Wall clock time and date at job start Tue Mar 31 2020 21:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49741 * 2 1 4 4 C 1.53042 * 109.49901 * 239.92845 * 2 1 3 5 5 C 1.53041 * 109.53506 * 178.65310 * 4 2 1 6 6 C 1.53193 * 109.31536 * 61.36622 * 5 4 2 7 7 N 1.46925 * 108.77381 * 305.36405 * 6 5 4 8 8 C 1.34778 * 120.62922 * 233.60959 * 7 6 5 9 9 O 1.21572 * 120.00174 * 174.09291 * 8 7 6 10 10 C 1.47698 * 119.99885 * 354.08470 * 8 7 6 11 11 C 1.39656 * 120.15961 * 320.44057 * 10 8 7 12 12 C 1.38061 * 119.85228 * 179.97438 * 11 10 8 13 13 F 1.35099 * 119.91604 * 180.02562 * 12 11 10 14 14 C 1.38654 * 120.16588 * 0.02562 * 12 11 10 15 15 C 1.38184 * 120.31710 * 359.97336 * 14 12 11 16 16 C 1.38315 * 120.14381 * 359.79543 * 15 14 12 17 17 F 1.35098 * 120.08495 * 180.25486 * 16 15 14 18 18 C 1.46921 * 118.73929 * 53.60765 * 7 6 5 19 19 H 1.09002 * 109.58747 * 66.17932 * 18 7 6 20 20 C 1.53003 * 109.58599 * 186.60121 * 18 7 6 21 21 N 1.46500 * 109.47354 * 290.76038 * 20 18 7 22 22 C 1.36939 * 120.00069 * 185.25640 * 21 20 18 23 23 H 1.08000 * 119.99646 * 0.02562 * 22 21 20 24 24 C 1.38806 * 119.99817 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00240 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99946 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46872 * 59.99840 * 26 24 22 28 28 H 1.48498 * 109.47159 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46796 * 299.99921 * 26 24 22 30 30 H 1.08998 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47226 * 300.00219 * 1 2 3 32 32 H 1.08998 * 109.47122 * 60.00649 * 1 2 3 33 33 H 1.08994 * 109.45893 * 298.67363 * 4 2 1 34 34 H 1.08992 * 109.45849 * 58.63465 * 4 2 1 35 35 H 1.09003 * 109.49619 * 181.31922 * 5 4 2 36 36 H 1.09004 * 109.49761 * 301.38012 * 5 4 2 37 37 H 1.08998 * 109.58299 * 65.15066 * 6 5 4 38 38 H 1.09005 * 109.58533 * 185.43239 * 6 5 4 39 39 H 1.07999 * 120.07021 * 359.95278 * 11 10 8 40 40 H 1.08006 * 119.84341 * 180.02562 * 14 12 11 41 41 H 1.08003 * 119.92712 * 180.02562 * 15 14 12 42 42 H 1.09001 * 109.46989 * 50.76643 * 20 18 7 43 43 H 1.09000 * 109.47109 * 170.76036 * 20 18 7 44 44 H 0.96998 * 119.99878 * 5.26170 * 21 20 18 45 45 H 0.96998 * 120.00193 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7229 -1.2485 5 6 3.5709 -0.6941 -1.2664 6 6 4.1060 -1.4255 -0.0313 7 7 3.5053 -0.8282 1.1692 8 6 4.2818 -0.3847 2.1775 9 8 3.7817 0.2039 3.1163 10 6 5.7405 -0.6138 2.1420 11 6 6.2488 -1.8283 1.6759 12 6 7.6134 -2.0355 1.6450 13 9 8.1066 -3.2096 1.1939 14 6 8.4790 -1.0416 2.0757 15 6 7.9836 0.1626 2.5381 16 6 6.6190 0.3859 2.5703 17 9 6.1361 1.5656 3.0178 18 6 2.0420 -0.7236 1.2495 19 1 1.6064 -1.7216 1.2980 20 6 1.6523 0.0705 2.4979 21 7 1.9603 -0.7175 3.6939 22 6 1.5981 -0.2549 4.9308 23 1 1.0850 0.6908 5.0245 24 6 1.8905 -1.0013 6.0639 25 7 2.5154 -2.1540 5.9496 26 14 1.3957 -0.3705 7.7512 27 1 -0.0787 -0.2013 7.8035 28 1 1.8186 -1.3460 8.7879 29 1 2.0533 0.9368 8.0032 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.6972 -1.7572 -1.2353 34 1 1.6578 -0.2245 -2.1389 35 1 3.9335 -1.1886 -2.1676 36 1 3.9155 0.3400 -1.2552 37 1 3.8387 -2.4807 -0.0873 38 1 5.1905 -1.3250 0.0116 39 1 5.5758 -2.6036 1.3408 40 1 9.5457 -1.2092 2.0488 41 1 8.6636 0.9326 2.8717 42 1 2.2131 1.0048 2.5239 43 1 0.5846 0.2884 2.4714 44 1 2.4210 -1.5670 3.6096 45 1 2.7200 -2.6755 6.7415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271716556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:41 Heat of formation + Delta-G solvation = -41.688232 kcal Electronic energy + Delta-G solvation = -31182.499763 eV Core-core repulsion = 26838.120635 eV Total energy + Delta-G solvation = -4344.379128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.99454 -48.72725 -40.50002 -38.55478 -37.08125 -34.70887 -33.54255 -32.12870 -31.42681 -30.25869 -29.90833 -27.08093 -26.07672 -24.52120 -23.57671 -22.77628 -22.35312 -21.00188 -20.34861 -19.39580 -17.58314 -17.46663 -17.08485 -16.82045 -16.13581 -15.92023 -15.44514 -15.19673 -14.88929 -14.72143 -14.50329 -14.41880 -14.17229 -13.88216 -13.68680 -13.45853 -13.11338 -12.92480 -12.87620 -12.59139 -12.42829 -12.31649 -12.04525 -11.88832 -11.68693 -11.48461 -11.27595 -10.96776 -10.86941 -10.68222 -10.60879 -10.57784 -10.17943 -9.83068 -9.51999 -9.24575 -8.77007 -8.62005 -8.37115 -8.10041 -6.53520 -5.57579 -2.75145 0.68817 0.91032 2.98348 3.25371 3.54248 3.58975 3.60769 3.62628 4.09571 4.17079 4.46597 4.60544 4.72697 4.75009 4.79993 4.88714 4.93565 5.02391 5.07084 5.30786 5.42712 5.51774 5.58870 5.69961 5.73469 5.75748 5.78877 5.79526 5.83677 5.84212 5.91081 5.93971 5.98272 6.00668 6.11607 6.16565 6.31941 6.43940 6.58225 6.63170 6.69328 6.93586 7.27720 7.85433 7.86539 8.60526 8.82011 9.71634 10.30637 10.64728 11.65963 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008336 B = 0.005597 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.161780 B = 5001.736326 C = 7166.117736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.134 4.134 6 C 0.100 3.900 7 N -0.610 5.610 8 C 0.510 3.490 9 O -0.419 6.419 10 C -0.114 4.114 11 C -0.102 4.102 12 C 0.080 3.920 13 F -0.136 7.136 14 C -0.116 4.116 15 C -0.133 4.133 16 C 0.137 3.863 17 F -0.117 7.117 18 C 0.150 3.850 19 H 0.070 0.930 20 C 0.156 3.844 21 N -0.693 5.693 22 C -0.207 4.207 23 H 0.066 0.934 24 C -0.021 4.021 25 N -0.936 5.936 26 Si 0.903 3.097 27 H -0.289 1.289 28 H -0.293 1.293 29 H -0.288 1.288 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.042 0.958 43 H 0.022 0.978 44 H 0.379 0.621 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.826 1.552 -18.104 20.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.172 4.172 6 C -0.023 4.023 7 N -0.347 5.347 8 C 0.294 3.706 9 O -0.286 6.286 10 C -0.119 4.119 11 C -0.121 4.121 12 C 0.060 3.940 13 F -0.115 7.115 14 C -0.135 4.135 15 C -0.152 4.152 16 C 0.116 3.884 17 F -0.095 7.095 18 C 0.047 3.953 19 H 0.088 0.912 20 C 0.029 3.971 21 N -0.335 5.335 22 C -0.339 4.339 23 H 0.084 0.916 24 C -0.216 4.216 25 N -0.586 5.586 26 Si 0.735 3.265 27 H -0.216 1.216 28 H -0.219 1.219 29 H -0.216 1.216 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.168 0.832 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.060 0.940 43 H 0.039 0.961 44 H 0.212 0.788 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.442 2.009 -17.372 19.419 hybrid contribution 0.131 -0.176 0.947 0.972 sum 8.573 1.833 -16.425 18.618 Atomic orbital electron populations 1.21839 0.94423 1.02101 1.02002 1.21478 0.96031 1.00046 0.94363 0.90853 1.21573 0.94987 1.00852 0.97606 1.21925 0.96440 1.01313 0.97547 1.21955 0.98629 0.96959 0.84786 1.47651 1.06194 1.63144 1.17741 1.17842 0.84769 0.84333 0.83665 1.91247 1.70877 1.34916 1.31572 1.20163 0.95532 0.94030 1.02152 1.21309 0.93883 0.97496 0.99429 1.17479 0.91817 0.82859 1.01827 1.91514 1.88121 1.44986 1.86851 1.21015 1.00540 0.92334 0.99629 1.20923 0.93304 0.98631 1.02339 1.17652 0.91370 0.82192 0.97195 1.91590 1.88629 1.43324 1.85957 1.21546 0.78330 0.99610 0.95814 0.91189 1.21025 0.96181 0.95290 0.84642 1.42304 1.68053 1.22184 1.00964 1.19131 1.28337 1.02274 0.84191 0.91621 1.24627 1.02106 0.97399 0.97423 1.69641 1.47061 1.13892 1.27996 0.86304 0.77853 0.77617 0.84716 1.21580 1.21947 1.21555 0.92584 0.91576 0.92886 0.91812 0.91951 0.91093 0.91616 0.91683 0.89598 0.83174 0.83711 0.83414 0.94034 0.96073 0.78751 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.98 37.16 0.33 -1.40 16 2 C -0.10 -1.28 2.34 -90.50 -0.21 -1.49 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 4 C -0.11 -1.15 5.17 -26.69 -0.14 -1.29 16 5 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 6 C 0.10 1.17 4.86 -3.71 -0.02 1.15 16 7 N -0.61 -9.79 2.97 -166.38 -0.49 -10.29 16 8 C 0.51 9.89 6.56 -12.40 -0.08 9.81 16 9 O -0.42 -10.26 10.05 5.30 0.05 -10.21 16 10 C -0.11 -1.87 5.15 -104.92 -0.54 -2.41 16 11 C -0.10 -1.39 7.35 -39.12 -0.29 -1.68 16 12 C 0.08 0.97 7.29 -39.49 -0.29 0.68 16 13 F -0.14 -1.64 17.26 2.25 0.04 -1.61 16 14 C -0.12 -1.22 10.01 -39.45 -0.39 -1.62 16 15 C -0.13 -1.56 10.01 -39.57 -0.40 -1.96 16 16 C 0.14 2.15 7.24 -38.97 -0.28 1.87 16 17 F -0.12 -2.13 16.24 2.25 0.04 -2.09 16 18 C 0.15 2.50 2.39 -67.60 -0.16 2.34 16 19 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 20 C 0.16 3.35 4.79 -4.04 -0.02 3.33 16 21 N -0.69 -18.46 3.23 -59.91 -0.19 -18.65 16 22 C -0.21 -6.15 9.72 -15.06 -0.15 -6.30 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 25 N -0.94 -29.68 13.06 55.49 0.72 -28.95 16 26 Si 0.90 23.85 29.55 -169.99 -5.02 18.83 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 28 H -0.29 -7.77 7.11 56.52 0.40 -7.36 16 29 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.88 6.44 -51.93 -0.33 0.54 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.09 0.94 4.72 -51.93 -0.25 0.69 16 39 H 0.15 1.89 6.52 -52.49 -0.34 1.55 16 40 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 42 H 0.04 0.99 6.32 -51.93 -0.33 0.66 16 43 H 0.02 0.45 6.26 -51.93 -0.33 0.13 16 44 H 0.38 10.74 7.04 -40.82 -0.29 10.45 16 45 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 359.92 15.07 5.42 5.42 Total: -1.00 -34.69 359.92 -8.38 -43.07 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.06 Total: 5.65 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.89 Total: -1.18 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.04 Total: -57.89 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.05 Total: -10.21 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.08 Total: -3.70 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -5.02 Total: 18.83 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.69 -8.38 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271716556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.384 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds