Wall clock time and date at job start Tue Mar 31 2020 21:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.52434 * 2 1 4 4 C 1.53042 * 109.49859 * 120.08208 * 2 1 3 5 5 C 1.53037 * 109.53611 * 58.58795 * 4 2 1 6 6 C 1.53194 * 109.31181 * 61.36634 * 5 4 2 7 7 N 1.46930 * 108.77547 * 305.36061 * 6 5 4 8 8 C 1.34769 * 120.62833 * 233.63146 * 7 6 5 9 9 O 1.21581 * 119.99438 * 184.21725 * 8 7 6 10 10 C 1.47693 * 120.00461 * 4.21842 * 8 7 6 11 11 C 1.39659 * 120.15326 * 309.30514 * 10 8 7 12 12 C 1.38066 * 119.84804 * 179.76751 * 11 10 8 13 13 F 1.35105 * 119.91679 * 180.23569 * 12 11 10 14 14 C 1.38653 * 120.17035 * 0.49175 * 12 11 10 15 15 C 1.38187 * 120.31231 * 359.78775 * 14 12 11 16 16 C 1.38310 * 120.14523 * 359.95460 * 15 14 12 17 17 F 1.35103 * 120.08385 * 180.02562 * 16 15 14 18 18 C 1.46923 * 118.73260 * 53.61389 * 7 6 5 19 19 H 1.08996 * 109.59359 * 66.32185 * 18 7 6 20 20 C 1.53004 * 109.58210 * 186.60138 * 18 7 6 21 21 N 1.46503 * 109.47113 * 283.59731 * 20 18 7 22 22 C 1.36938 * 120.00161 * 185.38450 * 21 20 18 23 23 H 1.08004 * 119.99889 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00190 * 180.02562 * 22 21 20 25 25 N 1.31614 * 119.99880 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00013 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47046 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47105 * 119.99777 * 26 24 22 29 29 H 1.48496 * 109.47025 * 239.99776 * 26 24 22 30 30 H 1.08999 * 109.46912 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47527 * 300.08182 * 1 2 3 32 32 H 1.09000 * 109.47049 * 60.07959 * 1 2 3 33 33 H 1.08999 * 109.45504 * 298.56694 * 4 2 1 34 34 H 1.09002 * 109.44473 * 178.59942 * 4 2 1 35 35 H 1.09005 * 109.49920 * 301.41304 * 5 4 2 36 36 H 1.08999 * 109.49714 * 181.31824 * 5 4 2 37 37 H 1.09001 * 109.58295 * 185.57856 * 6 5 4 38 38 H 1.08996 * 109.59113 * 65.15584 * 6 5 4 39 39 H 1.07997 * 120.07486 * 0.02562 * 11 10 8 40 40 H 1.07998 * 119.84429 * 179.76119 * 14 12 11 41 41 H 1.07998 * 119.92427 * 179.97438 * 15 14 12 42 42 H 1.08997 * 109.47373 * 163.59834 * 20 18 7 43 43 H 1.09001 * 109.47280 * 43.59848 * 20 18 7 44 44 H 0.96995 * 119.99784 * 5.39132 * 21 20 18 45 45 H 0.97003 * 120.00537 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 1.5030 -2.1558 1.2659 6 6 2.0141 -2.9039 0.0306 7 7 1.6515 -2.1381 -1.1697 8 6 0.9741 -2.7217 -2.1780 9 8 0.7469 -2.0999 -3.1977 10 6 0.5076 -4.1167 -2.0442 11 6 1.3953 -5.1180 -1.6445 12 6 0.9513 -6.4191 -1.5168 13 9 1.8078 -7.3880 -1.1256 14 6 -0.3700 -6.7348 -1.7942 15 6 -1.2528 -5.7505 -2.1958 16 6 -0.8232 -4.4420 -2.3228 17 9 -1.6876 -3.4805 -2.7150 18 6 2.0413 -0.7237 -1.2496 19 1 3.1273 -0.6462 -1.3006 20 6 1.4229 -0.0911 -2.4979 21 7 2.1744 -0.5129 -3.6826 22 6 1.8726 0.0159 -4.9091 23 1 1.0807 0.7444 -5.0031 24 6 2.5843 -0.3841 -6.0317 25 7 3.5496 -1.2714 -5.9172 26 14 2.1730 0.3378 -7.7047 27 1 1.0575 1.3080 -7.5645 28 1 3.3665 1.0323 -8.2512 29 1 1.7685 -0.7523 -8.6283 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5151 0.8892 32 1 -0.3633 0.5126 -0.8907 33 1 1.6987 -0.1958 2.1389 34 1 3.1305 -0.7444 1.2350 35 1 0.4132 -2.1355 1.2540 36 1 1.8481 -2.6629 2.1670 37 1 1.5554 -3.8918 -0.0139 38 1 3.0980 -3.0043 0.0866 39 1 2.4257 -4.8744 -1.4317 40 1 -0.7107 -7.7550 -1.6963 41 1 -2.2805 -6.0036 -2.4106 42 1 1.4604 0.9948 -2.4115 43 1 0.3856 -0.4124 -2.5922 44 1 2.8858 -1.1669 -3.5982 45 1 4.0473 -1.5508 -6.7015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271716558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:46 Heat of formation + Delta-G solvation = -64.255434 kcal Electronic energy + Delta-G solvation = -31320.158054 eV Core-core repulsion = 26974.800339 eV Total energy + Delta-G solvation = -4345.357715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.04639 -49.98792 -41.91975 -39.71832 -38.46863 -36.40687 -34.78302 -33.72183 -32.36715 -31.87645 -31.08874 -28.52368 -27.31867 -26.15236 -24.94626 -24.28642 -23.99160 -22.55821 -21.40219 -19.84238 -19.23197 -18.63676 -18.37484 -18.23925 -17.42216 -17.00808 -16.86259 -16.73130 -16.42958 -16.06477 -15.83322 -15.46994 -15.41294 -15.22909 -15.02712 -14.91773 -14.81908 -14.25426 -14.04161 -13.93954 -13.82930 -13.60503 -13.34028 -13.05218 -12.95095 -12.85702 -12.63972 -12.46543 -12.35912 -12.09920 -12.04429 -11.85394 -11.65932 -11.31413 -11.24438 -10.91183 -10.41996 -9.97231 -9.68899 -9.47089 -8.70694 -7.86336 -5.05980 -0.37970 -0.15326 1.40874 1.43663 1.52985 1.72926 1.95633 2.29275 2.59548 3.03638 3.05017 3.34524 3.46866 3.56141 3.73998 3.78885 3.87807 3.90371 3.98539 4.10424 4.23450 4.35415 4.40586 4.48713 4.52296 4.60157 4.76499 4.78321 4.79505 4.82387 4.86483 4.88269 4.92525 4.94345 5.00252 5.10745 5.22135 5.26287 5.29727 5.35364 5.50581 5.54255 5.61847 5.79351 6.35450 6.48936 7.34529 7.42240 8.21906 8.44856 9.38789 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009282 B = 0.005089 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.783002 B = 5501.265924 C = 7101.759948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.086 0.914 4 C -0.107 4.107 5 C -0.130 4.130 6 C 0.090 3.910 7 N -0.596 5.596 8 C 0.518 3.482 9 O -0.497 6.497 10 C -0.140 4.140 11 C -0.102 4.102 12 C 0.087 3.913 13 F -0.131 7.131 14 C -0.091 4.091 15 C -0.115 4.115 16 C 0.106 3.894 17 F -0.142 7.142 18 C 0.152 3.848 19 H 0.062 0.938 20 C 0.164 3.836 21 N -0.707 5.707 22 C -0.209 4.209 23 H 0.060 0.940 24 C -0.086 4.086 25 N -0.974 5.974 26 Si 0.966 3.034 27 H -0.272 1.272 28 H -0.290 1.290 29 H -0.299 1.299 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.154 0.846 40 H 0.189 0.811 41 H 0.182 0.818 42 H 0.011 0.989 43 H 0.026 0.974 44 H 0.366 0.634 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 -11.164 21.563 25.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 H 0.105 0.895 4 C -0.144 4.144 5 C -0.167 4.167 6 C -0.031 4.031 7 N -0.332 5.332 8 C 0.303 3.697 9 O -0.370 6.370 10 C -0.144 4.144 11 C -0.122 4.122 12 C 0.067 3.933 13 F -0.110 7.110 14 C -0.110 4.110 15 C -0.134 4.134 16 C 0.086 3.914 17 F -0.120 7.120 18 C 0.048 3.952 19 H 0.080 0.920 20 C 0.037 3.963 21 N -0.347 5.347 22 C -0.342 4.342 23 H 0.078 0.922 24 C -0.277 4.277 25 N -0.627 5.627 26 Si 0.797 3.203 27 H -0.196 1.196 28 H -0.217 1.217 29 H -0.227 1.227 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.171 0.829 40 H 0.206 0.794 41 H 0.199 0.801 42 H 0.029 0.971 43 H 0.043 0.957 44 H 0.197 0.803 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.820 -10.669 20.904 24.738 hybrid contribution 0.307 0.342 -1.622 1.686 sum -7.513 -10.327 19.282 23.128 Atomic orbital electron populations 1.21788 0.94937 1.01398 1.01469 1.21470 0.96519 0.99678 0.93682 0.89534 1.21532 1.00898 0.95465 0.96552 1.21953 1.01360 0.96015 0.97414 1.22293 1.01114 0.95974 0.83723 1.47853 1.56034 1.10878 1.18387 1.18558 0.80594 0.86538 0.83963 1.91262 1.54321 1.62667 1.28719 1.19978 0.93946 0.95067 1.05443 1.21195 1.00781 0.90874 0.99316 1.17527 0.88893 0.84768 1.02062 1.91545 1.69697 1.61300 1.88427 1.21491 0.90101 1.02310 0.97085 1.21277 1.03236 0.88422 1.00417 1.18104 0.86329 0.87291 0.99696 1.91527 1.68710 1.63614 1.88190 1.21420 0.98065 0.80160 0.95520 0.91976 1.20971 0.95620 0.94170 0.85509 1.42272 1.39757 1.49667 1.03027 1.19505 1.11783 1.15942 0.86972 0.92200 1.25377 0.99990 1.01366 1.00925 1.69824 1.26591 1.37619 1.28685 0.85140 0.77226 0.77237 0.80709 1.19636 1.21682 1.22680 0.93393 0.90485 0.94782 0.89422 0.91151 0.91623 0.87904 0.88577 0.90257 0.82858 0.79368 0.80078 0.97120 0.95653 0.80284 0.94659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.26 71.98 0.59 -2.91 16 2 C -0.09 -2.32 2.75 -10.72 -0.03 -2.35 16 3 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.11 -1.83 5.43 30.62 0.17 -1.66 16 5 C -0.13 -2.07 5.74 30.67 0.18 -1.89 16 6 C 0.09 1.91 5.38 86.36 0.46 2.37 16 7 N -0.60 -18.97 2.41 -798.57 -1.92 -20.89 16 8 C 0.52 20.36 6.72 86.74 0.58 20.94 16 9 O -0.50 -25.77 10.70 -3.97 -0.04 -25.81 16 10 C -0.14 -4.39 5.02 -20.06 -0.10 -4.49 16 11 C -0.10 -2.52 7.33 22.57 0.17 -2.36 16 12 C 0.09 1.72 7.29 22.33 0.16 1.88 16 13 F -0.13 -2.56 17.26 44.97 0.78 -1.78 16 14 C -0.09 -1.38 10.01 22.36 0.22 -1.16 16 15 C -0.12 -2.14 10.01 22.27 0.22 -1.91 16 16 C 0.11 3.08 7.26 22.67 0.16 3.24 16 17 F -0.14 -5.03 16.55 44.97 0.74 -4.29 16 18 C 0.15 5.20 2.60 44.98 0.12 5.32 16 19 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 20 C 0.16 7.51 3.85 86.38 0.33 7.84 16 21 N -0.71 -40.33 3.34 -343.44 -1.15 -41.48 16 22 C -0.21 -13.14 9.82 84.03 0.83 -12.32 16 23 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 24 C -0.09 -5.46 5.50 84.86 0.47 -4.99 16 25 N -0.97 -64.97 13.06 21.65 0.28 -64.69 16 26 Si 0.97 51.22 29.55 68.60 2.03 53.24 16 27 H -0.27 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.29 -14.94 7.11 99.48 0.71 -14.24 16 29 H -0.30 -15.91 7.11 99.48 0.71 -15.20 16 30 H 0.05 1.28 5.97 -2.39 -0.01 1.26 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.03 1.03 6.72 -2.39 -0.02 1.01 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.15 6.33 -2.38 -0.02 1.13 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 1.84 4.52 -2.39 -0.01 1.83 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.15 3.56 7.05 -2.91 -0.02 3.54 16 40 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 42 H 0.01 0.51 8.05 -2.39 -0.02 0.49 16 43 H 0.03 1.30 5.26 -2.39 -0.01 1.29 16 44 H 0.37 22.28 7.49 -92.71 -0.69 21.59 16 45 H 0.24 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -83.30 357.80 5.59 -77.70 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.34 Total: 22.43 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 4.54 Total: 5.57 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -2.79 Total: -127.06 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.04 Total: -25.81 kcal Atomic # 9 Polarization: -7.59 SS G_CDS: 1.52 Total: -6.07 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 2.03 Total: 53.24 kcal Total: -83.30 5.59 -77.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271716558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.447 kcal (2) G-P(sol) polarization free energy of solvation -83.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds