Wall clock time and date at job start Tue Mar 31 2020 21:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.49741 * 2 1 4 4 C 1.53042 * 109.49901 * 239.92845 * 2 1 3 5 5 C 1.53041 * 109.53506 * 178.65310 * 4 2 1 6 6 C 1.53193 * 109.31536 * 61.36622 * 5 4 2 7 7 N 1.46925 * 108.77381 * 305.36405 * 6 5 4 8 8 C 1.34778 * 120.62922 * 233.60959 * 7 6 5 9 9 O 1.21572 * 120.00174 * 174.09291 * 8 7 6 10 10 C 1.47698 * 119.99885 * 354.08470 * 8 7 6 11 11 C 1.39656 * 120.15961 * 320.44057 * 10 8 7 12 12 C 1.38061 * 119.85228 * 179.97438 * 11 10 8 13 13 F 1.35099 * 119.91604 * 180.02562 * 12 11 10 14 14 C 1.38654 * 120.16588 * 0.02562 * 12 11 10 15 15 C 1.38184 * 120.31710 * 359.97336 * 14 12 11 16 16 C 1.38315 * 120.14381 * 359.79543 * 15 14 12 17 17 F 1.35098 * 120.08495 * 180.25486 * 16 15 14 18 18 C 1.46921 * 118.73929 * 53.60765 * 7 6 5 19 19 H 1.09002 * 109.58747 * 66.17932 * 18 7 6 20 20 C 1.53003 * 109.58599 * 186.60121 * 18 7 6 21 21 N 1.46500 * 109.47354 * 290.76038 * 20 18 7 22 22 C 1.36939 * 120.00069 * 185.25640 * 21 20 18 23 23 H 1.08000 * 119.99646 * 0.02562 * 22 21 20 24 24 C 1.38806 * 119.99817 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00240 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99946 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46872 * 59.99840 * 26 24 22 28 28 H 1.48498 * 109.47159 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.46796 * 299.99921 * 26 24 22 30 30 H 1.08998 * 109.47093 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47226 * 300.00219 * 1 2 3 32 32 H 1.08998 * 109.47122 * 60.00649 * 1 2 3 33 33 H 1.08994 * 109.45893 * 298.67363 * 4 2 1 34 34 H 1.08992 * 109.45849 * 58.63465 * 4 2 1 35 35 H 1.09003 * 109.49619 * 181.31922 * 5 4 2 36 36 H 1.09004 * 109.49761 * 301.38012 * 5 4 2 37 37 H 1.08998 * 109.58299 * 65.15066 * 6 5 4 38 38 H 1.09005 * 109.58533 * 185.43239 * 6 5 4 39 39 H 1.07999 * 120.07021 * 359.95278 * 11 10 8 40 40 H 1.08006 * 119.84341 * 180.02562 * 14 12 11 41 41 H 1.08003 * 119.92712 * 180.02562 * 15 14 12 42 42 H 1.09001 * 109.46989 * 50.76643 * 20 18 7 43 43 H 1.09000 * 109.47109 * 170.76036 * 20 18 7 44 44 H 0.96998 * 119.99878 * 5.26170 * 21 20 18 45 45 H 0.96998 * 120.00193 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7229 -1.2485 5 6 3.5709 -0.6941 -1.2664 6 6 4.1060 -1.4255 -0.0313 7 7 3.5053 -0.8282 1.1692 8 6 4.2818 -0.3847 2.1775 9 8 3.7817 0.2039 3.1163 10 6 5.7405 -0.6138 2.1420 11 6 6.2488 -1.8283 1.6759 12 6 7.6134 -2.0355 1.6450 13 9 8.1066 -3.2096 1.1939 14 6 8.4790 -1.0416 2.0757 15 6 7.9836 0.1626 2.5381 16 6 6.6190 0.3859 2.5703 17 9 6.1361 1.5656 3.0178 18 6 2.0420 -0.7236 1.2495 19 1 1.6064 -1.7216 1.2980 20 6 1.6523 0.0705 2.4979 21 7 1.9603 -0.7175 3.6939 22 6 1.5981 -0.2549 4.9308 23 1 1.0850 0.6908 5.0245 24 6 1.8905 -1.0013 6.0639 25 7 2.5154 -2.1540 5.9496 26 14 1.3957 -0.3705 7.7512 27 1 -0.0787 -0.2013 7.8035 28 1 1.8186 -1.3460 8.7879 29 1 2.0533 0.9368 8.0032 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.6972 -1.7572 -1.2353 34 1 1.6578 -0.2245 -2.1389 35 1 3.9335 -1.1886 -2.1676 36 1 3.9155 0.3400 -1.2552 37 1 3.8387 -2.4807 -0.0873 38 1 5.1905 -1.3250 0.0116 39 1 5.5758 -2.6036 1.3408 40 1 9.5457 -1.2092 2.0488 41 1 8.6636 0.9326 2.8717 42 1 2.2131 1.0048 2.5239 43 1 0.5846 0.2884 2.4714 44 1 2.4210 -1.5670 3.6096 45 1 2.7200 -2.6755 6.7415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271716556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:40 Heat of formation + Delta-G solvation = -63.366883 kcal Electronic energy + Delta-G solvation = -31183.439820 eV Core-core repulsion = 26838.120635 eV Total energy + Delta-G solvation = -4345.319184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.01827 -49.97877 -41.82965 -39.65799 -38.39987 -36.42606 -34.96395 -33.69827 -32.49115 -31.95621 -31.06362 -28.55153 -27.18643 -26.10797 -24.96721 -23.99031 -23.75337 -22.29813 -21.48266 -20.63435 -19.24726 -18.62210 -18.39465 -18.21244 -17.38273 -17.11644 -16.74669 -16.57587 -16.40740 -16.04800 -15.60835 -15.53343 -15.47817 -15.38145 -15.06770 -14.82194 -14.58445 -14.20782 -14.09239 -13.81646 -13.76622 -13.57218 -13.38919 -13.02265 -12.97344 -12.84218 -12.77338 -12.49653 -12.37508 -12.15802 -11.95101 -11.85557 -11.63536 -11.55255 -11.13311 -10.90237 -10.36432 -9.96000 -9.69376 -9.50361 -8.65497 -7.86345 -5.05238 -0.39877 -0.13946 1.40553 1.45608 1.50893 1.77918 1.97815 2.36313 2.59598 3.05061 3.07315 3.37117 3.47254 3.55398 3.73496 3.78487 3.85386 3.92369 4.00376 4.09907 4.25938 4.31437 4.39612 4.49585 4.53522 4.59598 4.76628 4.78680 4.81394 4.82817 4.84994 4.87284 4.93662 4.96431 5.02298 5.10442 5.22430 5.27333 5.29915 5.40857 5.49269 5.53303 5.63034 5.78786 6.34811 6.50729 7.37020 7.42224 8.19851 8.43122 9.38081 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008336 B = 0.005597 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3358.161780 B = 5001.736326 C = 7166.117736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.062 0.938 4 C -0.107 4.107 5 C -0.128 4.128 6 C 0.091 3.909 7 N -0.605 5.605 8 C 0.511 3.489 9 O -0.490 6.490 10 C -0.142 4.142 11 C -0.100 4.100 12 C 0.084 3.916 13 F -0.131 7.131 14 C -0.091 4.091 15 C -0.119 4.119 16 C 0.107 3.893 17 F -0.141 7.141 18 C 0.154 3.846 19 H 0.065 0.935 20 C 0.162 3.838 21 N -0.703 5.703 22 C -0.212 4.212 23 H 0.060 0.940 24 C -0.083 4.083 25 N -0.972 5.972 26 Si 0.966 3.034 27 H -0.276 1.276 28 H -0.293 1.293 29 H -0.290 1.290 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.157 0.843 40 H 0.189 0.811 41 H 0.181 0.819 42 H 0.016 0.984 43 H 0.021 0.979 44 H 0.366 0.634 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.784 0.898 -20.794 23.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.080 0.920 4 C -0.145 4.145 5 C -0.166 4.166 6 C -0.030 4.030 7 N -0.341 5.341 8 C 0.297 3.703 9 O -0.362 6.362 10 C -0.147 4.147 11 C -0.120 4.120 12 C 0.065 3.935 13 F -0.109 7.109 14 C -0.109 4.109 15 C -0.137 4.137 16 C 0.087 3.913 17 F -0.120 7.120 18 C 0.051 3.949 19 H 0.083 0.917 20 C 0.036 3.964 21 N -0.343 5.343 22 C -0.345 4.345 23 H 0.078 0.922 24 C -0.274 4.274 25 N -0.625 5.625 26 Si 0.796 3.204 27 H -0.202 1.202 28 H -0.219 1.219 29 H -0.217 1.217 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.174 0.826 40 H 0.207 0.793 41 H 0.198 0.802 42 H 0.034 0.966 43 H 0.039 0.961 44 H 0.198 0.802 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.403 1.359 -20.158 22.725 hybrid contribution -0.286 0.040 1.591 1.617 sum 10.117 1.400 -18.567 21.191 Atomic orbital electron populations 1.21818 0.93542 1.02480 1.02221 1.21432 0.96719 0.99218 0.93787 0.91986 1.21569 0.95209 1.01133 0.96542 1.21920 0.96089 1.00994 0.97575 1.22320 0.99225 0.97829 0.83653 1.47843 1.05869 1.61949 1.18419 1.18501 0.86342 0.82336 0.83129 1.91220 1.72486 1.38509 1.33968 1.20024 0.93866 0.95848 1.04946 1.21305 0.95099 0.96447 0.99105 1.17527 0.91312 0.83335 1.01345 1.91539 1.87869 1.44789 1.86715 1.21493 1.02431 0.90609 0.96371 1.21277 0.91643 0.99875 1.00937 1.18172 0.93148 0.81591 0.98415 1.91525 1.89214 1.44697 1.86553 1.21446 0.79133 0.98900 0.95428 0.91704 1.20986 0.95466 0.94608 0.85374 1.42299 1.68425 1.22099 1.01493 1.19425 1.27420 1.01771 0.85905 0.92203 1.25366 1.03224 0.98008 1.00839 1.69804 1.49286 1.15182 1.28239 0.85297 0.78011 0.76665 0.80387 1.20212 1.21932 1.21677 0.92097 0.93789 0.90212 0.90940 0.89481 0.87640 0.92337 0.90093 0.88643 0.82564 0.79338 0.80186 0.96620 0.96108 0.80246 0.94632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.98 71.98 0.65 -2.63 16 2 C -0.09 -2.31 2.34 -10.71 -0.03 -2.33 16 3 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.11 -1.87 5.17 30.62 0.16 -1.72 16 5 C -0.13 -2.13 6.08 30.67 0.19 -1.94 16 6 C 0.09 1.98 4.86 86.36 0.42 2.40 16 7 N -0.61 -19.88 2.97 -798.57 -2.37 -22.25 16 8 C 0.51 20.91 6.56 86.74 0.57 21.48 16 9 O -0.49 -25.84 10.05 -3.94 -0.04 -25.88 16 10 C -0.14 -4.77 5.15 -20.06 -0.10 -4.87 16 11 C -0.10 -2.62 7.35 22.57 0.17 -2.46 16 12 C 0.08 1.79 7.29 22.33 0.16 1.96 16 13 F -0.13 -2.69 17.26 44.97 0.78 -1.91 16 14 C -0.09 -1.53 10.01 22.36 0.22 -1.31 16 15 C -0.12 -2.47 10.01 22.28 0.22 -2.25 16 16 C 0.11 3.39 7.24 22.67 0.16 3.55 16 17 F -0.14 -5.43 16.24 44.97 0.73 -4.70 16 18 C 0.15 5.31 2.39 44.98 0.11 5.42 16 19 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 20 C 0.16 7.45 4.79 86.38 0.41 7.86 16 21 N -0.70 -39.87 3.23 -343.45 -1.11 -40.98 16 22 C -0.21 -13.30 9.72 84.03 0.82 -12.48 16 23 H 0.06 3.70 7.83 -2.91 -0.02 3.68 16 24 C -0.08 -5.28 5.50 84.86 0.47 -4.81 16 25 N -0.97 -64.39 13.06 21.65 0.28 -64.11 16 26 Si 0.97 51.00 29.55 68.60 2.03 53.03 16 27 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 28 H -0.29 -15.31 7.11 99.48 0.71 -14.60 16 29 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 1.19 6.44 -2.39 -0.02 1.18 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.08 1.54 8.10 -2.39 -0.02 1.52 16 38 H 0.10 1.91 4.72 -2.38 -0.01 1.90 16 39 H 0.16 3.77 6.52 -2.91 -0.02 3.75 16 40 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.02 0.82 6.32 -2.39 -0.02 0.81 16 43 H 0.02 0.96 6.26 -2.39 -0.01 0.94 16 44 H 0.37 22.11 7.04 -92.71 -0.65 21.45 16 45 H 0.24 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -82.78 359.92 5.27 -77.51 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.38 Total: 23.43 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 4.60 Total: 5.86 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -3.20 Total: -127.34 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.04 Total: -25.88 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 1.51 Total: -6.61 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.03 Total: 53.03 kcal Total: -82.78 5.27 -77.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271716556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.140 kcal (2) G-P(sol) polarization free energy of solvation -82.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds