Wall clock time and date at job start Tue Mar 31 2020 21:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.49467 * 2 1 4 4 C 1.53042 * 109.49905 * 120.06490 * 2 1 3 5 5 C 1.53039 * 109.53559 * 181.34982 * 4 2 1 6 6 C 1.53193 * 109.31141 * 298.63517 * 5 4 2 7 7 N 1.46918 * 108.77735 * 54.64067 * 6 5 4 8 8 C 1.34772 * 120.63500 * 126.36487 * 7 6 5 9 9 O 1.21572 * 120.00117 * 185.77743 * 8 7 6 10 10 C 1.47694 * 119.99745 * 5.77838 * 8 7 6 11 11 C 1.39655 * 120.15405 * 37.89910 * 10 8 7 12 12 C 1.38065 * 119.85267 * 180.02562 * 11 10 8 13 13 F 1.35100 * 119.92247 * 179.97438 * 12 11 10 14 14 C 1.38654 * 120.16572 * 0.25528 * 12 11 10 15 15 C 1.38190 * 120.31458 * 359.48573 * 14 12 11 16 16 C 1.38312 * 120.14364 * 0.51225 * 15 14 12 17 17 F 1.35094 * 120.08434 * 179.72572 * 16 15 14 18 18 C 1.46933 * 118.73692 * 306.63917 * 7 6 5 19 19 H 1.09001 * 109.58626 * 293.57495 * 18 7 6 20 20 C 1.53001 * 109.58991 * 173.14636 * 18 7 6 21 21 N 1.46497 * 109.47016 * 69.68159 * 20 18 7 22 22 C 1.36933 * 119.99917 * 175.30089 * 21 20 18 23 23 H 1.08005 * 120.00351 * 0.02562 * 22 21 20 24 24 C 1.38814 * 120.00418 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99615 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 120.00459 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46868 * 90.00149 * 26 24 22 28 28 H 1.48499 * 109.47502 * 210.00133 * 26 24 22 29 29 H 1.48494 * 109.47421 * 330.00414 * 26 24 22 30 30 H 1.08994 * 109.46764 * 299.92846 * 1 2 3 31 31 H 1.08995 * 109.47268 * 59.93149 * 1 2 3 32 32 H 1.09001 * 109.46397 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.45788 * 61.32988 * 4 2 1 34 34 H 1.09002 * 109.44538 * 301.36555 * 4 2 1 35 35 H 1.09000 * 109.49075 * 178.68526 * 5 4 2 36 36 H 1.08997 * 109.49812 * 58.58673 * 5 4 2 37 37 H 1.08996 * 109.58918 * 294.84647 * 6 5 4 38 38 H 1.09006 * 109.69971 * 174.49166 * 6 5 4 39 39 H 1.08001 * 120.07451 * 359.97438 * 11 10 8 40 40 H 1.08002 * 119.84496 * 179.74227 * 14 12 11 41 41 H 1.07998 * 119.93050 * 180.25906 * 15 14 12 42 42 H 1.08996 * 109.47474 * 189.68503 * 20 18 7 43 43 H 1.09000 * 109.46758 * 309.68437 * 20 18 7 44 44 H 0.96996 * 120.00131 * 355.30154 * 21 20 18 45 45 H 0.96999 * 119.99767 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0276 0.0000 4 6 2.0409 -0.7227 1.2485 5 6 3.5709 -0.6939 1.2665 6 6 4.1060 -1.4254 0.0315 7 7 3.5054 -0.8282 -1.1690 8 6 4.2819 -0.3843 -2.1772 9 8 3.7814 0.2021 -3.1171 10 6 5.7410 -0.6103 -2.1400 11 6 6.2526 -1.8096 -1.6396 12 6 7.6176 -2.0141 -1.6072 13 9 8.1141 -3.1735 -1.1230 14 6 8.4806 -1.0302 -2.0651 15 6 7.9817 0.1570 -2.5665 16 6 6.6165 0.3755 -2.6050 17 9 6.1303 1.5387 -3.0904 18 6 2.0423 -0.7185 -1.2470 19 1 1.6033 -1.7149 -1.2973 20 6 1.6534 0.0800 -2.4928 21 7 1.9473 -0.7103 -3.6908 22 6 1.5930 -0.2382 -4.9264 23 1 1.0972 0.7170 -5.0178 24 6 1.8719 -0.9867 -6.0617 25 7 2.4766 -2.1505 -5.9504 26 14 1.3879 -0.3431 -7.7471 27 1 2.5020 0.4632 -8.3077 28 1 1.1013 -1.4865 -8.6501 29 1 0.1759 0.5059 -7.6235 30 1 -0.3633 0.5127 0.8906 31 1 -0.3633 0.5149 -0.8893 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6973 -1.7571 1.2355 34 1 1.6577 -0.2240 2.1388 35 1 3.9334 -1.1884 2.1677 36 1 3.9155 0.3401 1.2546 37 1 3.8388 -2.4806 0.0874 38 1 5.1905 -1.3250 -0.0140 39 1 5.5820 -2.5751 -1.2780 40 1 9.5477 -1.1939 -2.0335 41 1 8.6594 0.9175 -2.9254 42 1 0.5881 0.3081 -2.4604 43 1 2.2231 1.0089 -2.5215 44 1 2.3929 -1.5679 -3.6088 45 1 2.6719 -2.6734 -6.7437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271716559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:49 Heat of formation + Delta-G solvation = -62.247403 kcal Electronic energy + Delta-G solvation = -31184.686347 eV Core-core repulsion = 26839.415707 eV Total energy + Delta-G solvation = -4345.270640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.01538 -49.97847 -41.84517 -39.66475 -38.40947 -36.43525 -34.98502 -33.69680 -32.48900 -31.96138 -31.06444 -28.54947 -27.20061 -26.11414 -24.96501 -23.99578 -23.76634 -22.29495 -21.48944 -20.63939 -19.24061 -18.62312 -18.39411 -18.21012 -17.38691 -17.11443 -16.74696 -16.57890 -16.40764 -16.05233 -15.62839 -15.53505 -15.47659 -15.38214 -15.07423 -14.80685 -14.57871 -14.20763 -14.08976 -13.81784 -13.76212 -13.57589 -13.39049 -13.02582 -12.97200 -12.85135 -12.80611 -12.49557 -12.36443 -12.11730 -11.94872 -11.85147 -11.63632 -11.54982 -11.13125 -10.91295 -10.36313 -9.95325 -9.69458 -9.50288 -8.65793 -7.86490 -5.05332 -0.40598 -0.14163 1.40463 1.44618 1.51721 1.78037 1.97408 2.37161 2.59517 3.04666 3.07409 3.36941 3.47250 3.54983 3.73991 3.78537 3.85119 3.92085 4.00045 4.09812 4.25892 4.31532 4.39562 4.49295 4.53442 4.59377 4.76190 4.78646 4.81324 4.82738 4.84839 4.87097 4.93583 4.96391 5.02529 5.10385 5.22344 5.27548 5.29803 5.40920 5.49479 5.53325 5.62919 5.78685 6.34835 6.50582 7.36977 7.42234 8.19815 8.43042 9.38149 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008377 B = 0.005584 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.505905 B = 5013.542471 C = 7185.337133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.062 0.938 4 C -0.107 4.107 5 C -0.128 4.128 6 C 0.089 3.911 7 N -0.605 5.605 8 C 0.511 3.489 9 O -0.490 6.490 10 C -0.144 4.144 11 C -0.101 4.101 12 C 0.084 3.916 13 F -0.130 7.130 14 C -0.090 4.090 15 C -0.120 4.120 16 C 0.108 3.892 17 F -0.141 7.141 18 C 0.154 3.846 19 H 0.065 0.935 20 C 0.162 3.838 21 N -0.703 5.703 22 C -0.210 4.210 23 H 0.060 0.940 24 C -0.084 4.084 25 N -0.972 5.972 26 Si 0.966 3.034 27 H -0.297 1.297 28 H -0.292 1.292 29 H -0.271 1.271 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.159 0.841 40 H 0.189 0.811 41 H 0.180 0.820 42 H 0.021 0.979 43 H 0.017 0.983 44 H 0.366 0.634 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.861 0.928 20.890 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.080 0.920 4 C -0.145 4.145 5 C -0.166 4.166 6 C -0.032 4.032 7 N -0.341 5.341 8 C 0.297 3.703 9 O -0.362 6.362 10 C -0.148 4.148 11 C -0.120 4.120 12 C 0.065 3.935 13 F -0.109 7.109 14 C -0.109 4.109 15 C -0.138 4.138 16 C 0.087 3.913 17 F -0.120 7.120 18 C 0.051 3.949 19 H 0.082 0.918 20 C 0.035 3.965 21 N -0.343 5.343 22 C -0.343 4.343 23 H 0.078 0.922 24 C -0.275 4.275 25 N -0.625 5.625 26 Si 0.796 3.204 27 H -0.225 1.225 28 H -0.218 1.218 29 H -0.196 1.196 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.176 0.824 40 H 0.207 0.793 41 H 0.198 0.802 42 H 0.039 0.961 43 H 0.035 0.965 44 H 0.197 0.803 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.468 1.395 20.259 22.846 hybrid contribution -0.265 0.037 -1.603 1.626 sum 10.202 1.432 18.656 21.312 Atomic orbital electron populations 1.21819 0.93519 1.02480 1.02229 1.21359 0.96742 0.99270 0.93834 0.91998 1.21571 0.95219 1.01128 0.96537 1.21920 0.96077 1.01000 0.97585 1.22382 0.99308 0.97851 0.83662 1.47841 1.05874 1.61892 1.18444 1.18500 0.86348 0.82262 0.83170 1.91219 1.72506 1.38614 1.33881 1.20028 0.93861 0.96181 1.04717 1.21346 0.95090 0.96550 0.99022 1.17528 0.91287 0.83830 1.00900 1.91540 1.87742 1.45996 1.85606 1.21496 1.02453 0.90756 0.96157 1.21277 0.91602 0.99979 1.00938 1.18182 0.93135 0.82193 0.97772 1.91526 1.89098 1.46041 1.85307 1.21347 0.79163 0.98911 0.95460 0.91756 1.20999 0.95515 0.94612 0.85345 1.42299 1.69612 1.20939 1.01488 1.19458 1.27932 1.00994 0.85880 0.92195 1.25367 1.03433 0.97904 1.00814 1.69816 1.50214 1.14470 1.28047 0.85222 0.77663 0.76802 0.80694 1.22549 1.21839 1.19570 0.90209 0.93777 0.92102 0.90941 0.89476 0.87617 0.92325 0.90050 0.88495 0.82372 0.79338 0.80221 0.96130 0.96541 0.80262 0.94661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.98 71.98 0.65 -2.63 16 2 C -0.09 -2.32 2.32 -10.86 -0.03 -2.34 16 3 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 4 C -0.11 -1.87 5.17 30.62 0.16 -1.71 16 5 C -0.13 -2.12 6.08 30.67 0.19 -1.93 16 6 C 0.09 1.93 4.83 86.36 0.42 2.35 16 7 N -0.60 -19.83 2.98 -799.38 -2.38 -22.21 16 8 C 0.51 20.88 6.64 86.74 0.58 21.46 16 9 O -0.49 -25.81 9.97 -3.94 -0.04 -25.85 16 10 C -0.14 -4.79 5.21 -20.06 -0.10 -4.89 16 11 C -0.10 -2.61 7.34 22.57 0.17 -2.44 16 12 C 0.08 1.77 7.29 22.33 0.16 1.94 16 13 F -0.13 -2.65 17.26 44.97 0.78 -1.87 16 14 C -0.09 -1.52 10.01 22.36 0.22 -1.30 16 15 C -0.12 -2.49 10.01 22.28 0.22 -2.27 16 16 C 0.11 3.41 7.24 22.67 0.16 3.57 16 17 F -0.14 -5.46 16.19 44.97 0.73 -4.73 16 18 C 0.15 5.32 2.37 44.83 0.11 5.42 16 19 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 20 C 0.16 7.42 4.80 86.38 0.41 7.84 16 21 N -0.70 -39.87 3.24 -343.46 -1.11 -40.98 16 22 C -0.21 -13.13 9.70 84.03 0.82 -12.32 16 23 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 24 C -0.08 -5.34 5.50 84.86 0.47 -4.87 16 25 N -0.97 -64.46 13.06 21.65 0.28 -64.18 16 26 Si 0.97 51.08 29.55 68.60 2.03 53.10 16 27 H -0.30 -15.78 7.11 99.48 0.71 -15.08 16 28 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16 29 H -0.27 -13.52 7.11 99.48 0.71 -12.81 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.04 1.20 6.42 -2.39 -0.02 1.18 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 38 H 0.10 1.93 4.60 -2.38 -0.01 1.92 16 39 H 0.16 3.74 6.32 -2.91 -0.02 3.72 16 40 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.02 0.95 6.23 -2.39 -0.01 0.93 16 43 H 0.02 0.86 6.29 -2.39 -0.02 0.85 16 44 H 0.37 22.10 7.10 -92.71 -0.66 21.44 16 45 H 0.24 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -82.91 359.48 5.25 -77.66 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.37 Total: 23.19 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 4.60 Total: 5.87 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -3.21 Total: -127.36 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.04 Total: -25.85 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 1.50 Total: -6.60 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.03 Total: 53.10 kcal Total: -82.91 5.25 -77.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271716559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.410 kcal (2) G-P(sol) polarization free energy of solvation -82.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds