Wall clock time and date at job start Tue Mar 31 2020 21:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09007 * 109.49888 * 2 1 4 4 C 1.53042 * 109.50008 * 120.09973 * 2 1 3 5 5 C 1.53033 * 109.53733 * 58.58688 * 4 2 1 6 6 C 1.53194 * 109.31634 * 61.36692 * 5 4 2 7 7 N 1.46931 * 108.77283 * 305.36531 * 6 5 4 8 8 C 1.34772 * 120.63204 * 233.62855 * 7 6 5 9 9 O 1.21551 * 120.00165 * 183.52685 * 8 7 6 10 10 C 1.47861 * 119.99727 * 3.52753 * 8 7 6 11 11 C 1.39554 * 120.12204 * 313.24381 * 10 8 7 12 12 C 1.38207 * 119.87711 * 179.77073 * 11 10 8 13 13 F 1.35096 * 119.93608 * 180.27863 * 12 11 10 14 14 C 1.38526 * 120.11970 * 0.48742 * 12 11 10 15 15 C 1.38539 * 120.24621 * 359.79081 * 14 12 11 16 16 F 1.35097 * 119.93703 * 179.97438 * 15 14 12 17 17 C 1.38203 * 120.11960 * 359.95474 * 15 14 12 18 18 C 1.46921 * 118.73782 * 53.60865 * 7 6 5 19 19 H 1.08997 * 109.70753 * 66.24315 * 18 7 6 20 20 C 1.53002 * 109.58732 * 186.60232 * 18 7 6 21 21 N 1.46502 * 109.47044 * 284.57425 * 20 18 7 22 22 C 1.36936 * 119.99652 * 185.34460 * 21 20 18 23 23 H 1.07994 * 120.00661 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99405 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99682 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 120.00334 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.46892 * 90.00225 * 26 24 22 28 28 H 1.48501 * 109.46932 * 210.00048 * 26 24 22 29 29 H 1.48498 * 109.47136 * 329.99934 * 26 24 22 30 30 H 1.08995 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47122 * 300.06556 * 1 2 3 32 32 H 1.08998 * 109.47287 * 60.06231 * 1 2 3 33 33 H 1.08997 * 109.45967 * 178.60840 * 4 2 1 34 34 H 1.09004 * 109.45560 * 298.57970 * 4 2 1 35 35 H 1.08996 * 109.50016 * 181.31930 * 5 4 2 36 36 H 1.09006 * 109.49764 * 301.38197 * 5 4 2 37 37 H 1.08997 * 109.58711 * 65.14964 * 6 5 4 38 38 H 1.08997 * 109.58999 * 185.58195 * 6 5 4 39 39 H 1.07996 * 120.05639 * 0.02562 * 11 10 8 40 40 H 1.07997 * 119.87848 * 179.76795 * 14 12 11 41 41 H 1.07998 * 120.05980 * 180.02562 * 17 15 14 42 42 H 1.09006 * 109.47151 * 164.57324 * 20 18 7 43 43 H 1.09004 * 109.46885 * 44.57518 * 20 18 7 44 44 H 0.96998 * 119.99403 * 5.34942 * 21 20 18 45 45 H 0.97007 * 119.99813 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0408 -0.7235 1.2481 5 6 1.5030 -2.1561 1.2653 6 6 2.0140 -2.9040 0.0298 7 7 1.6515 -2.1378 -1.1703 8 6 0.9740 -2.7211 -2.1788 9 8 0.7359 -2.0951 -3.1931 10 6 0.5202 -4.1225 -2.0513 11 6 1.3968 -5.1027 -1.5841 12 6 0.9660 -6.4103 -1.4624 13 9 1.8119 -7.3591 -1.0049 14 6 -0.3304 -6.7505 -1.8127 15 6 -1.2031 -5.7825 -2.2825 16 9 -2.4659 -6.1213 -2.6228 17 6 -0.7844 -4.4710 -2.4032 18 6 2.0413 -0.7234 -1.2498 19 1 3.1272 -0.6437 -1.2995 20 6 1.4228 -0.0904 -2.4979 21 7 2.1600 -0.5304 -3.6850 22 6 1.8562 -0.0060 -4.9130 23 1 1.0730 0.7316 -5.0065 24 6 2.5544 -0.4233 -6.0378 25 7 2.2627 0.0811 -7.2181 26 14 3.9087 -1.6997 -5.8763 27 1 3.3303 -3.0581 -6.0368 28 1 4.9327 -1.4705 -6.9271 29 1 4.5396 -1.5854 -4.5369 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3634 0.5129 -0.8905 33 1 3.1305 -0.7448 1.2350 34 1 1.6985 -0.1966 2.1388 35 1 1.8481 -2.6635 2.1662 36 1 0.4132 -2.1358 1.2540 37 1 3.0979 -3.0043 0.0857 38 1 1.5554 -3.8918 -0.0151 39 1 2.4088 -4.8392 -1.3143 40 1 -0.6618 -7.7741 -1.7196 41 1 -1.4657 -3.7172 -2.7692 42 1 1.4761 0.9955 -2.4190 43 1 0.3805 -0.3978 -2.5828 44 1 2.8632 -1.1932 -3.6011 45 1 2.7504 -0.2108 -8.0042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268196587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:35 Heat of formation + Delta-G solvation = -38.199446 kcal Electronic energy + Delta-G solvation = -31046.562040 eV Core-core repulsion = 26702.334198 eV Total energy + Delta-G solvation = -4344.227843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.27898 -49.21656 -40.93008 -38.83795 -37.34010 -34.79559 -33.61253 -32.20042 -31.22851 -30.63699 -30.50401 -27.38271 -26.37809 -24.82998 -23.77587 -23.23080 -22.39533 -21.29969 -20.38397 -18.89977 -18.14838 -17.43057 -17.17931 -16.80757 -16.33091 -16.21403 -15.99301 -15.60337 -15.54876 -15.26128 -14.98283 -14.56585 -14.25447 -14.05221 -13.94638 -13.85877 -13.21028 -12.98570 -12.81421 -12.66506 -12.58010 -12.25104 -12.21449 -12.14081 -11.99600 -11.70641 -11.49703 -11.25668 -11.05546 -10.76782 -10.74849 -10.44809 -10.27263 -9.98575 -9.41936 -9.36934 -9.00534 -8.83962 -8.66334 -8.29402 -6.88084 -5.58043 -2.85007 0.47082 0.67947 2.70760 2.95261 3.29088 3.45887 3.51392 3.54483 3.59737 4.13944 4.22890 4.47142 4.57547 4.62505 4.73266 4.75945 4.77087 4.78948 4.90923 5.15055 5.21570 5.28985 5.40519 5.46850 5.58978 5.59969 5.61729 5.66572 5.70131 5.73400 5.74514 5.80886 5.82960 5.88111 5.97272 6.06308 6.16894 6.21065 6.39387 6.42032 6.48632 6.74404 7.09419 7.57497 8.17512 8.48388 8.61105 9.41300 10.14688 10.35356 11.61773 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008611 B = 0.005331 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3251.014211 B = 5251.253126 C = 6866.586268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.083 0.917 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.094 3.906 7 N -0.604 5.604 8 C 0.516 3.484 9 O -0.430 6.430 10 C -0.052 4.052 11 C -0.145 4.145 12 C 0.125 3.875 13 F -0.130 7.130 14 C -0.182 4.182 15 C 0.130 3.870 16 F -0.128 7.128 17 C -0.116 4.116 18 C 0.143 3.857 19 H 0.072 0.928 20 C 0.164 3.836 21 N -0.726 5.726 22 C -0.210 4.210 23 H 0.086 0.914 24 C -0.003 4.003 25 N -0.942 5.942 26 Si 0.883 3.117 27 H -0.288 1.288 28 H -0.295 1.295 29 H -0.283 1.283 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.026 0.974 43 H 0.051 0.949 44 H 0.355 0.645 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.610 -10.870 21.810 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.101 0.899 4 C -0.151 4.151 5 C -0.174 4.174 6 C -0.029 4.029 7 N -0.341 5.341 8 C 0.300 3.700 9 O -0.299 6.299 10 C -0.055 4.055 11 C -0.164 4.164 12 C 0.106 3.894 13 F -0.108 7.108 14 C -0.202 4.202 15 C 0.110 3.890 16 F -0.106 7.106 17 C -0.136 4.136 18 C 0.040 3.960 19 H 0.090 0.910 20 C 0.037 3.963 21 N -0.370 5.370 22 C -0.341 4.341 23 H 0.104 0.896 24 C -0.197 4.197 25 N -0.592 5.592 26 Si 0.715 3.285 27 H -0.215 1.215 28 H -0.222 1.222 29 H -0.210 1.210 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.167 0.833 40 H 0.168 0.832 41 H 0.170 0.830 42 H 0.044 0.956 43 H 0.069 0.931 44 H 0.188 0.812 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.874 -10.409 21.034 23.787 hybrid contribution 1.035 -1.453 0.056 1.784 sum -2.840 -11.862 21.090 24.363 Atomic orbital electron populations 1.21863 0.94744 1.01986 1.01740 1.21468 0.96824 0.99542 0.94039 0.89881 1.21545 1.00481 0.95374 0.97718 1.21958 1.01780 0.96322 0.97364 1.22080 1.00214 0.95876 0.84730 1.47805 1.57264 1.11219 1.17787 1.18175 0.81647 0.85702 0.84457 1.91327 1.51170 1.60696 1.26690 1.19884 0.93297 0.95036 0.97331 1.21451 1.01761 0.91035 1.02145 1.17073 0.87582 0.85733 0.99037 1.91544 1.69808 1.63230 1.86230 1.21105 0.92972 1.01252 1.04852 1.17094 0.79981 0.92634 0.99282 1.91553 1.36505 1.92847 1.89711 1.21244 0.96520 0.95360 1.00453 1.21631 0.99024 0.79042 0.96304 0.91040 1.20942 0.96737 0.94876 0.83761 1.42560 1.41175 1.49404 1.03887 1.18991 1.14774 1.17168 0.83160 0.89581 1.24559 0.99932 0.99965 0.95272 1.69700 1.44443 1.47234 0.97869 0.86545 0.82783 0.82826 0.76315 1.21500 1.22168 1.20954 0.92540 0.93159 0.91826 0.91857 0.91767 0.91116 0.91029 0.91449 0.89168 0.83279 0.83216 0.82981 0.95647 0.93149 0.81213 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.25 37.15 0.31 -1.34 16 2 C -0.10 -1.12 2.76 -90.50 -0.25 -1.37 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.11 -1.00 5.43 -26.69 -0.14 -1.14 16 5 C -0.14 -1.11 5.74 -26.61 -0.15 -1.27 16 6 C 0.09 0.91 5.23 -3.71 -0.02 0.89 16 7 N -0.60 -8.25 2.41 -166.32 -0.40 -8.65 16 8 C 0.52 8.47 6.98 -12.32 -0.09 8.38 16 9 O -0.43 -9.30 10.93 5.32 0.06 -9.25 16 10 C -0.05 -0.70 5.14 -104.98 -0.54 -1.24 16 11 C -0.14 -1.65 7.30 -39.10 -0.29 -1.94 16 12 C 0.13 1.34 7.29 -39.49 -0.29 1.05 16 13 F -0.13 -1.37 17.26 2.25 0.04 -1.34 16 14 C -0.18 -1.85 10.00 -39.36 -0.39 -2.24 16 15 C 0.13 1.50 7.29 -39.48 -0.29 1.21 16 16 F -0.13 -1.51 17.26 2.25 0.04 -1.47 16 17 C -0.12 -1.50 9.68 -39.11 -0.38 -1.88 16 18 C 0.14 2.11 2.61 -67.60 -0.18 1.94 16 19 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 20 C 0.16 3.23 3.87 -4.04 -0.02 3.22 16 21 N -0.73 -17.97 3.11 -59.90 -0.19 -18.16 16 22 C -0.21 -6.24 10.28 -15.06 -0.15 -6.39 16 23 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 24 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 25 N -0.94 -31.04 13.97 55.49 0.78 -30.26 16 26 Si 0.88 23.70 27.74 -169.99 -4.71 18.99 16 27 H -0.29 -7.82 7.11 56.52 0.40 -7.41 16 28 H -0.29 -7.94 7.11 56.52 0.40 -7.54 16 29 H -0.28 -7.12 6.52 56.52 0.37 -6.75 16 30 H 0.06 0.65 5.97 -51.93 -0.31 0.34 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.83 6.70 -51.93 -0.35 0.48 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.62 6.34 -51.93 -0.33 0.29 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.80 4.33 -51.93 -0.22 0.57 16 39 H 0.15 1.51 6.70 -52.49 -0.35 1.16 16 40 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.15 2.00 8.06 -52.49 -0.42 1.57 16 42 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 43 H 0.05 1.07 5.26 -51.93 -0.27 0.80 16 44 H 0.36 8.83 5.29 -40.82 -0.22 8.61 16 45 H 0.26 8.04 8.31 -40.82 -0.34 7.70 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -34.61 354.87 -7.87 -42.49 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.87 Total: 4.62 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -2.96 Total: -2.32 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.19 Total: -57.07 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.06 Total: -9.25 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.08 Total: -2.81 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -4.71 Total: 18.99 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.61 -7.87 -42.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268196587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.286 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds