Wall clock time and date at job start Tue Mar 31 2020 21:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.52265 * 2 1 4 4 C 1.53039 * 109.49782 * 239.91758 * 2 1 3 5 5 C 1.53036 * 109.53564 * 301.41425 * 4 2 1 6 6 C 1.53186 * 109.31252 * 298.63191 * 5 4 2 7 7 N 1.46921 * 108.77670 * 54.64041 * 6 5 4 8 8 C 1.34775 * 120.63385 * 126.40991 * 7 6 5 9 9 O 1.21578 * 119.99911 * 185.87956 * 8 7 6 10 10 C 1.47695 * 119.99895 * 5.88565 * 8 7 6 11 11 C 1.39653 * 120.15510 * 39.54044 * 10 8 7 12 12 C 1.38076 * 119.84756 * 179.76891 * 11 10 8 13 13 F 1.35101 * 119.91710 * 180.22839 * 12 11 10 14 14 C 1.38653 * 120.16533 * 0.48569 * 12 11 10 15 15 C 1.38184 * 120.31569 * 359.78703 * 14 12 11 16 16 C 1.38311 * 120.14844 * 359.95728 * 15 14 12 17 17 F 1.35092 * 120.08668 * 180.02562 * 16 15 14 18 18 C 1.46931 * 118.73579 * 306.38635 * 7 6 5 19 19 H 1.08994 * 109.58712 * 293.68226 * 18 7 6 20 20 C 1.53000 * 109.58516 * 173.39452 * 18 7 6 21 21 N 1.46500 * 109.46882 * 69.70159 * 20 18 7 22 22 C 1.36938 * 119.99641 * 175.29188 * 21 20 18 23 23 H 1.08000 * 120.00509 * 0.02562 * 22 21 20 24 24 C 1.38810 * 119.99581 * 180.27562 * 22 21 20 25 25 N 1.31614 * 120.00480 * 359.72640 * 24 22 21 26 26 Si 1.86808 * 119.99882 * 179.72708 * 24 22 21 27 27 H 1.48489 * 109.47240 * 59.99892 * 26 24 22 28 28 H 1.48506 * 109.46840 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46829 * 299.99743 * 26 24 22 30 30 H 1.09006 * 109.47058 * 299.91924 * 1 2 3 31 31 H 1.08998 * 109.47333 * 59.91996 * 1 2 3 32 32 H 1.08995 * 109.47516 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.45912 * 181.39338 * 4 2 1 34 34 H 1.08998 * 109.45658 * 61.43170 * 4 2 1 35 35 H 1.09001 * 109.49737 * 178.68279 * 5 4 2 36 36 H 1.09002 * 109.52709 * 58.60453 * 5 4 2 37 37 H 1.08996 * 109.58814 * 294.84707 * 6 5 4 38 38 H 1.09004 * 109.70468 * 174.49688 * 6 5 4 39 39 H 1.08000 * 120.07626 * 0.02562 * 11 10 8 40 40 H 1.08001 * 119.83710 * 179.76492 * 14 12 11 41 41 H 1.08005 * 119.92277 * 179.97438 * 15 14 12 42 42 H 1.08996 * 109.47396 * 309.70025 * 20 18 7 43 43 H 1.09001 * 109.47129 * 189.69710 * 20 18 7 44 44 H 0.96996 * 120.00678 * 355.29338 * 21 20 18 45 45 H 0.97003 * 120.00416 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 1.5030 -2.1557 -1.2659 6 6 2.0140 -2.9039 -0.0307 7 7 1.6515 -2.1381 1.1696 8 6 0.9747 -2.7220 2.1783 9 8 0.5874 -2.0539 3.1173 10 6 0.7038 -4.1734 2.1431 11 6 1.6785 -5.0579 1.6762 12 6 1.4202 -6.4140 1.6505 13 9 2.3638 -7.2713 1.2035 14 6 0.1928 -6.8977 2.0773 15 6 -0.7786 -6.0282 2.5352 16 6 -0.5318 -4.6677 2.5716 17 9 -1.4822 -3.8188 3.0200 18 6 2.0414 -0.7237 1.2496 19 1 3.1274 -0.6464 1.3005 20 6 1.4229 -0.0911 2.4979 21 7 2.0706 -0.6362 3.6935 22 6 1.7480 -0.1458 4.9307 23 1 1.0158 0.6425 5.0251 24 6 2.3659 -0.6583 6.0631 25 7 3.2578 -1.6193 5.9483 26 14 1.9314 0.0159 7.7502 27 1 0.4835 -0.1895 8.0076 28 1 2.7244 -0.6937 8.7861 29 1 2.2416 1.4674 7.7981 30 1 -0.3633 0.5126 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1304 -0.7444 -1.2352 34 1 1.6987 -0.1959 -2.1388 35 1 1.8480 -2.6629 -2.1670 36 1 0.4132 -2.1360 -1.2543 37 1 3.0979 -3.0042 -0.0867 38 1 1.5575 -3.8927 0.0151 39 1 2.6336 -4.6824 1.3400 40 1 -0.0049 -7.9592 2.0513 41 1 -1.7326 -6.4118 2.8658 42 1 0.3566 -0.3148 2.5283 43 1 1.5668 0.9889 2.4671 44 1 2.7279 -1.3444 3.6089 45 1 3.6893 -1.9777 6.7397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271716557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:44 Heat of formation + Delta-G solvation = -38.092597 kcal Electronic energy + Delta-G solvation = -31442.036019 eV Core-core repulsion = 27097.812810 eV Total energy + Delta-G solvation = -4344.223209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.99817 -48.73458 -40.61315 -38.60842 -37.12122 -34.61762 -33.44074 -32.11572 -31.24301 -30.20117 -29.90215 -27.08378 -26.15903 -24.58165 -23.65108 -23.09992 -22.49878 -21.18099 -20.19607 -18.66445 -17.63396 -17.46285 -17.09101 -16.72365 -16.14152 -15.88539 -15.49234 -15.30315 -15.03438 -14.84297 -14.42243 -14.36268 -14.10407 -13.90901 -13.77477 -13.41800 -13.22032 -12.98898 -12.85311 -12.52657 -12.49397 -12.32016 -12.03485 -11.91391 -11.53854 -11.42757 -11.23372 -10.99009 -10.85717 -10.68090 -10.62523 -10.33415 -10.20793 -9.86986 -9.51724 -9.24660 -8.76557 -8.62303 -8.35349 -8.08747 -6.53644 -5.57056 -2.74881 0.68396 0.90447 2.98162 3.26349 3.54475 3.59198 3.61008 3.62301 4.09173 4.16527 4.46156 4.60429 4.72955 4.75933 4.79591 4.89580 4.94985 5.02618 5.11318 5.30337 5.41682 5.48079 5.56697 5.72639 5.75335 5.77462 5.79611 5.81420 5.83590 5.86588 5.93600 5.95804 5.97741 6.02294 6.14378 6.20703 6.31500 6.50616 6.54989 6.63526 6.69610 6.93117 7.29408 7.85943 7.87026 8.61088 8.82387 9.72205 10.31342 10.65355 11.66531 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008786 B = 0.005532 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.084032 B = 5060.449693 C = 6891.691780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.080 0.920 4 C -0.112 4.112 5 C -0.136 4.136 6 C 0.100 3.900 7 N -0.606 5.606 8 C 0.512 3.488 9 O -0.420 6.420 10 C -0.115 4.115 11 C -0.102 4.102 12 C 0.080 3.920 13 F -0.136 7.136 14 C -0.116 4.116 15 C -0.133 4.133 16 C 0.137 3.863 17 F -0.117 7.117 18 C 0.149 3.851 19 H 0.070 0.930 20 C 0.156 3.844 21 N -0.694 5.694 22 C -0.207 4.207 23 H 0.066 0.934 24 C -0.021 4.021 25 N -0.936 5.936 26 Si 0.903 3.097 27 H -0.289 1.289 28 H -0.293 1.293 29 H -0.289 1.289 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.049 0.951 43 H 0.015 0.985 44 H 0.379 0.621 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.050 -8.326 -18.127 20.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.098 0.902 4 C -0.150 4.150 5 C -0.174 4.174 6 C -0.023 4.023 7 N -0.344 5.344 8 C 0.296 3.704 9 O -0.287 6.287 10 C -0.119 4.119 11 C -0.121 4.121 12 C 0.060 3.940 13 F -0.115 7.115 14 C -0.135 4.135 15 C -0.152 4.152 16 C 0.116 3.884 17 F -0.095 7.095 18 C 0.046 3.954 19 H 0.088 0.912 20 C 0.029 3.971 21 N -0.337 5.337 22 C -0.339 4.339 23 H 0.084 0.916 24 C -0.216 4.216 25 N -0.587 5.587 26 Si 0.735 3.265 27 H -0.216 1.216 28 H -0.220 1.220 29 H -0.216 1.216 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.168 0.832 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.067 0.933 43 H 0.033 0.967 44 H 0.212 0.788 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.356 -7.807 -17.398 19.808 hybrid contribution 0.174 -0.148 0.951 0.978 sum -5.182 -7.955 -16.447 18.991 Atomic orbital electron populations 1.21851 0.94860 1.02013 1.01417 1.21465 0.96728 0.99392 0.94364 0.90215 1.21529 1.00444 0.95410 0.97616 1.21961 1.01678 0.96330 0.97447 1.21958 0.99948 0.95598 0.84826 1.47607 1.58167 1.10988 1.17648 1.17831 0.83130 0.85773 0.83676 1.91242 1.44801 1.61080 1.31553 1.20177 0.93536 0.96100 1.02112 1.21316 1.00426 0.90965 0.99408 1.17487 0.87420 0.87201 1.01872 1.91515 1.63466 1.69512 1.86978 1.21015 0.91754 1.01066 0.99675 1.20923 1.01217 0.90718 1.02360 1.17649 0.86018 0.87551 0.97190 1.91589 1.61818 1.70160 1.85922 1.21526 0.98732 0.79288 0.95867 0.91213 1.21037 0.97599 0.93883 0.84595 1.42300 1.47002 1.43406 1.00969 1.19123 1.16970 1.13564 0.84209 0.91641 1.24623 1.00116 0.99421 0.97413 1.69639 1.30996 1.30011 1.28012 0.86307 0.77536 0.77923 0.84741 1.21561 1.21958 1.21599 0.91948 0.93416 0.92516 0.91878 0.91979 0.91251 0.91189 0.91712 0.89629 0.83164 0.83717 0.83422 0.93324 0.96713 0.78775 0.93924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.22 37.16 0.31 -1.56 16 2 C -0.10 -1.27 2.80 -90.50 -0.25 -1.52 16 3 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 4 C -0.11 -1.14 5.43 -26.69 -0.14 -1.28 16 5 C -0.14 -1.32 5.74 -26.62 -0.15 -1.47 16 6 C 0.10 1.15 4.87 -3.72 -0.02 1.13 16 7 N -0.61 -9.52 2.41 -166.38 -0.40 -9.92 16 8 C 0.51 9.76 6.59 -12.40 -0.08 9.68 16 9 O -0.42 -10.13 10.07 5.30 0.05 -10.08 16 10 C -0.11 -1.86 5.15 -104.92 -0.54 -2.40 16 11 C -0.10 -1.38 7.35 -39.11 -0.29 -1.66 16 12 C 0.08 0.96 7.29 -39.49 -0.29 0.68 16 13 F -0.14 -1.64 17.26 2.25 0.04 -1.60 16 14 C -0.12 -1.21 10.01 -39.45 -0.40 -1.61 16 15 C -0.13 -1.55 10.01 -39.57 -0.40 -1.94 16 16 C 0.14 2.12 7.24 -38.97 -0.28 1.84 16 17 F -0.12 -2.10 16.24 2.25 0.04 -2.07 16 18 C 0.15 2.46 2.63 -67.60 -0.18 2.28 16 19 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 20 C 0.16 3.33 4.04 -4.04 -0.02 3.31 16 21 N -0.69 -18.46 3.24 -59.91 -0.19 -18.65 16 22 C -0.21 -6.13 9.71 -15.06 -0.15 -6.28 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.02 -0.64 5.50 -17.43 -0.10 -0.73 16 25 N -0.94 -29.70 13.06 55.49 0.72 -28.97 16 26 Si 0.90 23.87 29.55 -169.99 -5.02 18.84 16 27 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 28 H -0.29 -7.78 7.11 56.52 0.40 -7.37 16 29 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 30 H 0.06 0.91 6.57 -51.93 -0.34 0.57 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.78 5.97 -51.93 -0.31 0.47 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.72 6.34 -51.93 -0.33 0.40 16 37 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.09 0.92 4.70 -51.93 -0.24 0.68 16 39 H 0.15 1.88 6.51 -52.49 -0.34 1.54 16 40 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 42 H 0.05 1.12 5.05 -51.93 -0.26 0.86 16 43 H 0.02 0.32 8.13 -51.93 -0.42 -0.10 16 44 H 0.38 10.70 7.10 -40.82 -0.29 10.41 16 45 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -34.58 355.31 -8.27 -42.85 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.89 Total: 5.78 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.97 Total: -1.54 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.13 Total: -57.55 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.05 Total: -10.08 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.08 Total: -3.66 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.02 Total: 18.84 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.58 -8.27 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271716557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.757 kcal (2) G-P(sol) polarization free energy of solvation -34.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds