Wall clock time and date at job start Tue Mar 31 2020 21:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.49885 * 2 1 4 4 C 1.53038 * 109.49666 * 239.92891 * 2 1 3 5 5 C 1.53042 * 109.53545 * 178.68607 * 4 2 1 6 6 C 1.53192 * 109.31551 * 61.37012 * 5 4 2 7 7 N 1.46934 * 108.77038 * 305.36498 * 6 5 4 8 8 C 1.34778 * 120.62590 * 233.58098 * 7 6 5 9 9 O 1.21554 * 119.99708 * 183.48537 * 8 7 6 10 10 C 1.47853 * 120.00300 * 3.48866 * 8 7 6 11 11 C 1.39545 * 120.12603 * 131.89622 * 10 8 7 12 12 C 1.38193 * 119.88361 * 180.02562 * 11 10 8 13 13 F 1.35096 * 119.94323 * 180.02562 * 12 11 10 14 14 C 1.38533 * 120.11984 * 359.97438 * 12 11 10 15 15 C 1.38529 * 120.24404 * 0.29702 * 14 12 11 16 16 F 1.35101 * 119.94082 * 179.70290 * 15 14 12 17 17 C 1.38206 * 120.12032 * 359.44622 * 15 14 12 18 18 C 1.46924 * 118.73976 * 53.85898 * 7 6 5 19 19 H 1.08998 * 109.58690 * 65.92738 * 18 7 6 20 20 C 1.53002 * 109.58314 * 186.35097 * 18 7 6 21 21 N 1.46496 * 109.47070 * 284.81584 * 20 18 7 22 22 C 1.36946 * 119.99975 * 185.33720 * 21 20 18 23 23 H 1.07999 * 119.99628 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99830 * 180.02562 * 22 21 20 25 25 N 1.31613 * 120.00126 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99488 * 179.97438 * 24 22 21 27 27 H 1.48490 * 109.47146 * 60.00075 * 26 24 22 28 28 H 1.48506 * 109.46663 * 180.02562 * 26 24 22 29 29 H 1.48495 * 109.47231 * 299.99800 * 26 24 22 30 30 H 1.08993 * 109.47287 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47131 * 300.06939 * 1 2 3 32 32 H 1.09003 * 109.46704 * 60.06792 * 1 2 3 33 33 H 1.08998 * 109.45673 * 58.67114 * 4 2 1 34 34 H 1.09003 * 109.46555 * 298.70456 * 4 2 1 35 35 H 1.09000 * 109.49869 * 301.41390 * 5 4 2 36 36 H 1.09004 * 109.49494 * 181.31736 * 5 4 2 37 37 H 1.08994 * 109.59362 * 185.57854 * 6 5 4 38 38 H 1.09000 * 109.58709 * 65.14496 * 6 5 4 39 39 H 1.08006 * 120.05783 * 0.04047 * 11 10 8 40 40 H 1.08004 * 119.88203 * 180.02562 * 14 12 11 41 41 H 1.07994 * 120.06510 * 180.25555 * 17 15 14 42 42 H 1.08997 * 109.47127 * 44.82170 * 20 18 7 43 43 H 1.09001 * 109.46813 * 164.82200 * 20 18 7 44 44 H 0.97002 * 120.00599 * 5.33839 * 21 20 18 45 45 H 0.97003 * 119.99699 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7229 -1.2485 5 6 3.5709 -0.6948 -1.2660 6 6 4.1053 -1.4268 -0.0310 7 7 3.5045 -0.8295 1.1695 8 6 4.2811 -0.3871 2.1784 9 8 3.7708 0.0469 3.1927 10 6 5.7535 -0.4296 2.0513 11 6 6.5168 0.6939 2.3715 12 6 7.8927 0.6488 2.2504 13 9 8.6329 1.7356 2.5605 14 6 8.5145 -0.5091 1.8125 15 6 7.7613 -1.6255 1.4879 16 9 8.3736 -2.7496 1.0558 17 6 6.3851 -1.5933 1.6104 18 6 2.0410 -0.7292 1.2519 19 1 1.6083 -1.7286 1.2981 20 6 1.6507 0.0603 2.5030 21 7 1.8294 -0.7826 3.6878 22 6 1.4386 -0.3259 4.9183 23 1 0.9990 0.6558 5.0152 24 6 1.6084 -1.1244 6.0410 25 7 2.1455 -2.3201 5.9230 26 14 1.0760 -0.5010 7.7195 27 1 -0.3806 -0.2127 7.7013 28 1 1.3637 -1.5352 8.7457 29 1 1.8223 0.7406 8.0460 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8893 32 1 -0.3633 0.5128 -0.8906 33 1 1.6582 -0.2240 -2.1389 34 1 1.6967 -1.7571 -1.2357 35 1 3.9160 0.3390 -1.2539 36 1 3.9334 -1.1894 -2.1672 37 1 5.1895 -1.3248 0.0137 38 1 3.8374 -2.4819 -0.0872 39 1 6.0331 1.5970 2.7136 40 1 9.5900 -0.5402 1.7197 41 1 5.7991 -2.4655 1.3610 42 1 2.2831 0.9440 2.5869 43 1 0.6071 0.3660 2.4287 44 1 2.2246 -1.6642 3.6008 45 1 2.2645 -2.8779 6.7076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268196585.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:29 Heat of formation + Delta-G solvation = -45.803241 kcal Electronic energy + Delta-G solvation = -30660.012171 eV Core-core repulsion = 26315.454603 eV Total energy + Delta-G solvation = -4344.557568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.16532 -49.13389 -40.64879 -38.64459 -37.12717 -34.68280 -33.57461 -32.15213 -31.25044 -30.51979 -30.16472 -27.12304 -26.10579 -24.61318 -23.45998 -23.01813 -22.37578 -21.06232 -20.40682 -19.49041 -17.87534 -17.31213 -16.90374 -16.66402 -16.21600 -16.07775 -15.88629 -15.46240 -15.42779 -14.90882 -14.72652 -14.53117 -14.43967 -14.01594 -13.74899 -13.43035 -13.05189 -12.96415 -12.76701 -12.47823 -12.41890 -12.10608 -12.07084 -11.99060 -11.90813 -11.66470 -11.44255 -11.00547 -10.88922 -10.68328 -10.64763 -10.60567 -10.19183 -9.83899 -9.51589 -9.24179 -8.89395 -8.75496 -8.52607 -8.14381 -6.55544 -5.55747 -2.75749 0.60300 0.79627 2.86176 3.11464 3.42908 3.55905 3.59400 3.60577 3.71115 4.26675 4.35668 4.60260 4.67731 4.71361 4.75060 4.85343 4.87298 4.91485 5.01456 5.26296 5.36342 5.43230 5.54676 5.58247 5.68174 5.70478 5.73111 5.75247 5.79301 5.80514 5.85643 5.88754 5.96860 6.01240 6.08217 6.14231 6.29402 6.41356 6.52556 6.56681 6.62920 6.89190 7.21859 7.75101 7.86521 8.62187 8.68617 9.73891 10.34015 10.68264 11.68109 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008314 B = 0.004870 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3367.125648 B = 5747.586791 C = 7894.806480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.134 4.134 6 C 0.096 3.904 7 N -0.606 5.606 8 C 0.516 3.484 9 O -0.426 6.426 10 C -0.046 4.046 11 C -0.119 4.119 12 C 0.128 3.872 13 F -0.130 7.130 14 C -0.184 4.184 15 C 0.125 3.875 16 F -0.130 7.130 17 C -0.141 4.141 18 C 0.148 3.852 19 H 0.073 0.927 20 C 0.157 3.843 21 N -0.698 5.698 22 C -0.209 4.209 23 H 0.064 0.936 24 C -0.021 4.021 25 N -0.938 5.938 26 Si 0.901 3.099 27 H -0.289 1.289 28 H -0.294 1.294 29 H -0.289 1.289 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.038 0.962 43 H 0.022 0.978 44 H 0.379 0.621 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.665 2.734 -18.720 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.172 4.172 6 C -0.027 4.027 7 N -0.343 5.343 8 C 0.300 3.700 9 O -0.294 6.294 10 C -0.050 4.050 11 C -0.139 4.139 12 C 0.108 3.892 13 F -0.108 7.108 14 C -0.204 4.204 15 C 0.106 3.894 16 F -0.109 7.109 17 C -0.160 4.160 18 C 0.046 3.954 19 H 0.090 0.910 20 C 0.029 3.971 21 N -0.341 5.341 22 C -0.341 4.341 23 H 0.082 0.918 24 C -0.215 4.215 25 N -0.588 5.588 26 Si 0.734 3.266 27 H -0.216 1.216 28 H -0.220 1.220 29 H -0.216 1.216 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.168 0.832 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.056 0.944 43 H 0.040 0.960 44 H 0.213 0.787 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.351 3.093 -17.968 20.054 hybrid contribution 0.379 -0.152 0.908 0.996 sum 8.730 2.941 -17.060 19.389 Atomic orbital electron populations 1.21850 0.94362 1.02201 1.02017 1.21546 0.96105 0.99898 0.94268 0.90872 1.21585 0.94967 1.00928 0.97630 1.21919 0.96441 1.01287 0.97552 1.22013 0.98847 0.97127 0.84707 1.47785 1.06429 1.62340 1.17729 1.18102 0.85026 0.82533 0.84339 1.91310 1.71269 1.40290 1.26489 1.19897 0.95330 0.92872 0.96885 1.21205 0.91463 1.00337 1.00867 1.17081 0.88724 0.83529 0.99845 1.91540 1.76614 1.52193 1.90470 1.21072 1.01784 0.92116 1.05425 1.17085 0.90209 0.82783 0.99358 1.91541 1.83206 1.49081 1.87041 1.21445 0.92806 0.99828 1.01923 1.21683 0.78067 0.99864 0.95836 0.90952 1.20990 0.96593 0.94600 0.84870 1.42194 1.72962 1.16944 1.01971 1.19101 1.30788 0.99126 0.85090 0.91764 1.24611 1.02701 0.96814 0.97397 1.69640 1.50978 1.09769 1.28424 0.86330 0.78037 0.77429 0.84829 1.21617 1.21978 1.21641 0.92529 0.91494 0.92898 0.91916 0.91767 0.91584 0.91062 0.89373 0.91463 0.83242 0.83340 0.83252 0.94447 0.96020 0.78742 0.93964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.99 37.16 0.33 -1.36 16 2 C -0.10 -1.20 2.36 -90.27 -0.21 -1.41 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.11 -1.10 5.16 -26.69 -0.14 -1.24 16 5 C -0.13 -1.21 6.08 -26.61 -0.16 -1.38 16 6 C 0.10 1.04 5.27 -3.71 -0.02 1.02 16 7 N -0.61 -9.04 2.97 -166.06 -0.49 -9.54 16 8 C 0.52 9.15 6.96 -12.33 -0.09 9.06 16 9 O -0.43 -9.80 10.93 5.32 0.06 -9.74 16 10 C -0.05 -0.67 5.09 -104.98 -0.53 -1.21 16 11 C -0.12 -1.64 9.69 -39.11 -0.38 -2.02 16 12 C 0.13 1.57 7.29 -39.49 -0.29 1.28 16 13 F -0.13 -1.61 17.26 2.25 0.04 -1.57 16 14 C -0.18 -2.01 10.00 -39.37 -0.39 -2.41 16 15 C 0.13 1.45 7.29 -39.49 -0.29 1.16 16 16 F -0.13 -1.50 17.26 2.25 0.04 -1.46 16 17 C -0.14 -1.76 7.31 -39.10 -0.29 -2.05 16 18 C 0.15 2.36 2.38 -67.37 -0.16 2.20 16 19 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 20 C 0.16 3.25 4.86 -4.04 -0.02 3.23 16 21 N -0.70 -18.22 3.30 -59.91 -0.20 -18.42 16 22 C -0.21 -6.11 9.80 -15.06 -0.15 -6.26 16 23 H 0.06 1.85 7.83 -52.49 -0.41 1.43 16 24 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 25 N -0.94 -29.58 13.06 55.49 0.72 -28.85 16 26 Si 0.90 23.62 29.55 -169.99 -5.02 18.60 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 29 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.87 6.37 -51.93 -0.33 0.54 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.87 4.42 -51.93 -0.23 0.65 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.15 2.06 8.06 -52.48 -0.42 1.64 16 40 H 0.15 1.29 8.06 -52.48 -0.42 0.86 16 41 H 0.15 1.73 6.84 -52.49 -0.36 1.37 16 42 H 0.04 0.85 6.13 -51.93 -0.32 0.53 16 43 H 0.02 0.45 6.11 -51.93 -0.32 0.14 16 44 H 0.38 10.59 7.42 -40.82 -0.30 10.29 16 45 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -33.45 362.48 -8.32 -41.78 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.05 Total: 5.82 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.88 Total: -2.08 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.03 Total: -56.81 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.06 Total: -9.74 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.08 Total: -3.02 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.02 Total: 18.60 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.45 -8.32 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268196585.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.028 kcal (2) G-P(sol) polarization free energy of solvation -33.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds