Wall clock time and date at job start Tue Mar 31 2020 21:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 119.99892 * 2 1 4 4 O 1.45196 * 109.47363 * 134.99789 * 3 2 1 5 5 C 1.34636 * 117.00068 * 180.02562 * 4 3 2 6 6 O 1.21504 * 120.00292 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99971 * 179.97438 * 5 4 3 8 8 C 1.47494 * 125.66572 * 0.04410 * 7 5 4 9 9 C 1.55033 * 104.90628 * 203.96718 * 8 7 5 10 10 C 1.54453 * 101.52656 * 323.67748 * 9 8 7 11 11 C 1.47192 * 125.66554 * 179.97438 * 7 5 4 12 12 C 1.52188 * 110.34061 * 153.46025 * 10 9 8 13 13 N 1.46248 * 109.95926 * 169.57261 * 12 10 9 14 14 C 1.46502 * 118.79802 * 162.74272 * 13 12 10 15 15 C 1.53002 * 109.46795 * 269.99591 * 14 13 12 16 16 C 1.50700 * 109.46706 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99889 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99915 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00237 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00128 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46758 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46843 * 120.00456 * 20 18 16 23 23 H 1.48494 * 109.47458 * 240.00749 * 20 18 16 24 24 C 1.33843 * 122.39962 * 342.74096 * 13 12 10 25 25 O 1.21283 * 118.64466 * 182.87644 * 24 13 12 26 26 C 1.50286 * 122.70280 * 2.59559 * 24 13 12 27 27 O 1.42277 * 110.33751 * 276.03580 * 10 9 8 28 28 H 1.07996 * 120.00670 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99959 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.00670 * 179.97438 * 2 1 3 31 31 H 1.09009 * 109.46464 * 15.00003 * 3 2 1 32 32 H 1.08996 * 109.47296 * 255.00652 * 3 2 1 33 33 H 1.08997 * 110.34979 * 322.82836 * 8 7 5 34 34 H 1.08999 * 110.34853 * 85.00210 * 8 7 5 35 35 H 1.08997 * 111.01581 * 205.61122 * 9 8 7 36 36 H 1.09006 * 111.00807 * 81.73798 * 9 8 7 37 37 H 1.09000 * 109.90933 * 59.13394 * 11 7 5 38 38 H 1.08998 * 109.91602 * 297.86317 * 11 7 5 39 39 H 1.08995 * 109.39230 * 289.71772 * 12 10 9 40 40 H 1.08998 * 109.39226 * 49.42174 * 12 10 9 41 41 H 1.08991 * 109.47149 * 30.00106 * 14 13 12 42 42 H 1.09007 * 109.46887 * 150.00146 * 14 13 12 43 43 H 1.08994 * 109.47102 * 299.99731 * 15 14 13 44 44 H 1.08999 * 109.47106 * 60.00358 * 15 14 13 45 45 H 0.96999 * 120.00715 * 179.97438 * 19 18 16 46 46 H 1.09004 * 109.38882 * 103.53308 * 26 24 13 47 47 H 1.09000 * 109.39445 * 223.34000 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1437 1.2404 0.9680 5 6 3.9187 2.3342 1.0931 6 8 3.6982 3.3162 0.4124 7 7 4.9386 2.3403 1.9742 8 6 5.3169 1.2228 2.8594 9 6 6.0693 1.8872 4.0409 10 6 6.8272 3.0256 3.3232 11 6 5.8608 3.4626 2.2118 12 6 7.0961 4.1721 4.2873 13 7 8.0200 5.1291 3.6795 14 6 8.1203 6.4741 4.2516 15 6 7.1066 7.3952 3.5697 16 6 7.2102 8.7788 4.1577 17 1 7.9276 8.9811 4.9393 18 6 6.3898 9.7868 3.6972 19 7 5.5166 9.5406 2.7451 20 14 6.5177 11.5018 4.4266 21 1 7.5693 11.5166 5.4750 22 1 6.8718 12.4693 3.3571 23 1 5.2141 11.8828 5.0270 24 6 8.7773 4.8210 2.6198 25 8 9.5587 5.6496 2.2030 26 6 8.7034 3.4884 1.9289 27 8 8.0446 2.5382 2.7714 28 1 -0.5401 0.9352 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3853 2.1161 0.2660 32 1 2.4753 1.4869 -0.9926 33 1 4.4271 0.7061 3.2190 34 1 5.9717 0.5278 2.3337 35 1 6.7639 1.1871 4.5052 36 1 5.3693 2.2858 4.7753 37 1 5.3010 4.3417 2.5313 38 1 6.4177 3.6847 1.3015 39 1 6.1580 4.6745 4.5228 40 1 7.5343 3.7785 5.2044 41 1 7.9106 6.4309 5.3203 42 1 9.1268 6.8618 4.0941 43 1 7.3164 7.4383 2.5010 44 1 6.1001 7.0075 3.7271 45 1 4.9392 10.2496 2.4213 46 1 8.1467 3.5939 0.9978 47 1 9.7120 3.1379 1.7098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274346074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:45 Heat of formation + Delta-G solvation = -116.801545 kcal Electronic energy + Delta-G solvation = -30290.525533 eV Core-core repulsion = 26053.976764 eV Total energy + Delta-G solvation = -4236.548770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.35174 -40.32504 -38.68533 -37.00524 -36.12095 -35.51042 -34.31302 -33.11624 -31.96548 -30.30804 -29.21842 -28.08318 -27.13621 -25.94988 -24.55688 -23.61530 -21.93008 -20.97222 -20.55079 -20.39309 -18.44093 -18.38888 -17.76358 -17.15517 -16.87146 -16.74115 -16.07663 -15.77123 -15.69296 -15.32627 -14.72735 -14.58282 -14.35523 -14.25671 -14.01481 -13.67817 -13.30249 -13.23555 -12.93788 -12.80219 -12.71454 -12.53808 -12.37624 -12.23566 -11.89418 -11.61280 -11.53041 -11.41091 -11.07042 -11.05399 -10.92566 -10.70420 -10.66990 -10.35882 -9.93773 -9.91182 -9.89104 -9.34376 -9.03313 -8.96008 -8.37034 -8.17471 -6.01158 -4.04926 1.45736 2.12073 2.70333 2.81506 3.11116 3.31354 3.36898 3.39597 3.43311 3.71015 4.12323 4.16235 4.25897 4.46033 4.50775 4.67554 4.68926 4.91235 4.94300 5.01445 5.08002 5.14528 5.21177 5.34721 5.37687 5.38986 5.40088 5.43895 5.47343 5.58118 5.66166 5.71059 5.86555 6.03445 6.08742 6.10085 6.23818 6.48785 6.59447 6.78250 6.82340 7.23114 7.53540 7.67312 7.86422 7.97126 8.13194 8.32264 8.45465 9.01475 9.59258 11.10046 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.010729 B = 0.003071 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.189877 B = 9113.999980 C =10939.968311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.157 4.157 3 C 0.113 3.887 4 O -0.365 6.365 5 C 0.664 3.336 6 O -0.562 6.562 7 N -0.600 5.600 8 C 0.107 3.893 9 C -0.114 4.114 10 C 0.090 3.910 11 C 0.101 3.899 12 C 0.101 3.899 13 N -0.599 5.599 14 C 0.112 3.888 15 C 0.014 3.986 16 C -0.521 4.521 17 H 0.057 0.943 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.481 3.519 25 O -0.536 6.536 26 C 0.045 3.955 27 O -0.353 6.353 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.021 0.979 44 H 0.015 0.985 45 H 0.261 0.739 46 H 0.090 0.910 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.089 -24.694 0.312 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C 0.039 3.961 4 O -0.279 6.279 5 C 0.419 3.581 6 O -0.450 6.450 7 N -0.342 5.342 8 C -0.015 4.015 9 C -0.152 4.152 10 C 0.049 3.951 11 C -0.021 4.021 12 C -0.023 4.023 13 N -0.332 5.332 14 C -0.009 4.009 15 C -0.024 4.024 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.267 3.733 25 O -0.413 6.413 26 C -0.034 4.034 27 O -0.271 6.271 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.138 0.862 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.039 0.961 44 H 0.033 0.967 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.942 -24.078 -0.290 24.581 hybrid contribution -0.253 1.292 0.073 1.318 sum -5.195 -22.786 -0.218 23.372 Atomic orbital electron populations 1.23922 0.95392 1.02736 0.98472 1.22679 0.95640 0.97649 1.01586 1.21989 0.86121 0.96667 0.91353 1.86216 1.42733 1.39164 1.59826 1.17433 0.79243 0.81582 0.79872 1.91073 1.72162 1.34585 1.47156 1.46978 1.29826 1.17472 1.39901 1.22393 0.99897 0.89171 0.90076 1.22767 0.98711 0.96658 0.97077 1.22174 0.85048 0.94949 0.92895 1.22600 0.90815 0.89181 0.99461 1.21884 0.95691 0.88935 0.95767 1.47755 1.40042 1.14758 1.30655 1.21981 1.02830 0.79239 0.96800 1.19366 0.93096 0.93261 0.96648 1.21093 1.19912 0.94279 1.20707 0.92432 1.25007 0.95278 0.99030 0.94989 1.69981 1.22159 1.33026 1.27794 0.86505 0.77819 0.84415 0.79077 1.19673 1.20961 1.21019 1.20669 0.81226 0.90053 0.81351 1.90761 1.37596 1.49579 1.63380 1.22939 1.00269 0.86338 0.93886 1.88007 1.34795 1.39197 1.65124 0.88027 0.87322 0.86190 0.90421 0.90066 0.89617 0.90442 0.87720 0.88160 0.88728 0.90076 0.88746 0.90137 0.91608 0.90361 0.96054 0.96687 0.92961 0.89272 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 14.31 29.02 0.42 -0.60 16 2 C -0.16 -1.16 9.90 -36.02 -0.36 -1.52 16 3 C 0.11 1.13 5.89 36.01 0.21 1.34 16 4 O -0.36 -4.40 9.74 -40.31 -0.39 -4.79 16 5 C 0.66 9.78 8.62 54.06 0.47 10.24 16 6 O -0.56 -10.44 16.46 -19.27 -0.32 -10.76 16 7 N -0.60 -7.60 3.33 -176.47 -0.59 -8.19 16 8 C 0.11 0.92 6.93 -2.42 -0.02 0.90 16 9 C -0.11 -0.87 6.20 -24.90 -0.15 -1.02 16 10 C 0.09 1.02 0.80 -89.95 -0.07 0.94 16 11 C 0.10 1.39 5.88 -3.34 -0.02 1.37 16 12 C 0.10 1.29 5.27 -4.59 -0.02 1.27 16 13 N -0.60 -10.40 2.82 -174.83 -0.49 -10.90 16 14 C 0.11 2.33 5.27 -4.04 -0.02 2.31 16 15 C 0.01 0.37 5.29 -27.88 -0.15 0.22 16 16 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 20 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 C 0.48 8.63 7.47 -11.60 -0.09 8.54 16 25 O -0.54 -11.96 16.33 5.55 0.09 -11.87 16 26 C 0.04 0.59 6.42 35.81 0.23 0.82 16 27 O -0.35 -4.18 10.41 -35.23 -0.37 -4.54 16 28 H 0.10 0.59 7.90 -52.49 -0.41 0.17 16 29 H 0.11 0.48 8.06 -52.48 -0.42 0.05 16 30 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.08 0.80 7.86 -51.92 -0.41 0.39 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.64 8.02 -51.93 -0.42 0.22 16 37 H 0.09 1.50 7.58 -51.93 -0.39 1.11 16 38 H 0.08 1.22 5.79 -51.93 -0.30 0.92 16 39 H 0.09 1.22 7.78 -51.93 -0.40 0.82 16 40 H 0.08 0.85 8.12 -51.93 -0.42 0.42 16 41 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 42 H 0.08 1.76 7.22 -51.92 -0.37 1.39 16 43 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.09 1.14 6.43 -51.93 -0.33 0.81 16 47 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 389.86 15.07 5.88 5.88 Total: -1.00 -36.84 389.86 -7.69 -44.53 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -7.23 Total: -1.04 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 0.01 Total: 11.32 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.35 Total: -45.60 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.99 Total: -31.96 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.84 -7.69 -44.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274346074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.273 kcal (2) G-P(sol) polarization free energy of solvation -36.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds