Wall clock time and date at job start Tue Mar 31 2020 21:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 119.99892 * 2 1 4 4 O 1.45196 * 109.47363 * 134.99789 * 3 2 1 5 5 C 1.34636 * 117.00068 * 180.02562 * 4 3 2 6 6 O 1.21504 * 120.00292 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99971 * 179.97438 * 5 4 3 8 8 C 1.47494 * 125.66572 * 0.04410 * 7 5 4 9 9 C 1.55033 * 104.90628 * 203.96718 * 8 7 5 10 10 C 1.54453 * 101.52656 * 323.67748 * 9 8 7 11 11 C 1.47192 * 125.66554 * 179.97438 * 7 5 4 12 12 C 1.52188 * 110.34061 * 153.46025 * 10 9 8 13 13 N 1.46248 * 109.95926 * 169.57261 * 12 10 9 14 14 C 1.46502 * 118.79802 * 162.74272 * 13 12 10 15 15 C 1.53002 * 109.46795 * 269.99591 * 14 13 12 16 16 C 1.50700 * 109.46706 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99889 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99915 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00237 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 120.00128 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46758 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46843 * 120.00456 * 20 18 16 23 23 H 1.48494 * 109.47458 * 240.00749 * 20 18 16 24 24 C 1.33843 * 122.39962 * 342.74096 * 13 12 10 25 25 O 1.21283 * 118.64466 * 182.87644 * 24 13 12 26 26 C 1.50286 * 122.70280 * 2.59559 * 24 13 12 27 27 O 1.42277 * 110.33751 * 276.03580 * 10 9 8 28 28 H 1.07996 * 120.00670 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99959 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.00670 * 179.97438 * 2 1 3 31 31 H 1.09009 * 109.46464 * 15.00003 * 3 2 1 32 32 H 1.08996 * 109.47296 * 255.00652 * 3 2 1 33 33 H 1.08997 * 110.34979 * 322.82836 * 8 7 5 34 34 H 1.08999 * 110.34853 * 85.00210 * 8 7 5 35 35 H 1.08997 * 111.01581 * 205.61122 * 9 8 7 36 36 H 1.09006 * 111.00807 * 81.73798 * 9 8 7 37 37 H 1.09000 * 109.90933 * 59.13394 * 11 7 5 38 38 H 1.08998 * 109.91602 * 297.86317 * 11 7 5 39 39 H 1.08995 * 109.39230 * 289.71772 * 12 10 9 40 40 H 1.08998 * 109.39226 * 49.42174 * 12 10 9 41 41 H 1.08991 * 109.47149 * 30.00106 * 14 13 12 42 42 H 1.09007 * 109.46887 * 150.00146 * 14 13 12 43 43 H 1.08994 * 109.47102 * 299.99731 * 15 14 13 44 44 H 1.08999 * 109.47106 * 60.00358 * 15 14 13 45 45 H 0.96999 * 120.00715 * 179.97438 * 19 18 16 46 46 H 1.09004 * 109.38882 * 103.53308 * 26 24 13 47 47 H 1.09000 * 109.39445 * 223.34000 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1437 1.2404 0.9680 5 6 3.9187 2.3342 1.0931 6 8 3.6982 3.3162 0.4124 7 7 4.9386 2.3403 1.9742 8 6 5.3169 1.2228 2.8594 9 6 6.0693 1.8872 4.0409 10 6 6.8272 3.0256 3.3232 11 6 5.8608 3.4626 2.2118 12 6 7.0961 4.1721 4.2873 13 7 8.0200 5.1291 3.6795 14 6 8.1203 6.4741 4.2516 15 6 7.1066 7.3952 3.5697 16 6 7.2102 8.7788 4.1577 17 1 7.9276 8.9811 4.9393 18 6 6.3898 9.7868 3.6972 19 7 5.5166 9.5406 2.7451 20 14 6.5177 11.5018 4.4266 21 1 7.5693 11.5166 5.4750 22 1 6.8718 12.4693 3.3571 23 1 5.2141 11.8828 5.0270 24 6 8.7773 4.8210 2.6198 25 8 9.5587 5.6496 2.2030 26 6 8.7034 3.4884 1.9289 27 8 8.0446 2.5382 2.7714 28 1 -0.5401 0.9352 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3853 2.1161 0.2660 32 1 2.4753 1.4869 -0.9926 33 1 4.4271 0.7061 3.2190 34 1 5.9717 0.5278 2.3337 35 1 6.7639 1.1871 4.5052 36 1 5.3693 2.2858 4.7753 37 1 5.3010 4.3417 2.5313 38 1 6.4177 3.6847 1.3015 39 1 6.1580 4.6745 4.5228 40 1 7.5343 3.7785 5.2044 41 1 7.9106 6.4309 5.3203 42 1 9.1268 6.8618 4.0941 43 1 7.3164 7.4383 2.5010 44 1 6.1001 7.0075 3.7271 45 1 4.9392 10.2496 2.4213 46 1 8.1467 3.5939 0.9978 47 1 9.7120 3.1379 1.7098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274346074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:44 Heat of formation + Delta-G solvation = -143.292104 kcal Electronic energy + Delta-G solvation = -30291.674250 eV Core-core repulsion = 26053.976764 eV Total energy + Delta-G solvation = -4237.697487 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.46231 -41.48043 -39.92711 -38.04811 -37.21824 -37.04945 -35.16589 -34.97737 -33.07794 -32.01096 -30.29755 -29.26194 -28.24229 -27.06974 -26.30608 -24.59450 -23.49217 -22.10259 -21.83347 -21.01612 -19.65574 -19.44091 -18.90446 -18.71319 -18.19225 -17.93245 -17.51995 -16.96396 -16.87214 -16.50354 -16.21740 -15.81018 -15.51350 -15.39993 -15.10972 -14.64954 -14.56013 -14.42632 -14.34273 -14.12512 -13.94738 -13.74268 -13.55164 -13.37767 -13.28030 -12.90368 -12.83000 -12.60344 -12.40448 -12.18375 -12.14493 -12.00043 -11.92422 -11.83898 -11.83433 -11.52067 -11.39346 -10.62753 -10.51151 -10.47654 -9.99619 -9.71231 -8.24988 -6.37962 0.64220 1.36688 1.38241 1.38792 1.42059 1.52192 1.55112 1.82428 2.34757 2.39948 2.82907 3.08737 3.13551 3.18775 3.34630 3.56774 3.84760 3.97775 3.99975 4.08313 4.10507 4.21437 4.28590 4.36206 4.38175 4.45538 4.46117 4.50789 4.54036 4.66494 4.71439 4.83415 4.89041 4.91173 5.05032 5.07238 5.12593 5.16682 5.41407 5.52699 5.56693 5.66713 5.67563 5.78464 6.13249 6.19652 6.37320 6.77863 7.01207 7.02114 7.32119 8.87088 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.010729 B = 0.003071 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.189877 B = 9113.999980 C =10939.968311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.171 4.171 3 C 0.106 3.894 4 O -0.354 6.354 5 C 0.659 3.341 6 O -0.614 6.614 7 N -0.597 5.597 8 C 0.102 3.898 9 C -0.099 4.099 10 C 0.096 3.904 11 C 0.099 3.901 12 C 0.094 3.906 13 N -0.602 5.602 14 C 0.128 3.872 15 C 0.026 3.974 16 C -0.541 4.541 17 H 0.068 0.932 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.970 3.030 21 H -0.256 1.256 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.470 3.530 25 O -0.590 6.590 26 C 0.057 3.943 27 O -0.337 6.337 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.138 0.862 36 H 0.118 0.882 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.095 0.905 42 H 0.058 0.942 43 H -0.030 1.030 44 H -0.001 1.001 45 H 0.263 0.737 46 H 0.091 0.909 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.245 -27.254 2.748 27.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.189 4.189 3 C 0.033 3.967 4 O -0.268 6.268 5 C 0.414 3.586 6 O -0.505 6.505 7 N -0.338 5.338 8 C -0.019 4.019 9 C -0.136 4.136 10 C 0.055 3.945 11 C -0.023 4.023 12 C -0.028 4.028 13 N -0.333 5.333 14 C 0.006 3.994 15 C -0.012 4.012 16 C -0.579 4.579 17 H 0.086 0.914 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.794 3.206 21 H -0.180 1.180 22 H -0.209 1.209 23 H -0.199 1.199 24 C 0.259 3.741 25 O -0.471 6.471 26 C -0.021 4.021 27 O -0.255 6.255 28 H 0.119 0.881 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.156 0.844 36 H 0.137 0.863 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.138 0.862 41 H 0.113 0.887 42 H 0.077 0.923 43 H -0.011 1.011 44 H 0.017 0.983 45 H 0.072 0.928 46 H 0.109 0.891 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.112 -26.725 2.195 27.298 hybrid contribution -0.307 2.054 -0.735 2.203 sum -5.418 -24.671 1.460 25.301 Atomic orbital electron populations 1.24175 0.94940 1.03885 0.95937 1.22622 0.95964 0.96521 1.03798 1.22206 0.85596 0.98323 0.90620 1.86236 1.42777 1.37574 1.60192 1.17710 0.79673 0.81506 0.79706 1.91033 1.73654 1.36553 1.49300 1.47098 1.28745 1.18292 1.39671 1.22739 1.01235 0.88110 0.89784 1.22905 0.98788 0.95339 0.96583 1.22239 0.84410 0.96057 0.91815 1.22501 0.91135 0.89053 0.99621 1.22263 0.94868 0.88360 0.97285 1.47812 1.40605 1.14206 1.30686 1.21520 0.99776 0.80352 0.97789 1.19165 0.93735 0.94330 0.93962 1.21569 1.19951 0.95436 1.20942 0.91386 1.26044 0.94732 1.03919 0.95279 1.70137 1.23219 1.34615 1.29417 0.85321 0.78525 0.78301 0.78422 1.17999 1.20939 1.19942 1.21609 0.80208 0.91380 0.80902 1.90726 1.39984 1.51630 1.64799 1.22872 1.02009 0.84008 0.93258 1.88043 1.34626 1.38108 1.64746 0.88059 0.84936 0.84882 0.91307 0.90755 0.87572 0.89181 0.84417 0.86326 0.91910 0.92212 0.89121 0.86221 0.88660 0.92341 1.01128 0.98300 0.92831 0.89099 0.82410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 14.31 67.79 0.97 -0.59 16 2 C -0.17 -2.32 9.90 25.66 0.25 -2.06 16 3 C 0.11 2.18 5.89 71.24 0.42 2.59 16 4 O -0.35 -8.48 9.74 -55.46 -0.54 -9.02 16 5 C 0.66 19.97 8.62 129.79 1.12 21.09 16 6 O -0.61 -24.40 16.46 19.83 0.33 -24.07 16 7 N -0.60 -14.91 3.33 -942.63 -3.14 -18.05 16 8 C 0.10 1.44 6.93 86.88 0.60 2.04 16 9 C -0.10 -1.08 6.20 31.78 0.20 -0.89 16 10 C 0.10 1.97 0.80 -10.36 -0.01 1.96 16 11 C 0.10 2.81 5.88 86.46 0.51 3.32 16 12 C 0.09 2.25 5.27 86.16 0.45 2.70 16 13 N -0.60 -21.02 2.82 -825.94 -2.33 -23.36 16 14 C 0.13 5.42 5.27 86.38 0.46 5.88 16 15 C 0.03 1.43 5.29 29.85 0.16 1.59 16 16 C -0.54 -31.44 9.11 25.60 0.23 -31.21 16 17 H 0.07 3.73 7.74 -2.91 -0.02 3.70 16 18 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 19 N -0.93 -59.29 13.29 21.45 0.28 -59.00 16 20 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 21 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 C 0.47 17.27 7.47 87.67 0.66 17.93 16 25 O -0.59 -27.63 16.33 -3.04 -0.05 -27.68 16 26 C 0.06 1.47 6.42 71.11 0.46 1.93 16 27 O -0.34 -7.10 10.41 -148.98 -1.55 -8.65 16 28 H 0.10 1.04 7.90 -2.91 -0.02 1.02 16 29 H 0.13 0.76 8.06 -2.91 -0.02 0.74 16 30 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 31 H 0.07 1.49 7.86 -2.38 -0.02 1.48 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.11 1.14 8.05 -2.39 -0.02 1.12 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.12 0.96 8.02 -2.38 -0.02 0.94 16 37 H 0.06 2.16 7.58 -2.39 -0.02 2.14 16 38 H 0.06 1.92 5.79 -2.39 -0.01 1.91 16 39 H 0.09 2.27 7.78 -2.39 -0.02 2.25 16 40 H 0.12 2.01 8.12 -2.39 -0.02 1.99 16 41 H 0.10 3.47 8.04 -2.39 -0.02 3.45 16 42 H 0.06 2.72 7.22 -2.38 -0.02 2.70 16 43 H -0.03 -1.91 8.14 -2.39 -0.02 -1.93 16 44 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 46 H 0.09 2.37 6.43 -2.38 -0.02 2.35 16 47 H 0.16 3.23 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -86.60 389.86 2.92 -83.68 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.96 Total: 12.09 kcal Atomic # 6 Polarization: 19.69 SS G_CDS: 6.94 Total: 26.62 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -5.19 Total: -100.41 kcal Atomic # 8 Polarization: -67.60 SS G_CDS: -1.81 Total: -69.41 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -86.60 2.92 -83.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274346074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.615 kcal (2) G-P(sol) polarization free energy of solvation -86.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds