Wall clock time and date at job start Tue Mar 31 2020 21:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.50003 * 2 1 4 4 C 1.53049 * 109.52210 * 239.91591 * 2 1 3 5 5 C 1.53041 * 109.53808 * 301.40036 * 4 2 1 6 6 C 1.53189 * 109.31345 * 298.63812 * 5 4 2 7 7 N 1.46929 * 108.78143 * 54.63153 * 6 5 4 8 8 C 1.34774 * 120.63061 * 126.36770 * 7 6 5 9 9 O 1.21609 * 119.99884 * 188.31554 * 8 7 6 10 10 C 1.47446 * 119.99802 * 8.32287 * 8 7 6 11 11 C 1.37985 * 124.15038 * 187.36830 * 10 8 7 12 12 S 1.72109 * 104.03312 * 180.02562 * 11 10 8 13 13 N 1.56406 * 96.15194 * 359.97438 * 12 11 10 14 14 N 1.27424 * 109.87754 * 359.72862 * 13 12 11 15 15 C 1.46929 * 118.73764 * 306.39674 * 7 6 5 16 16 H 1.08999 * 109.70443 * 293.74716 * 15 7 6 17 17 C 1.52996 * 109.58508 * 173.39005 * 15 7 6 18 18 C 1.52995 * 109.47098 * 177.48250 * 17 15 7 19 19 C 1.53001 * 109.47406 * 176.43357 * 18 17 15 20 20 N 1.46495 * 109.47297 * 180.02562 * 19 18 17 21 21 C 1.36933 * 120.00422 * 179.97438 * 20 19 18 22 22 H 1.08010 * 119.99897 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00821 * 180.02562 * 21 20 19 24 24 N 1.31618 * 120.00569 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99659 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47141 * 90.00183 * 25 23 21 27 27 H 1.48498 * 109.47052 * 210.00473 * 25 23 21 28 28 H 1.48505 * 109.47180 * 330.00208 * 25 23 21 29 29 H 1.09002 * 109.47234 * 299.94119 * 1 2 3 30 30 H 1.09003 * 109.46945 * 59.93513 * 1 2 3 31 31 H 1.08998 * 109.47461 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.45830 * 61.41781 * 4 2 1 33 33 H 1.08992 * 109.45675 * 181.39298 * 4 2 1 34 34 H 1.09004 * 109.49466 * 58.58590 * 5 4 2 35 35 H 1.08990 * 109.49698 * 178.65041 * 5 4 2 36 36 H 1.09000 * 109.58948 * 174.42240 * 6 5 4 37 37 H 1.09007 * 109.58172 * 294.84786 * 6 5 4 38 38 H 1.07997 * 127.98698 * 359.95786 * 11 10 8 39 39 H 1.09000 * 109.47055 * 57.48519 * 17 15 7 40 40 H 1.09001 * 109.47528 * 297.48337 * 17 15 7 41 41 H 1.09002 * 109.47386 * 56.43587 * 18 17 15 42 42 H 1.09004 * 109.47404 * 296.43663 * 18 17 15 43 43 H 1.08999 * 109.46980 * 60.00481 * 19 18 17 44 44 H 1.08995 * 109.47088 * 300.00271 * 19 18 17 45 45 H 0.97005 * 120.00470 * 0.02562 * 20 19 18 46 46 H 0.96997 * 120.00470 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0414 -0.7231 -1.2482 5 6 1.5042 -2.1560 -1.2658 6 6 2.0151 -2.9038 -0.0303 7 7 1.6521 -2.1380 1.1699 8 6 0.9745 -2.7218 2.1781 9 8 0.5482 -2.0467 3.0953 10 6 0.7503 -4.1791 2.1690 11 6 -0.0510 -4.8452 3.0735 12 16 0.0581 -6.4941 2.5926 13 7 1.0237 -6.2532 1.3860 14 7 1.2900 -5.0112 1.2855 15 6 2.0413 -0.7235 1.2498 16 1 3.1272 -0.6433 1.2999 17 6 1.4222 -0.0910 2.4978 18 6 1.8798 1.3645 2.6124 19 6 1.1914 2.0229 3.8096 20 7 1.6290 3.4166 3.9189 21 6 1.1420 4.2106 4.9227 22 1 0.4354 3.8091 5.6341 23 6 1.5562 5.5314 5.0260 24 7 1.0885 6.2944 5.9911 25 14 2.7788 6.2257 3.7960 26 1 2.0453 6.8061 2.6427 27 1 3.5913 7.2834 4.4489 28 1 3.6719 5.1394 3.3186 29 1 -0.3634 0.5129 0.8905 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6994 -0.1961 -2.1389 33 1 3.1311 -0.7441 -1.2347 34 1 0.4144 -2.1361 -1.2542 35 1 1.8492 -2.6628 -2.1669 36 1 1.5569 -3.8919 0.0142 37 1 3.0992 -3.0036 -0.0860 38 1 -0.6154 -4.4283 3.8945 39 1 1.7421 -0.6430 3.3816 40 1 0.3354 -0.1252 2.4216 41 1 1.6157 1.9012 1.7011 42 1 2.9604 1.3958 2.7522 43 1 1.4555 1.4863 4.7209 44 1 0.1109 1.9916 3.6698 45 1 2.2633 3.7774 3.2798 46 1 1.3782 7.2172 6.0635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264019157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:26 Heat of formation + Delta-G solvation = 49.314293 kcal Electronic energy + Delta-G solvation = -27798.137482 eV Core-core repulsion = 24043.837658 eV Total energy + Delta-G solvation = -3754.299824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.50946 -41.24315 -38.87343 -37.42942 -35.43411 -34.43618 -33.46306 -32.98713 -31.32768 -28.94338 -28.02477 -27.29242 -26.08615 -24.56533 -24.16093 -22.88602 -22.08625 -21.65175 -20.35246 -19.62124 -19.02977 -17.57212 -17.38815 -17.13409 -16.74217 -16.56294 -16.47909 -15.93661 -15.73122 -15.38821 -15.16180 -15.03810 -14.78703 -14.57376 -14.29208 -13.88964 -13.74373 -13.55085 -13.28348 -13.07521 -12.99491 -12.80099 -12.78033 -12.47324 -12.25089 -12.10160 -11.99098 -11.90946 -11.75765 -11.65449 -11.40156 -11.25429 -11.09698 -10.99417 -10.93635 -10.65293 -10.33348 -9.55926 -9.32438 -8.04453 -5.38894 -0.93991 -0.05038 0.30099 0.52727 1.36756 1.41815 1.49407 1.85826 1.99715 2.47907 2.70600 3.26143 3.40318 3.64851 3.68319 3.79099 3.86233 3.92794 4.11163 4.16913 4.22309 4.29890 4.34788 4.50905 4.59670 4.62331 4.66645 4.70741 4.79712 4.89744 4.97237 5.01786 5.06678 5.08121 5.16399 5.24907 5.26707 5.30872 5.44485 5.46962 5.53284 5.72875 5.75176 6.19504 6.24427 6.45002 6.99282 7.05825 7.81149 8.03661 9.17385 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017083 B = 0.002647 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.659254 B =10573.842204 C =11826.281445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.087 0.913 4 C -0.112 4.112 5 C -0.131 4.131 6 C 0.081 3.919 7 N -0.584 5.584 8 C 0.590 3.410 9 O -0.542 6.542 10 C -0.043 4.043 11 C -0.244 4.244 12 S 0.564 5.436 13 N -0.332 5.332 14 N -0.224 5.224 15 C 0.154 3.846 16 H 0.085 0.915 17 C -0.094 4.094 18 C -0.121 4.121 19 C 0.159 3.841 20 N -0.758 5.758 21 C -0.242 4.242 22 H 0.050 0.950 23 C -0.067 4.067 24 N -0.985 5.985 25 Si 0.963 3.037 26 H -0.274 1.274 27 H -0.293 1.293 28 H -0.249 1.249 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.076 0.924 38 H 0.221 0.779 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.012 0.988 44 H 0.015 0.985 45 H 0.368 0.632 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 -31.418 -17.676 36.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.106 0.894 4 C -0.149 4.149 5 C -0.169 4.169 6 C -0.042 4.042 7 N -0.314 5.314 8 C 0.374 3.626 9 O -0.420 6.420 10 C -0.190 4.190 11 C -0.400 4.400 12 S 0.700 5.300 13 N -0.312 5.312 14 N -0.093 5.093 15 C 0.052 3.948 16 H 0.103 0.897 17 C -0.132 4.132 18 C -0.160 4.160 19 C 0.033 3.967 20 N -0.404 5.404 21 C -0.373 4.373 22 H 0.068 0.932 23 C -0.258 4.258 24 N -0.636 5.636 25 Si 0.789 3.211 26 H -0.200 1.200 27 H -0.219 1.219 28 H -0.174 1.174 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.238 0.762 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.030 0.970 44 H 0.033 0.967 45 H 0.201 0.799 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.402 -32.711 -17.895 37.288 hybrid contribution 0.267 2.508 0.587 2.589 sum 0.670 -30.203 -17.308 34.818 Atomic orbital electron populations 1.21841 0.95353 1.01303 1.01531 1.21572 0.96316 1.00018 0.94368 0.89445 1.21564 1.01034 0.95396 0.96924 1.21950 1.01077 0.96017 0.97874 1.22754 1.01653 0.97260 0.82518 1.47990 1.54039 1.11323 1.18087 1.17153 0.78685 0.84157 0.82573 1.90947 1.51017 1.62223 1.37779 1.22743 1.02488 0.97241 0.96553 1.29254 1.03345 1.01911 1.05517 1.81220 1.30164 1.03364 1.15264 1.78365 1.18999 1.12777 1.21088 1.71559 1.20979 0.95262 1.21494 1.21413 0.99004 0.78764 0.95658 0.89744 1.21929 1.01260 0.92943 0.97028 1.21818 1.00231 0.96350 0.97553 1.20670 0.96296 0.83135 0.96575 1.42725 1.53880 1.09628 1.34195 1.19058 1.20041 0.92902 1.05255 0.93223 1.25616 1.02758 0.96634 1.00814 1.69901 1.49702 1.07844 1.36114 0.85297 0.79116 0.78180 0.78538 1.20000 1.21929 1.17389 0.93807 0.91849 0.93159 0.90600 0.90844 0.92084 0.88825 0.85510 0.90586 0.76171 0.91545 0.91346 0.90871 0.91620 0.96984 0.96669 0.79890 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.20 71.98 0.59 -2.45 16 2 C -0.10 -1.98 2.37 -10.71 -0.03 -2.01 16 3 H 0.09 1.70 6.74 -2.39 -0.02 1.69 16 4 C -0.11 -1.57 5.43 30.62 0.17 -1.41 16 5 C -0.13 -1.77 5.74 30.67 0.18 -1.60 16 6 C 0.08 1.32 6.01 86.36 0.52 1.84 16 7 N -0.58 -12.42 2.41 -798.83 -1.93 -14.35 16 8 C 0.59 14.44 7.57 86.67 0.66 15.10 16 9 O -0.54 -16.50 12.24 -4.06 -0.05 -16.55 16 10 C -0.04 -0.84 6.62 41.36 0.27 -0.57 16 11 C -0.24 -3.22 11.22 67.76 0.76 -2.46 16 12 S 0.56 4.59 23.38 -56.49 -1.32 3.27 16 13 N -0.33 -5.18 12.49 37.02 0.46 -4.72 16 14 N -0.22 -4.14 7.95 -50.34 -0.40 -4.54 16 15 C 0.15 3.43 2.69 44.97 0.12 3.55 16 16 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 17 C -0.09 -2.71 2.72 30.59 0.08 -2.63 16 18 C -0.12 -3.86 5.14 30.59 0.16 -3.70 16 19 C 0.16 6.84 6.26 86.38 0.54 7.38 16 20 N -0.76 -38.39 5.41 -343.46 -1.86 -40.25 16 21 C -0.24 -14.79 10.47 84.03 0.88 -13.91 16 22 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 23 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 24 N -0.99 -65.50 13.97 21.65 0.30 -65.20 16 25 Si 0.96 46.82 27.73 68.60 1.90 48.72 16 26 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 27 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 28 H -0.25 -10.90 6.52 99.48 0.65 -10.25 16 29 H 0.04 1.12 6.28 -2.39 -0.01 1.11 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.08 5.97 -2.39 -0.01 1.07 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.93 6.34 -2.39 -0.02 0.92 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.13 2.20 4.14 -51.39 -0.21 1.99 16 37 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.22 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.07 2.19 6.34 -2.39 -0.02 2.17 16 40 H 0.07 2.19 5.14 -2.39 -0.01 2.18 16 41 H 0.07 2.16 6.48 -2.39 -0.02 2.15 16 42 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.37 17.28 5.53 -92.70 -0.51 16.77 16 46 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -77.76 362.94 2.72 -75.05 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.24 Total: 25.09 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 5.37 Total: -6.52 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -3.42 Total: -129.06 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.05 Total: -16.55 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.90 Total: 48.72 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.32 Total: 3.27 kcal Total: -77.76 2.72 -75.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264019157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.360 kcal (2) G-P(sol) polarization free energy of solvation -77.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds