Wall clock time and date at job start Tue Mar 31 2020 21:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.32246 * 2 1 4 4 C 1.54905 * 110.45905 * 237.69915 * 2 1 3 5 5 C 1.55158 * 101.57986 * 204.10220 * 4 2 1 6 6 H 1.08997 * 110.87537 * 277.07053 * 5 4 2 7 7 N 1.46905 * 110.71938 * 153.86828 * 5 4 2 8 8 C 1.46895 * 111.00022 * 160.02565 * 7 5 4 9 9 C 1.50704 * 109.47207 * 179.97438 * 8 7 5 10 10 N 1.30494 * 125.64842 * 269.69186 * 9 8 7 11 11 C 1.34126 * 109.25549 * 180.26194 * 10 9 8 12 12 C 1.34666 * 108.02240 * 0.02562 * 11 10 9 13 13 N 1.35044 * 125.64872 * 89.99715 * 9 8 7 14 14 C 1.46499 * 126.39513 * 359.75715 * 13 9 8 15 15 C 1.54327 * 102.94222 * 35.50505 * 5 4 2 16 16 N 1.47017 * 107.26999 * 337.80413 * 15 5 4 17 17 C 1.34774 * 125.65072 * 178.90498 * 16 15 5 18 18 O 1.21279 * 120.00520 * 180.02562 * 17 16 15 19 19 C 1.50704 * 119.99855 * 0.02654 * 17 16 15 20 20 S 1.80996 * 109.47245 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99895 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00334 * 359.97438 * 21 20 19 23 23 C 1.38799 * 120.00076 * 179.97438 * 21 20 19 24 24 N 1.31636 * 119.99701 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00315 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47188 * 59.99659 * 25 23 21 27 27 H 1.48502 * 109.47563 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47336 * 299.99970 * 25 23 21 29 29 H 1.09001 * 109.47393 * 299.21626 * 1 2 3 30 30 H 1.08995 * 109.47394 * 59.21527 * 1 2 3 31 31 H 1.09002 * 109.46997 * 179.21946 * 1 2 3 32 32 H 1.09003 * 111.00272 * 86.03394 * 4 2 1 33 33 H 1.08990 * 111.00537 * 322.17902 * 4 2 1 34 34 H 1.00899 * 110.99535 * 283.97967 * 7 5 4 35 35 H 1.09003 * 109.47302 * 59.99646 * 8 7 5 36 36 H 1.09002 * 109.47028 * 300.00208 * 8 7 5 37 37 H 1.07999 * 125.99346 * 179.97438 * 11 10 9 38 38 H 1.08001 * 126.59634 * 179.97438 * 12 11 10 39 39 H 1.08998 * 109.47117 * 90.00481 * 14 13 9 40 40 H 1.08998 * 109.46803 * 209.99712 * 14 13 9 41 41 H 1.08998 * 109.47357 * 330.00118 * 14 13 9 42 42 H 1.09000 * 109.88207 * 97.21971 * 15 5 4 43 43 H 1.09003 * 109.88012 * 218.23540 * 15 5 4 44 44 H 1.08999 * 109.47048 * 299.99989 * 19 17 16 45 45 H 1.08992 * 109.47492 * 59.99681 * 19 17 16 46 46 H 0.97000 * 119.99216 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0221 0.0000 4 6 2.0714 -0.7755 -1.2267 5 6 3.4803 -1.1970 -0.7318 6 1 4.1982 -0.3885 -0.8694 7 7 3.9313 -2.4130 -1.4217 8 6 5.3906 -2.5569 -1.3350 9 6 5.8150 -3.8128 -2.0517 10 7 5.9269 -4.9956 -1.5120 11 6 6.3313 -5.8709 -2.4444 12 6 6.4760 -5.2051 -3.6060 13 7 6.1480 -3.8995 -3.3576 14 6 6.1575 -2.8012 -4.3270 15 6 3.2508 -1.4739 0.7690 16 7 2.0431 -0.7372 1.1691 17 6 1.4952 -0.7365 2.4004 18 8 0.4929 -0.0893 2.6179 19 6 2.1282 -1.5400 3.5072 20 16 1.1664 -1.3360 5.0269 21 6 2.1024 -2.3526 6.1201 22 1 2.9813 -2.8667 5.7600 23 6 1.7102 -2.4928 7.4441 24 7 0.6387 -1.8666 7.8829 25 14 2.7021 -3.5710 8.6030 26 1 4.0913 -3.0539 8.6931 27 1 2.0785 -3.5539 9.9506 28 1 2.7247 -4.9631 8.0863 29 1 -0.3634 0.5016 0.8969 30 1 -0.3634 0.5259 -0.8828 31 1 -0.3633 -1.0276 -0.0140 32 1 2.1420 -0.1262 -2.0994 33 1 1.4550 -1.6486 -1.4402 34 1 3.4650 -3.2299 -1.0564 35 1 5.6882 -2.6182 -0.2882 36 1 5.8689 -1.6942 -1.7988 37 1 6.5104 -6.9247 -2.2905 38 1 6.7901 -5.6211 -4.5518 39 1 7.1397 -2.3285 -4.3309 40 1 5.9384 -3.1918 -5.3207 41 1 5.4016 -2.0661 -4.0507 42 1 3.1042 -2.5418 0.9308 43 1 4.1081 -1.1259 1.3454 44 1 2.1456 -2.5933 3.2273 45 1 3.1475 -1.1912 3.6723 46 1 0.3649 -1.9643 8.8083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278348665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:25 Heat of formation + Delta-G solvation = 38.022468 kcal Electronic energy + Delta-G solvation = -26481.221498 eV Core-core repulsion = 22726.432024 eV Total energy + Delta-G solvation = -3754.789475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.37156 -40.15713 -37.79631 -35.43071 -34.32034 -32.40489 -32.18882 -31.28268 -28.99765 -28.58456 -27.38295 -25.80449 -25.47403 -25.26019 -22.22349 -21.68409 -21.20874 -20.12075 -18.95573 -17.59508 -17.58725 -16.93030 -16.42901 -15.97054 -15.65427 -15.01170 -14.89524 -14.77847 -14.72040 -14.25598 -14.13790 -13.70150 -13.56585 -13.39526 -13.23551 -13.08277 -12.93279 -12.76839 -12.62215 -12.49526 -12.15108 -12.04442 -11.79694 -11.58447 -11.13070 -11.01657 -11.00768 -10.87667 -10.74074 -10.25750 -9.91855 -9.79800 -9.25119 -9.03390 -8.94878 -8.67740 -8.46944 -8.21981 -6.47898 -6.19227 -3.89775 1.66872 2.44139 2.79019 2.92339 3.08263 3.26018 3.27892 3.31304 3.59350 3.78265 4.11545 4.22740 4.29474 4.36034 4.40172 4.43844 4.67851 4.71173 4.87292 4.96233 5.00511 5.05077 5.10419 5.14558 5.15831 5.20202 5.37818 5.43988 5.46828 5.50652 5.65401 5.66693 5.73861 5.81124 5.91856 5.94780 6.15616 6.17137 6.34459 6.44451 6.48741 6.68801 6.81495 6.86813 7.61862 7.70156 7.81217 8.37650 8.60071 9.26061 10.88141 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010924 B = 0.002607 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.639854 B =10739.625107 C =13022.500777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 H 0.072 0.928 4 C -0.115 4.115 5 C 0.078 3.922 6 H 0.097 0.903 7 N -0.673 5.673 8 C 0.140 3.860 9 C 0.208 3.792 10 N -0.485 5.485 11 C -0.027 4.027 12 C -0.058 4.058 13 N -0.450 5.450 14 C 0.070 3.930 15 C 0.074 3.926 16 N -0.620 5.620 17 C 0.551 3.449 18 O -0.511 6.511 19 C -0.148 4.148 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.355 0.645 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.170 0.830 38 H 0.174 0.826 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.078 -0.480 -28.714 31.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 H 0.090 0.910 4 C -0.153 4.153 5 C -0.033 4.033 6 H 0.115 0.885 7 N -0.306 5.306 8 C 0.010 3.990 9 C -0.055 4.055 10 N -0.204 5.204 11 C -0.176 4.176 12 C -0.192 4.192 13 N -0.133 5.133 14 C -0.072 4.072 15 C -0.052 4.052 16 N -0.359 5.359 17 C 0.339 3.661 18 O -0.385 6.385 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.175 0.825 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.187 0.813 38 H 0.191 0.809 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.297 0.749 -28.060 29.899 hybrid contribution 2.298 -1.777 0.421 2.935 sum 12.595 -1.028 -27.639 30.391 Atomic orbital electron populations 1.22169 0.93692 1.02806 1.03628 1.21867 0.95609 0.95310 0.84055 0.90975 1.22864 0.94722 1.00720 0.97015 1.22661 0.97716 0.92876 0.90041 0.88494 1.60670 1.04367 1.05882 1.59649 1.20230 0.89101 0.90914 0.98750 1.23013 1.04562 0.96225 0.81660 1.70269 1.18767 0.99106 1.32284 1.22315 1.06123 0.99859 0.89274 1.22724 1.10744 0.83833 1.01886 1.45234 1.49578 1.08699 1.09740 1.22079 1.03774 0.89168 0.92196 1.22777 0.88596 0.97305 0.96478 1.48484 1.28167 1.49749 1.09471 1.19981 0.83672 0.81223 0.81191 1.90641 1.24410 1.42545 1.80899 1.23524 1.04453 1.01790 1.00065 1.85351 1.36235 1.64280 0.97421 1.22820 1.14775 1.33610 0.97112 0.91018 1.24987 0.95344 0.95946 0.97274 1.70013 1.23086 1.40629 1.16600 0.86230 0.79779 0.80369 0.79171 1.19935 1.20810 1.19897 0.89070 0.92437 0.92651 0.89724 0.90035 0.82507 0.91280 0.89368 0.81299 0.80914 0.90711 0.89697 0.88656 0.91261 0.91280 0.89460 0.89493 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 8.71 37.16 0.32 -1.81 16 2 C 0.14 1.57 3.76 -66.42 -0.25 1.32 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.11 -0.95 6.19 -24.58 -0.15 -1.11 16 5 C 0.08 0.61 3.24 -65.87 -0.21 0.39 16 6 H 0.10 0.63 7.89 -51.93 -0.41 0.22 16 7 N -0.67 -5.16 6.34 -106.05 -0.67 -5.83 16 8 C 0.14 1.05 5.63 -4.98 -0.03 1.03 16 9 C 0.21 2.00 7.41 -155.42 -1.15 0.85 16 10 N -0.49 -5.88 11.25 -10.82 -0.12 -6.00 16 11 C -0.03 -0.27 11.87 -17.81 -0.21 -0.48 16 12 C -0.06 -0.45 11.58 -16.56 -0.19 -0.64 16 13 N -0.45 -3.41 3.15 -121.28 -0.38 -3.79 16 14 C 0.07 0.26 10.79 59.85 0.65 0.91 16 15 C 0.07 0.81 6.14 -3.07 -0.02 0.79 16 16 N -0.62 -8.88 3.24 -163.05 -0.53 -9.41 16 17 C 0.55 10.65 7.65 -10.98 -0.08 10.57 16 18 O -0.51 -11.55 13.51 5.56 0.08 -11.48 16 19 C -0.15 -3.11 5.35 36.01 0.19 -2.91 16 20 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 21 C -0.53 -15.50 9.50 30.94 0.29 -15.21 16 22 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 25 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.09 1.49 5.89 -51.93 -0.31 1.19 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.74 8.06 -51.93 -0.42 0.33 16 34 H 0.35 3.23 8.15 -39.29 -0.32 2.91 16 35 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 36 H 0.09 0.48 7.66 -51.93 -0.40 0.08 16 37 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 40 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.09 0.33 7.67 -51.93 -0.40 -0.07 16 42 H 0.07 0.79 7.57 -51.93 -0.39 0.39 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 46 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -36.62 392.00 -10.43 -47.05 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.26 Total: 0.67 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -0.94 Total: -4.26 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.97 Total: -50.77 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.48 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.62 -10.43 -47.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278348665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.069 kcal (2) G-P(sol) polarization free energy of solvation -36.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds