000 * 109.45986 * 301.73426 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7238 1.2487 5 6 3.5712 -0.7719 1.2106 6 6 4.0230 -1.4729 -0.0725 7 7 3.5092 -0.7421 -1.2379 8 6 4.0074 -1.2740 -2.4171 9 6 5.3486 -1.1123 -2.7538 10 6 5.7994 -1.6655 -3.9476 11 7 7.1276 -1.5316 -4.3287 12 6 7.9826 -0.7322 -3.5893 13 6 7.7114 0.6223 -3.4393 14 1 8.1410 1.1708 -2.6141 15 6 6.8763 1.2799 -4.3635 16 7 6.5161 0.6761 -5.4609 17 14 6.2851 3.0175 -4.0163 18 1 6.8305 3.4748 -2.7130 19 1 6.7530 3.9244 -5.0950 20 1 4.8011 3.0344 -3.9645 21 6 9.1296 -1.2930 -2.9880 22 6 9.3805 -2.6987 -3.0971 23 7 9.5793 -3.8139 -3.1837 24 6 10.0395 -0.4575 -2.2638 25 7 10.7613 0.2052 -1.6890 26 7 4.9369 -2.3208 -4.7227 27 6 3.6760 -2.4566 -4.3667 28 7 3.2104 -1.9474 -3.2442 29 6 2.0409 -0.7233 -1.2481 30 1 -0.3633 -1.0277 0.0017 31 1 -0.3634 0.5154 0.8891 32 1 -0.3633 0.5124 -0.8908 33 1 1.7157 -0.1871 2.1398 34 1 1.6443 -1.7388 1.2695 35 1 3.9677 0.2432 1.2297 36 1 3.9396 -1.3228 2.0760 37 1 3.6374 -2.4924 -0.0844 38 1 5.1121 -1.4962 -0.1095 39 1 6.0213 -0.5712 -2.1049 40 1 7.4566 -1.9980 -5.1129 41 1 6.0021 1.1534 -6.1309 42 1 3.0034 -2.9977 -5.0157 43 1 1.6904 -0.2021 -2.1389 44 1 1.6647 -1.7463 -1.2543 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158214366.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:12 Heat of formation + Delta-G solvation = 96.264249 kcal Electronic energy + Delta-G solvation = -29163.939958 eV Core-core repulsion = 25308.524836 eV Total energy + Delta-G solvation = -3855.415122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.07873 -40.17264 -39.04447 -37.12337 -36.56531 -35.93829 -35.19303 -33.57816 -32.78658 -31.66110 -30.82119 -28.87059 -27.55747 -25.95339 -25.18320 -23.69577 -22.79944 -22.49535 -20.83114 -20.50330 -19.14196 -19.10346 -18.29301 -17.80926 -16.76875 -16.51468 -16.16226 -16.01572 -15.66462 -15.40961 -15.37857 -15.12141 -14.80127 -14.70182 -14.57375 -14.39107 -13.97967 -13.92335 -13.50497 -13.44416 -13.42600 -13.31559 -13.19936 -12.85790 -12.81374 -12.74549 -12.66567 -12.31465 -11.98239 -11.94652 -11.76187 -11.60638 -11.53111 -11.36198 -11.21659 -10.96713 -10.17271 -10.04286 -9.49306 -9.33594 -8.67934 -7.19508 0.22837 0.28216 0.80420 1.32495 1.47326 1.49934 1.98081 2.03737 2.13211 2.21432 2.48592 2.53630 2.64761 3.09505 3.36768 3.46173 3.72395 3.76960 3.86549 3.93764 3.97868 4.16018 4.20692 4.36409 4.51613 4.54004 4.59912 4.63129 4.63648 4.71696 4.81727 4.83749 4.90224 4.95129 4.98546 5.11941 5.20273 5.24723 5.30632 5.36032 5.40767 5.53383 5.61133 5.74777 5.95628 6.03065 6.20805 6.29039 6.61329 6.83111 7.14888 7.31248 7.48430 7.64346 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.009990 B = 0.004302 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2802.128911 B = 6507.051073 C = 6826.995015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.113 4.113 6 C 0.062 3.938 7 N -0.482 5.482 8 C 0.362 3.638 9 C -0.287 4.287 10 C 0.472 3.528 11 N -0.629 5.629 12 C 0.373 3.627 13 C -0.364 4.364 14 H 0.113 0.887 15 C 0.048 3.952 16 N -0.720 5.720 17 Si 0.972 3.028 18 H -0.247 1.247 19 H -0.253 1.253 20 H -0.265 1.265 21 C -0.316 4.316 22 C 0.315 3.685 23 N -0.555 5.555 24 C 0.331 3.669 25 N -0.550 5.550 26 N -0.601 5.601 27 C 0.342 3.658 28 N -0.606 5.606 29 C 0.079 3.921 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.141 0.859 40 H 0.407 0.593 41 H 0.311 0.689 42 H 0.221 0.779 43 H 0.063 0.937 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.131 3.752 5.126 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 H 0.090 0.910 4 C -0.149 4.149 5 C -0.151 4.151 6 C -0.064 4.064 7 N -0.201 5.201 8 C 0.127 3.873 9 C -0.318 4.318 10 C 0.230 3.770 11 N -0.252 5.252 12 C 0.269 3.731 13 C -0.391 4.391 14 H 0.131 0.869 15 C -0.183 4.183 16 N -0.337 5.337 17 Si 0.791 3.209 18 H -0.170 1.170 19 H -0.177 1.177 20 H -0.189 1.189 21 C -0.335 4.335 22 C 0.009 3.991 23 N -0.238 5.238 24 C 0.024 3.976 25 N -0.233 5.233 26 N -0.327 5.327 27 C 0.051 3.949 28 N -0.331 5.331 29 C -0.047 4.047 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.092 0.908 39 H 0.159 0.841 40 H 0.244 0.756 41 H 0.124 0.876 42 H 0.237 0.763 43 H 0.082 0.918 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.232 3.124 5.289 17.355 hybrid contribution 0.278 0.230 -0.597 0.698 sum -15.954 3.354 4.691 16.964 Atomic orbital electron populations 1.21726 0.93307 1.02230 1.02406 1.21243 0.96497 0.99718 0.93495 0.90966 1.21658 0.94565 1.00872 0.97851 1.21623 0.96708 1.01592 0.95131 1.22261 1.00209 0.94935 0.88951 1.59207 1.11368 1.49608 0.99935 1.19861 0.89141 0.86895 0.91428 1.21683 0.97400 1.11892 1.00790 1.18085 0.84785 0.86559 0.87523 1.41163 1.05221 1.48624 1.30171 1.16669 0.84632 0.88440 0.83376 1.20535 1.17823 0.92856 1.07845 0.86935 1.27024 0.92513 1.05191 0.93595 1.69490 1.19699 1.39802 1.04741 0.85188 0.79029 0.75451 0.81229 1.16963 1.17739 1.18930 1.12870 1.05019 0.82785 1.32858 1.25318 0.91287 0.91894 0.90604 1.81071 1.12155 1.13124 1.17474 1.24728 0.90888 0.91657 0.90341 1.81062 1.13559 1.10655 1.18006 1.67900 1.05031 1.24765 1.34989 1.24946 0.88787 0.91002 0.90183 1.68408 1.39876 1.16341 1.08454 1.21999 0.83750 1.00062 0.98933 0.92431 0.91029 0.92735 0.89782 0.91826 0.90970 0.89268 0.94263 0.90843 0.84087 0.75606 0.87629 0.76322 0.91835 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.20 71.98 0.66 -1.34 16 2 C -0.09 -1.67 2.88 -10.74 -0.03 -1.70 16 3 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.11 -1.78 5.29 30.67 0.16 -1.62 16 5 C -0.11 -2.10 6.09 30.65 0.19 -1.91 16 6 C 0.06 1.55 5.35 86.33 0.46 2.01 16 7 N -0.48 -13.81 4.64 -701.65 -3.26 -17.07 16 8 C 0.36 12.18 6.07 132.99 0.81 12.98 16 9 C -0.29 -10.62 7.99 22.71 0.18 -10.44 16 10 C 0.47 18.06 6.28 132.87 0.83 18.89 16 11 N -0.63 -24.63 3.31 -184.44 -0.61 -25.24 16 12 C 0.37 15.06 4.99 38.98 0.19 15.26 16 13 C -0.36 -14.18 6.86 23.08 0.16 -14.03 16 14 H 0.11 4.43 7.10 -2.91 -0.02 4.41 16 15 C 0.05 1.75 4.81 85.56 0.41 2.16 16 16 N -0.72 -26.75 11.11 21.98 0.24 -26.50 16 17 Si 0.97 29.36 29.58 68.60 2.03 31.39 16 18 H -0.25 -7.52 7.11 99.48 0.71 -6.81 16 19 H -0.25 -7.31 7.11 99.48 0.71 -6.60 16 20 H -0.26 -8.19 7.11 99.48 0.71 -7.48 16 21 C -0.32 -13.52 5.89 -20.08 -0.12 -13.64 16 22 C 0.32 14.17 14.82 88.33 1.31 15.47 16 23 N -0.56 -26.14 18.54 19.01 0.35 -25.79 16 24 C 0.33 14.70 13.94 88.33 1.23 15.93 16 25 N -0.55 -25.34 18.54 19.00 0.35 -24.99 16 26 N -0.60 -21.81 10.47 -197.73 -2.07 -23.88 16 27 C 0.34 10.69 12.28 180.91 2.22 12.91 16 28 N -0.61 -19.60 9.00 -197.81 -1.78 -21.38 16 29 C 0.08 1.94 3.94 86.33 0.34 2.28 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 2.02 7.62 -2.39 -0.02 2.00 16 39 H 0.14 5.41 6.29 -2.91 -0.02 5.39 16 40 H 0.41 16.01 8.94 -92.71 -0.83 15.18 16 41 H 0.31 10.58 8.29 -92.71 -0.77 9.81 16 42 H 0.22 5.00 8.06 -2.91 -0.02 4.98 16 43 H 0.06 1.72 8.00 -2.39 -0.02 1.70 16 44 H 0.05 1.16 7.96 -2.39 -0.02 1.14 16 Total: -1.00 -51.49 378.71 4.50 -46.98 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.23 Total: 33.25 kcal Atomic # 6 Polarization: 44.22 SS G_CDS: 9.01 Total: 53.23 kcal Atomic # 7 Polarization: -158.08 SS G_CDS: -6.77 Total: -164.85 kcal Atomic # 14 Polarization: 29.36 SS G_CDS: 2.03 Total: 31.39 kcal Total: -51.49 4.50 -46.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214366.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.249 kcal (2) G-P(sol) polarization free energy of solvation -51.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds