Wall clock time and date at job start Tue Mar 31 2020 21:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.50003 * 2 1 4 4 C 1.53049 * 109.52210 * 239.91591 * 2 1 3 5 5 C 1.53041 * 109.53808 * 301.40036 * 4 2 1 6 6 C 1.53189 * 109.31345 * 298.63812 * 5 4 2 7 7 N 1.46929 * 108.78143 * 54.63153 * 6 5 4 8 8 C 1.34774 * 120.63061 * 126.36770 * 7 6 5 9 9 O 1.21609 * 119.99884 * 188.31554 * 8 7 6 10 10 C 1.47446 * 119.99802 * 8.32287 * 8 7 6 11 11 C 1.37985 * 124.15038 * 187.36830 * 10 8 7 12 12 S 1.72109 * 104.03312 * 180.02562 * 11 10 8 13 13 N 1.56406 * 96.15194 * 359.97438 * 12 11 10 14 14 N 1.27424 * 109.87754 * 359.72862 * 13 12 11 15 15 C 1.46929 * 118.73764 * 306.39674 * 7 6 5 16 16 H 1.08999 * 109.70443 * 293.74716 * 15 7 6 17 17 C 1.52996 * 109.58508 * 173.39005 * 15 7 6 18 18 C 1.52995 * 109.47098 * 177.48250 * 17 15 7 19 19 C 1.53001 * 109.47406 * 176.43357 * 18 17 15 20 20 N 1.46495 * 109.47297 * 180.02562 * 19 18 17 21 21 C 1.36933 * 120.00422 * 179.97438 * 20 19 18 22 22 H 1.08010 * 119.99897 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00821 * 180.02562 * 21 20 19 24 24 N 1.31618 * 120.00569 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99659 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47141 * 90.00183 * 25 23 21 27 27 H 1.48498 * 109.47052 * 210.00473 * 25 23 21 28 28 H 1.48505 * 109.47180 * 330.00208 * 25 23 21 29 29 H 1.09002 * 109.47234 * 299.94119 * 1 2 3 30 30 H 1.09003 * 109.46945 * 59.93513 * 1 2 3 31 31 H 1.08998 * 109.47461 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.45830 * 61.41781 * 4 2 1 33 33 H 1.08992 * 109.45675 * 181.39298 * 4 2 1 34 34 H 1.09004 * 109.49466 * 58.58590 * 5 4 2 35 35 H 1.08990 * 109.49698 * 178.65041 * 5 4 2 36 36 H 1.09000 * 109.58948 * 174.42240 * 6 5 4 37 37 H 1.09007 * 109.58172 * 294.84786 * 6 5 4 38 38 H 1.07997 * 127.98698 * 359.95786 * 11 10 8 39 39 H 1.09000 * 109.47055 * 57.48519 * 17 15 7 40 40 H 1.09001 * 109.47528 * 297.48337 * 17 15 7 41 41 H 1.09002 * 109.47386 * 56.43587 * 18 17 15 42 42 H 1.09004 * 109.47404 * 296.43663 * 18 17 15 43 43 H 1.08999 * 109.46980 * 60.00481 * 19 18 17 44 44 H 1.08995 * 109.47088 * 300.00271 * 19 18 17 45 45 H 0.97005 * 120.00470 * 0.02562 * 20 19 18 46 46 H 0.96997 * 120.00470 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0414 -0.7231 -1.2482 5 6 1.5042 -2.1560 -1.2658 6 6 2.0151 -2.9038 -0.0303 7 7 1.6521 -2.1380 1.1699 8 6 0.9745 -2.7218 2.1781 9 8 0.5482 -2.0467 3.0953 10 6 0.7503 -4.1791 2.1690 11 6 -0.0510 -4.8452 3.0735 12 16 0.0581 -6.4941 2.5926 13 7 1.0237 -6.2532 1.3860 14 7 1.2900 -5.0112 1.2855 15 6 2.0413 -0.7235 1.2498 16 1 3.1272 -0.6433 1.2999 17 6 1.4222 -0.0910 2.4978 18 6 1.8798 1.3645 2.6124 19 6 1.1914 2.0229 3.8096 20 7 1.6290 3.4166 3.9189 21 6 1.1420 4.2106 4.9227 22 1 0.4354 3.8091 5.6341 23 6 1.5562 5.5314 5.0260 24 7 1.0885 6.2944 5.9911 25 14 2.7788 6.2257 3.7960 26 1 2.0453 6.8061 2.6427 27 1 3.5913 7.2834 4.4489 28 1 3.6719 5.1394 3.3186 29 1 -0.3634 0.5129 0.8905 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6994 -0.1961 -2.1389 33 1 3.1311 -0.7441 -1.2347 34 1 0.4144 -2.1361 -1.2542 35 1 1.8492 -2.6628 -2.1669 36 1 1.5569 -3.8919 0.0142 37 1 3.0992 -3.0036 -0.0860 38 1 -0.6154 -4.4283 3.8945 39 1 1.7421 -0.6430 3.3816 40 1 0.3354 -0.1252 2.4216 41 1 1.6157 1.9012 1.7011 42 1 2.9604 1.3958 2.7522 43 1 1.4555 1.4863 4.7209 44 1 0.1109 1.9916 3.6698 45 1 2.2633 3.7774 3.2798 46 1 1.3782 7.2172 6.0635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264019157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:27 Heat of formation + Delta-G solvation = 72.385099 kcal Electronic energy + Delta-G solvation = -27797.137057 eV Core-core repulsion = 24043.837658 eV Total energy + Delta-G solvation = -3753.299399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.78110 -40.46024 -37.99186 -35.79095 -34.12316 -33.35357 -32.41001 -31.51827 -29.90944 -28.08034 -27.07187 -26.37669 -24.81598 -23.62053 -22.82973 -21.36403 -21.22331 -20.56480 -19.62168 -18.25072 -17.42819 -16.85920 -16.58551 -16.37144 -15.80906 -15.66866 -15.05225 -14.61283 -14.48730 -14.21000 -14.07159 -13.89742 -13.57751 -13.46554 -12.94847 -12.76939 -12.66419 -12.51010 -12.29253 -11.96757 -11.83585 -11.67776 -11.36738 -11.17463 -11.07467 -10.83663 -10.81573 -10.76394 -10.51558 -10.46332 -10.25104 -10.11570 -10.03314 -9.97105 -9.50632 -9.32880 -8.79832 -8.69306 -7.12431 -5.68771 -3.02976 -0.37953 0.47619 1.02530 1.07320 2.65899 2.82554 3.39098 3.42877 3.45709 3.50004 4.19637 4.31027 4.57817 4.64045 4.66430 4.66976 4.80733 4.87624 5.01933 5.15154 5.29757 5.37079 5.49778 5.51636 5.56586 5.59694 5.64708 5.70271 5.76769 5.81760 5.90158 5.99033 6.00144 6.12031 6.14371 6.26932 6.32258 6.40021 6.45129 6.76236 6.94806 6.97413 7.00955 7.17615 7.85779 8.09668 8.50939 9.31033 10.03677 10.24698 11.50093 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017083 B = 0.002647 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.659254 B =10573.842204 C =11826.281445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.117 4.117 5 C -0.136 4.136 6 C 0.082 3.918 7 N -0.585 5.585 8 C 0.596 3.404 9 O -0.505 6.505 10 C -0.020 4.020 11 C -0.235 4.235 12 S 0.464 5.536 13 N -0.298 5.298 14 N -0.211 5.211 15 C 0.152 3.848 16 H 0.076 0.924 17 C -0.108 4.108 18 C -0.136 4.136 19 C 0.161 3.839 20 N -0.759 5.759 21 C -0.239 4.239 22 H 0.089 0.911 23 C 0.000 4.000 24 N -0.937 5.937 25 Si 0.886 3.114 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.277 1.277 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.128 0.872 37 H 0.068 0.932 38 H 0.210 0.790 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.025 0.975 44 H 0.025 0.975 45 H 0.359 0.641 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.004 -29.687 -14.972 33.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 H 0.106 0.894 4 C -0.154 4.154 5 C -0.174 4.174 6 C -0.041 4.041 7 N -0.317 5.317 8 C 0.379 3.621 9 O -0.379 6.379 10 C -0.167 4.167 11 C -0.392 4.392 12 S 0.600 5.400 13 N -0.277 5.277 14 N -0.081 5.081 15 C 0.050 3.950 16 H 0.094 0.906 17 C -0.146 4.146 18 C -0.175 4.175 19 C 0.034 3.966 20 N -0.404 5.404 21 C -0.369 4.369 22 H 0.107 0.893 23 C -0.195 4.195 24 N -0.586 5.586 25 Si 0.716 3.284 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.145 0.855 37 H 0.087 0.913 38 H 0.227 0.773 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.192 0.808 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.951 -30.922 -15.141 34.443 hybrid contribution 0.839 2.152 -0.394 2.343 sum -0.112 -28.770 -15.535 32.697 Atomic orbital electron populations 1.21895 0.94682 1.01676 1.02206 1.21576 0.96966 0.99944 0.93958 0.89364 1.21587 1.00503 0.95455 0.97878 1.21969 1.01568 0.96198 0.97681 1.22614 1.01170 0.97311 0.83045 1.47911 1.54575 1.11574 1.17638 1.16836 0.79158 0.83175 0.82941 1.90972 1.49325 1.61088 1.36524 1.22971 1.00643 0.98097 0.94946 1.28939 1.04162 1.00260 1.05827 1.81575 1.33516 1.06400 1.18518 1.78669 1.17209 1.13080 1.18787 1.71529 1.20382 0.95013 1.21151 1.21500 0.98805 0.78137 0.96536 0.90619 1.22162 1.02057 0.94334 0.96067 1.21955 1.00410 0.95526 0.99583 1.20548 0.96355 0.84897 0.94777 1.42758 1.53879 1.08552 1.35207 1.19108 1.20761 0.92069 1.04956 0.89279 1.24680 1.00153 0.96375 0.98310 1.69706 1.47797 1.07407 1.33700 0.86517 0.81803 0.78617 0.81454 1.21157 1.21820 1.20345 0.91497 0.92921 0.92886 0.91655 0.91803 0.91339 0.90857 0.85498 0.91344 0.77278 0.89676 0.89904 0.92148 0.92487 0.95692 0.95683 0.80837 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.20 37.16 0.30 -1.31 16 2 C -0.11 -1.10 2.37 -90.49 -0.21 -1.31 16 3 H 0.09 0.96 6.74 -51.93 -0.35 0.61 16 4 C -0.12 -0.98 5.43 -26.68 -0.14 -1.13 16 5 C -0.14 -1.08 5.74 -26.61 -0.15 -1.23 16 6 C 0.08 0.73 6.01 -3.71 -0.02 0.71 16 7 N -0.59 -6.39 2.41 -166.47 -0.40 -6.79 16 8 C 0.60 7.20 7.57 -12.51 -0.09 7.10 16 9 O -0.50 -7.35 12.24 5.27 0.06 -7.28 16 10 C -0.02 -0.20 6.62 -83.78 -0.55 -0.75 16 11 C -0.23 -1.68 11.22 30.64 0.34 -1.33 16 12 S 0.46 2.41 23.38 -107.50 -2.51 -0.11 16 13 N -0.30 -2.56 12.49 60.35 0.75 -1.81 16 14 N -0.21 -2.05 7.95 32.74 0.26 -1.79 16 15 C 0.15 1.77 2.69 -67.60 -0.18 1.59 16 16 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 17 C -0.11 -1.55 2.72 -26.74 -0.07 -1.62 16 18 C -0.14 -2.21 5.14 -26.73 -0.14 -2.35 16 19 C 0.16 3.39 6.26 -4.04 -0.03 3.36 16 20 N -0.76 -19.22 5.41 -59.91 -0.32 -19.55 16 21 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 22 H 0.09 2.84 8.06 -52.48 -0.42 2.42 16 23 C 0.00 0.00 5.50 -17.43 -0.10 -0.10 16 24 N -0.94 -30.44 13.97 55.49 0.78 -29.66 16 25 Si 0.89 22.87 27.73 -169.99 -4.71 18.15 16 26 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 28 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 29 H 0.07 0.85 6.28 -51.93 -0.33 0.52 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.58 5.97 -51.93 -0.31 0.27 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.58 6.34 -51.93 -0.33 0.26 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.13 1.18 4.14 -89.84 -0.37 0.80 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.21 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.08 1.35 6.34 -51.93 -0.33 1.02 16 40 H 0.08 1.27 5.14 -51.93 -0.27 1.01 16 41 H 0.06 0.94 6.48 -51.93 -0.34 0.60 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.36 8.78 5.53 -40.82 -0.23 8.56 16 46 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -34.86 362.94 -8.50 -43.36 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.66 Total: 5.67 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -1.21 Total: -5.66 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 1.06 Total: -59.60 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.06 Total: -7.28 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.71 Total: 18.15 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -2.51 Total: -0.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.86 -8.50 -43.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264019157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.747 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds