Wall clock time and date at job start Tue Mar 31 2020 21:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.49467 * 2 1 4 4 C 1.53042 * 109.49905 * 120.06490 * 2 1 3 5 5 C 1.53039 * 109.53559 * 181.34982 * 4 2 1 6 6 C 1.53193 * 109.31141 * 298.63517 * 5 4 2 7 7 N 1.46918 * 108.77735 * 54.64067 * 6 5 4 8 8 C 1.34772 * 120.63500 * 126.36487 * 7 6 5 9 9 O 1.21572 * 120.00117 * 185.77743 * 8 7 6 10 10 C 1.47694 * 119.99745 * 5.77838 * 8 7 6 11 11 C 1.39655 * 120.15405 * 37.89910 * 10 8 7 12 12 C 1.38065 * 119.85267 * 180.02562 * 11 10 8 13 13 F 1.35100 * 119.92247 * 179.97438 * 12 11 10 14 14 C 1.38654 * 120.16572 * 0.25528 * 12 11 10 15 15 C 1.38190 * 120.31458 * 359.48573 * 14 12 11 16 16 C 1.38312 * 120.14364 * 0.51225 * 15 14 12 17 17 F 1.35094 * 120.08434 * 179.72572 * 16 15 14 18 18 C 1.46933 * 118.73692 * 306.63917 * 7 6 5 19 19 H 1.09001 * 109.58626 * 293.57495 * 18 7 6 20 20 C 1.53001 * 109.58991 * 173.14636 * 18 7 6 21 21 N 1.46497 * 109.47016 * 69.68159 * 20 18 7 22 22 C 1.36933 * 119.99917 * 175.30089 * 21 20 18 23 23 H 1.08005 * 120.00351 * 0.02562 * 22 21 20 24 24 C 1.38814 * 120.00418 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99615 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00459 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46868 * 90.00149 * 26 24 22 28 28 H 1.48499 * 109.47502 * 210.00133 * 26 24 22 29 29 H 1.48494 * 109.47421 * 330.00414 * 26 24 22 30 30 H 1.08994 * 109.46764 * 299.92846 * 1 2 3 31 31 H 1.08995 * 109.47268 * 59.93149 * 1 2 3 32 32 H 1.09001 * 109.46397 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.45788 * 61.32988 * 4 2 1 34 34 H 1.09002 * 109.44538 * 301.36555 * 4 2 1 35 35 H 1.09000 * 109.49075 * 178.68526 * 5 4 2 36 36 H 1.08997 * 109.49812 * 58.58673 * 5 4 2 37 37 H 1.08996 * 109.58918 * 294.84647 * 6 5 4 38 38 H 1.09006 * 109.69971 * 174.49166 * 6 5 4 39 39 H 1.08001 * 120.07451 * 359.97438 * 11 10 8 40 40 H 1.08002 * 119.84496 * 179.74227 * 14 12 11 41 41 H 1.07998 * 119.93050 * 180.25906 * 15 14 12 42 42 H 1.08996 * 109.47474 * 189.68503 * 20 18 7 43 43 H 1.09000 * 109.46758 * 309.68437 * 20 18 7 44 44 H 0.96996 * 120.00131 * 355.30154 * 21 20 18 45 45 H 0.96999 * 119.99767 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0276 0.0000 4 6 2.0409 -0.7227 1.2485 5 6 3.5709 -0.6939 1.2665 6 6 4.1060 -1.4254 0.0315 7 7 3.5054 -0.8282 -1.1690 8 6 4.2819 -0.3843 -2.1772 9 8 3.7814 0.2021 -3.1171 10 6 5.7410 -0.6103 -2.1400 11 6 6.2526 -1.8096 -1.6396 12 6 7.6176 -2.0141 -1.6072 13 9 8.1141 -3.1735 -1.1230 14 6 8.4806 -1.0302 -2.0651 15 6 7.9817 0.1570 -2.5665 16 6 6.6165 0.3755 -2.6050 17 9 6.1303 1.5387 -3.0904 18 6 2.0423 -0.7185 -1.2470 19 1 1.6033 -1.7149 -1.2973 20 6 1.6534 0.0800 -2.4928 21 7 1.9473 -0.7103 -3.6908 22 6 1.5930 -0.2382 -4.9264 23 1 1.0972 0.7170 -5.0178 24 6 1.8719 -0.9867 -6.0617 25 7 2.4766 -2.1505 -5.9504 26 14 1.3879 -0.3431 -7.7471 27 1 2.5020 0.4632 -8.3077 28 1 1.1013 -1.4865 -8.6501 29 1 0.1759 0.5059 -7.6235 30 1 -0.3633 0.5127 0.8906 31 1 -0.3633 0.5149 -0.8893 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6973 -1.7571 1.2355 34 1 1.6577 -0.2240 2.1388 35 1 3.9334 -1.1884 2.1677 36 1 3.9155 0.3401 1.2546 37 1 3.8388 -2.4806 0.0874 38 1 5.1905 -1.3250 -0.0140 39 1 5.5820 -2.5751 -1.2780 40 1 9.5477 -1.1939 -2.0335 41 1 8.6594 0.9175 -2.9254 42 1 0.5881 0.3081 -2.4604 43 1 2.2231 1.0089 -2.5215 44 1 2.3929 -1.5679 -3.6088 45 1 2.6719 -2.6734 -6.7437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271716559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:50 Heat of formation + Delta-G solvation = -40.494841 kcal Electronic energy + Delta-G solvation = -31183.743085 eV Core-core repulsion = 26839.415707 eV Total energy + Delta-G solvation = -4344.327378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.99978 -48.72143 -40.51995 -38.56279 -37.09132 -34.72729 -33.55654 -32.13195 -31.42742 -30.26142 -29.90970 -27.08154 -26.09212 -24.52576 -23.58033 -22.79205 -22.35565 -21.00185 -20.35468 -19.40217 -17.59018 -17.45753 -17.08521 -16.81815 -16.14400 -15.92469 -15.44495 -15.19991 -14.89431 -14.72963 -14.52500 -14.41549 -14.16280 -13.88402 -13.68974 -13.45814 -13.10983 -12.92763 -12.86748 -12.59341 -12.42633 -12.32061 -12.04937 -11.88854 -11.69268 -11.49394 -11.27703 -10.96999 -10.86595 -10.69955 -10.60290 -10.57691 -10.16009 -9.81581 -9.52277 -9.24575 -8.77295 -8.61957 -8.37133 -8.10226 -6.53625 -5.57643 -2.75091 0.67870 0.90632 2.97745 3.24765 3.54227 3.59936 3.60704 3.63488 4.09007 4.17001 4.45955 4.59965 4.72731 4.74738 4.79589 4.88472 4.93134 5.02041 5.07020 5.30479 5.42277 5.51409 5.58876 5.69832 5.73107 5.75278 5.78503 5.79472 5.83116 5.83823 5.90817 5.93698 5.98024 6.00472 6.11390 6.16735 6.31811 6.43666 6.58325 6.62957 6.69188 6.93578 7.27578 7.85244 7.86862 8.60456 8.81717 9.71661 10.30696 10.64809 11.65977 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008377 B = 0.005584 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.505905 B = 5013.542471 C = 7185.337133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.134 4.134 6 C 0.098 3.902 7 N -0.609 5.609 8 C 0.510 3.490 9 O -0.420 6.420 10 C -0.115 4.115 11 C -0.103 4.103 12 C 0.079 3.921 13 F -0.136 7.136 14 C -0.116 4.116 15 C -0.133 4.133 16 C 0.138 3.862 17 F -0.116 7.116 18 C 0.150 3.850 19 H 0.070 0.930 20 C 0.156 3.844 21 N -0.693 5.693 22 C -0.206 4.206 23 H 0.066 0.934 24 C -0.022 4.022 25 N -0.936 5.936 26 Si 0.903 3.097 27 H -0.293 1.293 28 H -0.294 1.294 29 H -0.284 1.284 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.022 0.978 43 H 0.043 0.957 44 H 0.379 0.621 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.891 1.582 18.145 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.172 4.172 6 C -0.025 4.025 7 N -0.347 5.347 8 C 0.295 3.705 9 O -0.287 6.287 10 C -0.120 4.120 11 C -0.122 4.122 12 C 0.060 3.940 13 F -0.115 7.115 14 C -0.135 4.135 15 C -0.152 4.152 16 C 0.117 3.883 17 F -0.094 7.094 18 C 0.047 3.953 19 H 0.088 0.912 20 C 0.028 3.972 21 N -0.335 5.335 22 C -0.338 4.338 23 H 0.084 0.916 24 C -0.216 4.216 25 N -0.586 5.586 26 Si 0.735 3.265 27 H -0.221 1.221 28 H -0.221 1.221 29 H -0.210 1.210 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.169 0.831 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.039 0.961 43 H 0.060 0.940 44 H 0.212 0.788 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.494 2.042 17.417 19.485 hybrid contribution 0.149 -0.176 -0.945 0.973 sum 8.643 1.866 16.472 18.695 Atomic orbital electron populations 1.21841 0.94383 1.02110 1.02015 1.21403 0.96068 1.00084 0.94390 0.90876 1.21575 0.94983 1.00854 0.97610 1.21924 0.96442 1.01313 0.97548 1.22015 0.98709 0.96977 0.84803 1.47650 1.06206 1.63081 1.17756 1.17841 0.84769 0.84232 0.83697 1.91247 1.70905 1.35032 1.31483 1.20167 0.95535 0.94330 1.01961 1.21341 0.93874 0.97592 0.99423 1.17481 0.91789 0.83384 1.01378 1.91514 1.87998 1.46212 1.85752 1.21018 1.00553 0.92535 0.99386 1.20927 0.93280 0.98805 1.02219 1.17653 0.91336 0.82719 0.96590 1.91593 1.88499 1.44658 1.84670 1.21449 0.78354 0.99655 0.95844 0.91216 1.21036 0.96231 0.95257 0.84640 1.42302 1.69234 1.21051 1.00946 1.19176 1.28908 1.01513 0.84176 0.91576 1.24632 1.02291 0.97283 0.97425 1.69658 1.47957 1.13182 1.27779 0.86223 0.77872 0.77384 0.85010 1.22076 1.22098 1.20988 0.92886 0.91547 0.92580 0.91806 0.91942 0.91077 0.91610 0.91655 0.89465 0.83091 0.83707 0.83405 0.96098 0.93983 0.78761 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.98 37.16 0.33 -1.40 16 2 C -0.10 -1.28 2.32 -90.72 -0.21 -1.49 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.11 -1.15 5.17 -26.69 -0.14 -1.29 16 5 C -0.13 -1.31 6.08 -26.61 -0.16 -1.47 16 6 C 0.10 1.14 4.83 -3.71 -0.02 1.13 16 7 N -0.61 -9.78 2.98 -166.63 -0.50 -10.27 16 8 C 0.51 9.89 6.64 -12.40 -0.08 9.81 16 9 O -0.42 -10.26 9.97 5.30 0.05 -10.20 16 10 C -0.12 -1.89 5.21 -104.92 -0.55 -2.44 16 11 C -0.10 -1.40 7.34 -39.12 -0.29 -1.68 16 12 C 0.08 0.96 7.29 -39.49 -0.29 0.67 16 13 F -0.14 -1.63 17.26 2.25 0.04 -1.59 16 14 C -0.12 -1.22 10.01 -39.45 -0.39 -1.61 16 15 C -0.13 -1.56 10.01 -39.57 -0.40 -1.96 16 16 C 0.14 2.17 7.24 -38.97 -0.28 1.89 16 17 F -0.12 -2.12 16.19 2.25 0.04 -2.09 16 18 C 0.15 2.50 2.37 -67.82 -0.16 2.34 16 19 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 20 C 0.16 3.34 4.80 -4.04 -0.02 3.32 16 21 N -0.69 -18.46 3.24 -59.91 -0.19 -18.65 16 22 C -0.21 -6.10 9.70 -15.06 -0.15 -6.25 16 23 H 0.07 1.94 7.83 -52.48 -0.41 1.52 16 24 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 25 N -0.94 -29.69 13.06 55.49 0.72 -28.96 16 26 Si 0.90 23.87 29.55 -169.99 -5.02 18.85 16 27 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 28 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 29 H -0.28 -7.27 7.11 56.52 0.40 -6.86 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.88 6.42 -51.93 -0.33 0.55 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 38 H 0.09 0.95 4.60 -51.93 -0.24 0.71 16 39 H 0.15 1.88 6.32 -52.49 -0.33 1.55 16 40 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.02 0.45 6.23 -51.93 -0.32 0.13 16 43 H 0.04 1.00 6.29 -51.93 -0.33 0.67 16 44 H 0.38 10.74 7.10 -40.82 -0.29 10.45 16 45 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -34.73 359.48 -8.37 -43.10 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.04 Total: 5.61 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -2.89 Total: -1.20 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.03 Total: -57.89 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.05 Total: -10.20 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.08 Total: -3.68 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.02 Total: 18.85 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.73 -8.37 -43.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271716559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.607 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds