Wall clock time and date at job start Tue Mar 31 2020 21:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.52265 * 2 1 4 4 C 1.53039 * 109.49782 * 239.91758 * 2 1 3 5 5 C 1.53036 * 109.53564 * 301.41425 * 4 2 1 6 6 C 1.53186 * 109.31252 * 298.63191 * 5 4 2 7 7 N 1.46921 * 108.77670 * 54.64041 * 6 5 4 8 8 C 1.34775 * 120.63385 * 126.40991 * 7 6 5 9 9 O 1.21578 * 119.99911 * 185.87956 * 8 7 6 10 10 C 1.47695 * 119.99895 * 5.88565 * 8 7 6 11 11 C 1.39653 * 120.15510 * 39.54044 * 10 8 7 12 12 C 1.38076 * 119.84756 * 179.76891 * 11 10 8 13 13 F 1.35101 * 119.91710 * 180.22839 * 12 11 10 14 14 C 1.38653 * 120.16533 * 0.48569 * 12 11 10 15 15 C 1.38184 * 120.31569 * 359.78703 * 14 12 11 16 16 C 1.38311 * 120.14844 * 359.95728 * 15 14 12 17 17 F 1.35092 * 120.08668 * 180.02562 * 16 15 14 18 18 C 1.46931 * 118.73579 * 306.38635 * 7 6 5 19 19 H 1.08994 * 109.58712 * 293.68226 * 18 7 6 20 20 C 1.53000 * 109.58516 * 173.39452 * 18 7 6 21 21 N 1.46500 * 109.46882 * 69.70159 * 20 18 7 22 22 C 1.36938 * 119.99641 * 175.29188 * 21 20 18 23 23 H 1.08000 * 120.00509 * 0.02562 * 22 21 20 24 24 C 1.38810 * 119.99581 * 180.27562 * 22 21 20 25 25 N 1.31614 * 120.00480 * 359.72640 * 24 22 21 26 26 Si 1.86808 * 119.99882 * 179.72708 * 24 22 21 27 27 H 1.48489 * 109.47240 * 59.99892 * 26 24 22 28 28 H 1.48506 * 109.46840 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46829 * 299.99743 * 26 24 22 30 30 H 1.09006 * 109.47058 * 299.91924 * 1 2 3 31 31 H 1.08998 * 109.47333 * 59.91996 * 1 2 3 32 32 H 1.08995 * 109.47516 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.45912 * 181.39338 * 4 2 1 34 34 H 1.08998 * 109.45658 * 61.43170 * 4 2 1 35 35 H 1.09001 * 109.49737 * 178.68279 * 5 4 2 36 36 H 1.09002 * 109.52709 * 58.60453 * 5 4 2 37 37 H 1.08996 * 109.58814 * 294.84707 * 6 5 4 38 38 H 1.09004 * 109.70468 * 174.49688 * 6 5 4 39 39 H 1.08000 * 120.07626 * 0.02562 * 11 10 8 40 40 H 1.08001 * 119.83710 * 179.76492 * 14 12 11 41 41 H 1.08005 * 119.92277 * 179.97438 * 15 14 12 42 42 H 1.08996 * 109.47396 * 309.70025 * 20 18 7 43 43 H 1.09001 * 109.47129 * 189.69710 * 20 18 7 44 44 H 0.96996 * 120.00678 * 355.29338 * 21 20 18 45 45 H 0.97003 * 120.00416 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 1.5030 -2.1557 -1.2659 6 6 2.0140 -2.9039 -0.0307 7 7 1.6515 -2.1381 1.1696 8 6 0.9747 -2.7220 2.1783 9 8 0.5874 -2.0539 3.1173 10 6 0.7038 -4.1734 2.1431 11 6 1.6785 -5.0579 1.6762 12 6 1.4202 -6.4140 1.6505 13 9 2.3638 -7.2713 1.2035 14 6 0.1928 -6.8977 2.0773 15 6 -0.7786 -6.0282 2.5352 16 6 -0.5318 -4.6677 2.5716 17 9 -1.4822 -3.8188 3.0200 18 6 2.0414 -0.7237 1.2496 19 1 3.1274 -0.6464 1.3005 20 6 1.4229 -0.0911 2.4979 21 7 2.0706 -0.6362 3.6935 22 6 1.7480 -0.1458 4.9307 23 1 1.0158 0.6425 5.0251 24 6 2.3659 -0.6583 6.0631 25 7 3.2578 -1.6193 5.9483 26 14 1.9314 0.0159 7.7502 27 1 0.4835 -0.1895 8.0076 28 1 2.7244 -0.6937 8.7861 29 1 2.2416 1.4674 7.7981 30 1 -0.3633 0.5126 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1304 -0.7444 -1.2352 34 1 1.6987 -0.1959 -2.1388 35 1 1.8480 -2.6629 -2.1670 36 1 0.4132 -2.1360 -1.2543 37 1 3.0979 -3.0042 -0.0867 38 1 1.5575 -3.8927 0.0151 39 1 2.6336 -4.6824 1.3400 40 1 -0.0049 -7.9592 2.0513 41 1 -1.7326 -6.4118 2.8658 42 1 0.3566 -0.3148 2.5283 43 1 1.5668 0.9889 2.4671 44 1 2.7279 -1.3444 3.6089 45 1 3.6893 -1.9777 6.7397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271716557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:43 Heat of formation + Delta-G solvation = -59.375953 kcal Electronic energy + Delta-G solvation = -31442.958934 eV Core-core repulsion = 27097.812810 eV Total energy + Delta-G solvation = -4345.146125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.01006 -49.97538 -41.91265 -39.69248 -38.43062 -36.38660 -34.80031 -33.71051 -32.31064 -31.86470 -31.05657 -28.51038 -27.33017 -26.13968 -24.94360 -24.25422 -23.97464 -22.52891 -21.39539 -19.86631 -19.22045 -18.60986 -18.31357 -18.20046 -17.36501 -17.01362 -16.79291 -16.72507 -16.40841 -16.01286 -15.86395 -15.44660 -15.42417 -15.25021 -15.02378 -14.91085 -14.71822 -14.24049 -14.08720 -13.91381 -13.77934 -13.59659 -13.32723 -13.02084 -12.95267 -12.81475 -12.62587 -12.45827 -12.35646 -12.14875 -12.02364 -11.83561 -11.63237 -11.29752 -11.22933 -10.89367 -10.34425 -9.92783 -9.68357 -9.46145 -8.65177 -7.85926 -5.04761 -0.38972 -0.13427 1.40663 1.45647 1.50903 1.79929 2.00433 2.37470 2.59956 3.05880 3.08033 3.38110 3.47767 3.56079 3.75819 3.80352 3.87996 3.92559 3.99877 4.12476 4.24543 4.36446 4.41960 4.50665 4.52800 4.60807 4.77169 4.80363 4.80743 4.83371 4.87976 4.90115 4.93280 4.95238 5.00976 5.11468 5.24528 5.27927 5.30464 5.38554 5.50568 5.55989 5.63680 5.82212 6.35439 6.53604 7.39127 7.43783 8.21040 8.43883 9.38519 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008786 B = 0.005532 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.084032 B = 5060.449693 C = 6891.691780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.087 0.913 4 C -0.106 4.106 5 C -0.130 4.130 6 C 0.091 3.909 7 N -0.599 5.599 8 C 0.514 3.486 9 O -0.489 6.489 10 C -0.143 4.143 11 C -0.100 4.100 12 C 0.084 3.916 13 F -0.131 7.131 14 C -0.091 4.091 15 C -0.119 4.119 16 C 0.107 3.893 17 F -0.141 7.141 18 C 0.152 3.848 19 H 0.064 0.936 20 C 0.162 3.838 21 N -0.704 5.704 22 C -0.211 4.211 23 H 0.060 0.940 24 C -0.084 4.084 25 N -0.973 5.973 26 Si 0.966 3.034 27 H -0.290 1.290 28 H -0.293 1.293 29 H -0.277 1.277 30 H 0.033 0.967 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.157 0.843 40 H 0.189 0.811 41 H 0.180 0.820 42 H 0.030 0.970 43 H 0.010 0.990 44 H 0.366 0.634 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.194 -10.368 -20.835 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.105 0.895 4 C -0.144 4.144 5 C -0.168 4.168 6 C -0.030 4.030 7 N -0.335 5.335 8 C 0.299 3.701 9 O -0.362 6.362 10 C -0.147 4.147 11 C -0.120 4.120 12 C 0.064 3.936 13 F -0.110 7.110 14 C -0.110 4.110 15 C -0.138 4.138 16 C 0.087 3.913 17 F -0.119 7.119 18 C 0.049 3.951 19 H 0.082 0.918 20 C 0.036 3.964 21 N -0.345 5.345 22 C -0.344 4.344 23 H 0.078 0.922 24 C -0.275 4.275 25 N -0.626 5.626 26 Si 0.796 3.204 27 H -0.217 1.217 28 H -0.220 1.220 29 H -0.203 1.203 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.174 0.826 40 H 0.206 0.794 41 H 0.198 0.802 42 H 0.048 0.952 43 H 0.027 0.973 44 H 0.197 0.803 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.507 -9.851 -20.202 23.141 hybrid contribution 0.141 0.316 1.606 1.643 sum -5.365 -9.535 -18.597 21.576 Atomic orbital electron populations 1.21787 0.95082 1.01312 1.01361 1.21459 0.96408 0.99720 0.93754 0.89461 1.21523 1.00937 0.95382 0.96548 1.21955 1.01293 0.96114 0.97424 1.22315 1.01073 0.95879 0.83745 1.47756 1.56610 1.10898 1.18271 1.18451 0.81434 0.87024 0.83143 1.91214 1.48279 1.62740 1.33947 1.20045 0.95029 0.94791 1.04825 1.21313 0.99965 0.91590 0.99105 1.17540 0.88079 0.86536 1.01423 1.91539 1.63461 1.69102 1.86854 1.21485 0.90084 1.02914 0.96478 1.21272 1.02817 0.88727 1.00966 1.18161 0.85736 0.88999 0.98400 1.91525 1.62627 1.71282 1.86513 1.21422 0.98009 0.80205 0.95480 0.91770 1.21004 0.96573 0.93573 0.85279 1.42306 1.47310 1.43365 1.01513 1.19414 1.16057 1.12973 0.85942 0.92248 1.25355 1.00872 1.00422 1.00811 1.69801 1.32663 1.31845 1.28248 0.85305 0.76866 0.77785 0.80452 1.21666 1.21957 1.20281 0.94745 0.90635 0.93552 0.91019 0.89521 0.87939 0.91800 0.90196 0.88723 0.82563 0.79408 0.80232 0.95246 0.97261 0.80253 0.94655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.22 71.98 0.59 -2.95 16 2 C -0.09 -2.30 2.80 -10.72 -0.03 -2.33 16 3 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.11 -1.81 5.43 30.62 0.17 -1.64 16 5 C -0.13 -2.11 5.74 30.67 0.18 -1.93 16 6 C 0.09 1.94 4.87 86.36 0.42 2.36 16 7 N -0.60 -19.17 2.41 -798.59 -1.92 -21.09 16 8 C 0.51 20.59 6.59 86.74 0.57 21.16 16 9 O -0.49 -25.40 10.07 -3.96 -0.04 -25.44 16 10 C -0.14 -4.70 5.15 -20.06 -0.10 -4.81 16 11 C -0.10 -2.60 7.35 22.57 0.17 -2.44 16 12 C 0.08 1.77 7.29 22.33 0.16 1.94 16 13 F -0.13 -2.70 17.26 44.97 0.78 -1.92 16 14 C -0.09 -1.54 10.01 22.36 0.22 -1.31 16 15 C -0.12 -2.46 10.01 22.27 0.22 -2.24 16 16 C 0.11 3.36 7.24 22.67 0.16 3.52 16 17 F -0.14 -5.35 16.24 44.97 0.73 -4.62 16 18 C 0.15 5.16 2.63 44.97 0.12 5.28 16 19 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 20 C 0.16 7.37 4.04 86.38 0.35 7.72 16 21 N -0.70 -39.79 3.24 -343.46 -1.11 -40.90 16 22 C -0.21 -13.19 9.71 84.03 0.82 -12.38 16 23 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 24 C -0.08 -5.29 5.50 84.86 0.47 -4.83 16 25 N -0.97 -64.37 13.06 21.65 0.28 -64.08 16 26 Si 0.97 51.01 29.55 68.60 2.03 53.04 16 27 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 28 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 29 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 30 H 0.03 1.05 6.57 -2.38 -0.02 1.04 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.27 5.97 -2.39 -0.01 1.26 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.16 6.34 -2.39 -0.02 1.14 16 37 H 0.08 1.50 8.10 -2.39 -0.02 1.48 16 38 H 0.09 1.87 4.70 -2.38 -0.01 1.85 16 39 H 0.16 3.74 6.51 -2.91 -0.02 3.72 16 40 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.03 1.48 5.05 -2.39 -0.01 1.47 16 43 H 0.01 0.44 8.13 -2.39 -0.02 0.42 16 44 H 0.37 22.00 7.10 -92.71 -0.66 21.34 16 45 H 0.24 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -82.23 355.31 5.60 -76.63 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.38 Total: 23.26 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 4.48 Total: 5.14 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -2.76 Total: -126.08 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.04 Total: -25.44 kcal Atomic # 9 Polarization: -8.05 SS G_CDS: 1.51 Total: -6.54 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.03 Total: 53.04 kcal Total: -82.23 5.60 -76.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271716557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.254 kcal (2) G-P(sol) polarization free energy of solvation -82.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds