Wall clock time and date at job start Tue Mar 31 2020 21:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.50122 * 2 1 4 4 C 1.53044 * 109.49830 * 120.07125 * 2 1 3 5 5 C 1.53039 * 109.53743 * 181.34717 * 4 2 1 6 6 C 1.53183 * 109.31403 * 298.63281 * 5 4 2 7 7 N 1.46919 * 108.77906 * 54.63627 * 6 5 4 8 8 C 1.34778 * 120.63218 * 126.36823 * 7 6 5 9 9 O 1.21550 * 119.99946 * 186.47350 * 8 7 6 10 10 C 1.47851 * 119.99971 * 6.46831 * 8 7 6 11 11 C 1.39549 * 120.12190 * 216.78852 * 10 8 7 12 12 C 1.38206 * 119.87780 * 180.02562 * 11 10 8 13 13 F 1.35103 * 119.93894 * 179.97438 * 12 11 10 14 14 C 1.38528 * 120.12038 * 0.02562 * 12 11 10 15 15 C 1.38530 * 120.24561 * 359.97438 * 14 12 11 16 16 F 1.35103 * 119.93929 * 179.97438 * 15 14 12 17 17 C 1.38209 * 120.12064 * 359.97438 * 15 14 12 18 18 C 1.46926 * 118.74021 * 306.64326 * 7 6 5 19 19 H 1.08998 * 109.58689 * 293.57081 * 18 7 6 20 20 C 1.52997 * 109.59155 * 173.14107 * 18 7 6 21 21 N 1.46500 * 109.46798 * 69.40346 * 20 18 7 22 22 C 1.36940 * 119.99782 * 175.33136 * 21 20 18 23 23 H 1.08000 * 120.00039 * 0.02562 * 22 21 20 24 24 C 1.38817 * 120.00163 * 179.97438 * 22 21 20 25 25 N 1.31613 * 120.00152 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 119.99439 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.46898 * 90.00185 * 26 24 22 28 28 H 1.48499 * 109.46786 * 209.99679 * 26 24 22 29 29 H 1.48492 * 109.47547 * 329.99871 * 26 24 22 30 30 H 1.08991 * 109.47402 * 299.93179 * 1 2 3 31 31 H 1.09006 * 109.47109 * 59.93683 * 1 2 3 32 32 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46109 * 61.32634 * 4 2 1 34 34 H 1.08998 * 109.45471 * 301.37074 * 4 2 1 35 35 H 1.09003 * 109.49114 * 178.67819 * 5 4 2 36 36 H 1.09000 * 109.49499 * 58.58943 * 5 4 2 37 37 H 1.09001 * 109.58838 * 294.84623 * 6 5 4 38 38 H 1.09007 * 109.70374 * 174.49404 * 6 5 4 39 39 H 1.07997 * 120.06355 * 359.97438 * 11 10 8 40 40 H 1.08005 * 119.87741 * 179.72825 * 14 12 11 41 41 H 1.07997 * 120.05889 * 180.02562 * 17 15 14 42 42 H 1.09003 * 109.47283 * 189.40364 * 20 18 7 43 43 H 1.09007 * 109.47208 * 309.40299 * 20 18 7 44 44 H 0.96993 * 120.00490 * 355.33312 * 21 20 18 45 45 H 0.96998 * 120.00155 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7229 1.2485 5 6 3.5708 -0.6941 1.2665 6 6 4.1058 -1.4256 0.0315 7 7 3.5053 -0.8284 -1.1690 8 6 4.2819 -0.3845 -2.1771 9 8 3.7832 0.2129 -3.1108 10 6 5.7406 -0.6242 -2.1473 11 6 6.6197 0.3460 -2.6302 12 6 7.9823 0.1165 -2.6003 13 9 8.8345 1.0547 -3.0680 14 6 8.4757 -1.0743 -2.0927 15 6 7.6075 -2.0409 -1.6120 16 9 8.0954 -3.2002 -1.1188 17 6 6.2432 -1.8214 -1.6361 18 6 2.0422 -0.7186 -1.2471 19 1 1.6032 -1.7149 -1.2975 20 6 1.6534 0.0800 -2.4928 21 7 1.9536 -0.7076 -3.6911 22 6 1.6011 -0.2350 -4.9271 23 1 1.1023 0.7185 -5.0185 24 6 1.8860 -0.9810 -6.0626 25 7 1.5477 -0.5266 -7.2505 26 14 2.7494 -2.6299 -5.9043 27 1 1.7373 -3.7061 -5.7536 28 1 3.5623 -2.8817 -7.1213 29 1 3.6349 -2.6127 -4.7124 30 1 -0.3634 0.5127 0.8905 31 1 -0.3634 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6972 -1.7572 1.2354 34 1 1.6576 -0.2244 2.1389 35 1 3.9333 -1.1886 2.1678 36 1 3.9153 0.3399 1.2547 37 1 3.8386 -2.4808 0.0874 38 1 5.1903 -1.3252 -0.0139 39 1 6.2361 1.2742 -3.0273 40 1 9.5409 -1.2514 -2.0753 41 1 5.5673 -2.5755 -1.2607 42 1 0.5871 0.3039 -2.4628 43 1 2.2195 1.0112 -2.5188 44 1 2.4019 -1.5638 -3.6090 45 1 1.7464 -1.0480 -8.0439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268196588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:37 Heat of formation + Delta-G solvation = -59.707092 kcal Electronic energy + Delta-G solvation = -30935.910862 eV Core-core repulsion = 26590.750378 eV Total energy + Delta-G solvation = -4345.160484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.15748 -50.11818 -42.01457 -39.77017 -38.45310 -36.55212 -35.00652 -33.80891 -32.41061 -32.22087 -31.56004 -28.79750 -27.21493 -26.17741 -24.78025 -24.04680 -23.67952 -22.39982 -21.52971 -20.74301 -19.75652 -18.77538 -18.36586 -17.73119 -17.34442 -17.19485 -16.99803 -16.73539 -16.53124 -16.43241 -15.97910 -15.89991 -15.55767 -15.42176 -15.17774 -14.89511 -14.71270 -14.15619 -14.03312 -14.00314 -13.70572 -13.54241 -13.23147 -13.14813 -13.08257 -12.99935 -12.87885 -12.72391 -12.43808 -12.19272 -11.91114 -11.83255 -11.67078 -11.54005 -11.14387 -10.95837 -10.36129 -10.04815 -9.91328 -9.61609 -8.93624 -7.96310 -5.19639 -0.51361 -0.25040 1.27910 1.34108 1.40189 1.62950 1.86280 2.29503 2.50088 2.67379 3.17941 3.26486 3.35730 3.56871 3.59980 3.71586 3.76938 3.85674 3.90906 4.06768 4.19435 4.23326 4.30233 4.34322 4.51836 4.55385 4.60451 4.71996 4.77599 4.78291 4.81633 4.86198 4.88726 4.97535 5.00364 5.12994 5.24241 5.28340 5.30283 5.42965 5.50791 5.53972 5.73421 5.79879 6.26537 6.43362 7.15062 7.27579 7.93806 8.12080 9.27262 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008061 B = 0.005780 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3472.763503 B = 4843.155516 C = 6946.215687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.063 0.937 4 C -0.108 4.108 5 C -0.129 4.129 6 C 0.087 3.913 7 N -0.604 5.604 8 C 0.514 3.486 9 O -0.496 6.496 10 C -0.072 4.072 11 C -0.125 4.125 12 C 0.124 3.876 13 F -0.130 7.130 14 C -0.161 4.161 15 C 0.130 3.870 16 F -0.123 7.123 17 C -0.133 4.133 18 C 0.150 3.850 19 H 0.077 0.923 20 C 0.163 3.837 21 N -0.723 5.723 22 C -0.193 4.193 23 H 0.047 0.953 24 C -0.075 4.075 25 N -0.994 5.994 26 Si 0.954 3.046 27 H -0.275 1.275 28 H -0.300 1.300 29 H -0.266 1.266 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.136 0.864 40 H 0.180 0.820 41 H 0.168 0.832 42 H 0.027 0.973 43 H 0.026 0.974 44 H 0.357 0.643 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.660 -4.594 25.357 28.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.082 0.918 4 C -0.145 4.145 5 C -0.167 4.167 6 C -0.034 4.034 7 N -0.340 5.340 8 C 0.300 3.700 9 O -0.370 6.370 10 C -0.076 4.076 11 C -0.145 4.145 12 C 0.105 3.895 13 F -0.109 7.109 14 C -0.180 4.180 15 C 0.111 3.889 16 F -0.101 7.101 17 C -0.153 4.153 18 C 0.047 3.953 19 H 0.095 0.905 20 C 0.037 3.963 21 N -0.366 5.366 22 C -0.325 4.325 23 H 0.065 0.935 24 C -0.265 4.265 25 N -0.647 5.647 26 Si 0.783 3.217 27 H -0.201 1.201 28 H -0.228 1.228 29 H -0.191 1.191 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.154 0.846 40 H 0.197 0.803 41 H 0.185 0.815 42 H 0.045 0.955 43 H 0.044 0.956 44 H 0.189 0.811 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.339 -4.123 24.735 27.521 hybrid contribution 0.606 -0.469 -1.096 1.338 sum 11.945 -4.592 23.639 26.881 Atomic orbital electron populations 1.21836 0.93644 1.02619 1.02185 1.21347 0.96626 0.99434 0.93767 0.91846 1.21575 0.95245 1.01237 0.96463 1.21921 0.96001 1.01114 0.97668 1.22470 0.99467 0.98145 0.83359 1.47938 1.05993 1.61568 1.18471 1.18598 0.86305 0.81923 0.83127 1.91247 1.72573 1.38491 1.34652 1.19618 0.93380 0.94969 0.99614 1.21241 0.91623 1.01297 1.00365 1.17064 0.86420 0.87436 0.98601 1.91548 1.69648 1.63561 1.86131 1.21358 1.03151 0.91958 1.01570 1.16979 0.90996 0.82838 0.98132 1.91572 1.88203 1.45371 1.84943 1.21634 0.94701 0.98016 1.00914 1.21449 0.79044 0.99504 0.95322 0.90545 1.21007 0.96177 0.94776 0.84351 1.42527 1.70522 1.21325 1.02249 1.18938 1.27375 1.01678 0.84513 0.93519 1.25338 1.03620 1.02757 0.94734 1.69884 1.56332 1.40680 0.97792 0.85400 0.78747 0.81018 0.76559 1.20113 1.22763 1.19110 0.90482 0.93803 0.91827 0.90673 0.89786 0.87751 0.92271 0.89338 0.88190 0.84611 0.80302 0.81453 0.95532 0.95649 0.81089 0.93866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.98 71.98 0.65 -2.25 16 2 C -0.09 -1.95 2.32 -10.86 -0.03 -1.97 16 3 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.11 -1.48 5.17 30.62 0.16 -1.32 16 5 C -0.13 -1.63 6.08 30.67 0.19 -1.44 16 6 C 0.09 1.42 4.80 86.36 0.41 1.83 16 7 N -0.60 -16.29 2.98 -799.21 -2.38 -18.67 16 8 C 0.51 17.71 6.75 86.79 0.59 18.30 16 9 O -0.50 -22.96 10.67 -3.87 -0.04 -23.00 16 10 C -0.07 -2.02 5.23 -20.10 -0.11 -2.13 16 11 C -0.13 -3.49 9.59 22.58 0.22 -3.28 16 12 C 0.12 2.88 7.29 22.33 0.16 3.04 16 13 F -0.13 -3.13 17.26 44.97 0.78 -2.35 16 14 C -0.16 -2.93 10.00 22.41 0.22 -2.71 16 15 C 0.13 2.45 7.29 22.33 0.16 2.61 16 16 F -0.12 -2.17 17.26 44.97 0.78 -1.39 16 17 C -0.13 -2.84 7.34 22.58 0.17 -2.67 16 18 C 0.15 4.35 2.37 44.83 0.11 4.45 16 19 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 20 C 0.16 6.73 4.79 86.38 0.41 7.14 16 21 N -0.72 -36.73 3.04 -343.44 -1.04 -37.77 16 22 C -0.19 -12.01 10.18 84.03 0.86 -11.15 16 23 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 24 C -0.07 -4.78 5.50 84.86 0.47 -4.31 16 25 N -0.99 -68.31 13.97 21.65 0.30 -68.01 16 26 Si 0.95 49.89 27.74 68.60 1.90 51.80 16 27 H -0.27 -13.65 7.11 99.48 0.71 -12.94 16 28 H -0.30 -15.93 7.11 99.48 0.71 -15.23 16 29 H -0.27 -12.96 6.52 99.48 0.65 -12.31 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.04 1.08 6.42 -2.38 -0.02 1.06 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 1.14 8.06 -2.39 -0.02 1.12 16 38 H 0.10 1.47 4.60 -2.38 -0.01 1.46 16 39 H 0.14 4.18 8.02 -2.91 -0.02 4.15 16 40 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 41 H 0.17 2.92 6.23 -2.91 -0.02 2.90 16 42 H 0.03 1.12 6.24 -2.39 -0.01 1.10 16 43 H 0.03 1.19 6.29 -2.38 -0.02 1.18 16 44 H 0.36 17.62 4.95 -92.71 -0.46 17.16 16 45 H 0.25 16.57 8.31 -92.71 -0.77 15.80 16 Total: -1.00 -80.49 357.71 5.44 -75.05 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.51 Total: 20.22 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 4.64 Total: 4.13 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -3.12 Total: -124.45 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.04 Total: -23.00 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 1.55 Total: -3.74 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 1.90 Total: 51.80 kcal Total: -80.49 5.44 -75.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268196588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.340 kcal (2) G-P(sol) polarization free energy of solvation -80.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds