Wall clock time and date at job start Tue Mar 31 2020 21:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.41062 * 2 1 4 4 C 1.54901 * 110.36927 * 122.29907 * 2 1 3 5 5 C 1.55157 * 101.58260 * 155.84994 * 4 2 1 6 6 H 1.08996 * 110.72695 * 82.85914 * 5 4 2 7 7 N 1.46905 * 110.71914 * 206.13854 * 5 4 2 8 8 C 1.46900 * 110.99475 * 204.99726 * 7 5 4 9 9 C 1.50707 * 109.46664 * 179.97438 * 8 7 5 10 10 N 1.30493 * 125.65084 * 90.02888 * 9 8 7 11 11 C 1.34132 * 109.25786 * 179.97438 * 10 9 8 12 12 C 1.34670 * 108.01618 * 359.97438 * 11 10 9 13 13 N 1.35046 * 125.64706 * 269.70947 * 9 8 7 14 14 C 1.46496 * 126.39844 * 0.02562 * 13 9 8 15 15 C 1.54330 * 102.94049 * 324.49554 * 5 4 2 16 16 N 1.47019 * 107.26866 * 22.19588 * 15 5 4 17 17 C 1.34773 * 125.64671 * 181.02357 * 16 15 5 18 18 O 1.21287 * 119.99994 * 180.02562 * 17 16 15 19 19 C 1.50706 * 120.00081 * 0.03963 * 17 16 15 20 20 S 1.81002 * 109.47026 * 180.02562 * 19 17 16 21 21 C 1.76206 * 99.99657 * 180.02562 * 20 19 17 22 22 H 1.07996 * 119.99921 * 359.97438 * 21 20 19 23 23 C 1.38798 * 119.99745 * 180.02562 * 21 20 19 24 24 N 1.31636 * 120.00304 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00145 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46526 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47343 * 119.99427 * 25 23 21 28 28 H 1.48504 * 109.46809 * 239.99944 * 25 23 21 29 29 H 1.09000 * 109.46951 * 297.70090 * 1 2 3 30 30 H 1.08997 * 109.47526 * 57.69996 * 1 2 3 31 31 H 1.09000 * 109.46984 * 177.70243 * 1 2 3 32 32 H 1.09002 * 111.00715 * 37.77156 * 4 2 1 33 33 H 1.09002 * 111.03940 * 273.93438 * 4 2 1 34 34 H 1.00900 * 110.99706 * 328.94497 * 7 5 4 35 35 H 1.09001 * 109.47604 * 299.99628 * 8 7 5 36 36 H 1.08998 * 109.47642 * 60.00138 * 8 7 5 37 37 H 1.07998 * 125.99003 * 179.97438 * 11 10 9 38 38 H 1.08001 * 126.58260 * 180.02562 * 12 11 10 39 39 H 1.09004 * 109.47158 * 89.98989 * 14 13 9 40 40 H 1.09000 * 109.47143 * 209.99020 * 14 13 9 41 41 H 1.08994 * 109.46972 * 329.99421 * 14 13 9 42 42 H 1.09000 * 109.88165 * 141.60879 * 15 5 4 43 43 H 1.08996 * 109.88261 * 262.77631 * 15 5 4 44 44 H 1.09003 * 109.47151 * 299.99803 * 19 17 16 45 45 H 1.09001 * 109.46890 * 60.00113 * 19 17 16 46 46 H 0.96992 * 120.00557 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0691 -0.7759 1.2275 5 6 3.4778 -1.1997 0.7340 6 1 4.1945 -0.3902 0.8719 7 7 3.9262 -2.4163 1.4246 8 6 5.3926 -2.5011 1.4425 9 6 5.8143 -3.7587 2.1580 10 7 6.0082 -4.9224 1.6003 11 6 6.3755 -5.8072 2.5392 12 6 6.4110 -5.1672 3.7235 13 7 6.0598 -3.8665 3.4816 14 6 5.9653 -2.7926 4.4736 15 6 3.2493 -1.4767 -0.7670 16 7 2.0430 -0.7383 -1.1684 17 6 1.4971 -0.7361 -2.4006 18 8 0.4963 -0.0868 -2.6194 19 6 2.1300 -1.5408 -3.5066 20 16 1.1718 -1.3331 -5.0281 21 6 2.1071 -2.3518 -6.1200 22 1 2.9842 -2.8679 -5.7586 23 6 1.7171 -2.4899 -7.4449 24 7 0.6483 -1.8604 -7.8856 25 14 2.7082 -3.5704 -8.6025 26 1 3.8542 -4.1627 -7.8669 27 1 1.8428 -4.6562 -9.1288 28 1 3.2159 -2.7505 -9.7318 29 1 -0.3633 0.4777 0.9099 30 1 -0.3634 0.5491 -0.8686 31 1 -0.3633 -1.0268 -0.0412 32 1 1.4511 -1.6481 1.4407 33 1 2.1399 -0.1270 2.1004 34 1 3.5500 -2.4606 2.3598 35 1 5.7680 -2.5216 0.4194 36 1 5.8005 -1.6339 1.9619 37 1 6.6028 -6.8500 2.3742 38 1 6.6706 -5.5968 4.6798 39 1 4.9555 -2.7642 4.8831 40 1 6.6782 -2.9766 5.2773 41 1 6.1916 -1.8382 3.9984 42 1 4.1063 -1.1278 -1.3430 43 1 3.1013 -2.5444 -0.9285 44 1 3.1504 -1.1941 -3.6701 45 1 2.1445 -2.5942 -3.2269 46 1 0.3756 -1.9573 -8.8113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278348667.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:27 Heat of formation + Delta-G solvation = 41.101196 kcal Electronic energy + Delta-G solvation = -26448.209947 eV Core-core repulsion = 22693.553976 eV Total energy + Delta-G solvation = -3754.655971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.40292 -40.08075 -37.74518 -35.48609 -34.37566 -32.36502 -32.16112 -31.28005 -29.05620 -28.53476 -27.48004 -25.82062 -25.45354 -25.34598 -22.09701 -21.71870 -21.12268 -20.16585 -18.86571 -17.56688 -17.47880 -16.98347 -16.43927 -16.23781 -15.45509 -15.16248 -14.95747 -14.87277 -14.74164 -14.23410 -14.01414 -13.88694 -13.58771 -13.40853 -13.26268 -13.13781 -12.85020 -12.73146 -12.62727 -12.48914 -12.16713 -11.90028 -11.76725 -11.46353 -11.11416 -11.01251 -10.96578 -10.88629 -10.69029 -10.20538 -9.94924 -9.73489 -9.17612 -9.01073 -8.94042 -8.71711 -8.41073 -8.16093 -6.43121 -6.15617 -3.85423 1.63072 2.34892 2.79629 2.97749 3.14904 3.26956 3.31485 3.36936 3.61854 3.81439 4.01572 4.15625 4.23821 4.26909 4.34087 4.44100 4.51125 4.68996 4.77843 4.84124 4.98658 5.07968 5.13806 5.18875 5.19661 5.21317 5.39098 5.44796 5.46950 5.59698 5.67567 5.70786 5.73745 5.81915 5.88040 6.00069 6.16661 6.25039 6.37362 6.43830 6.50843 6.69592 6.80372 6.83546 7.66909 7.77049 7.84114 8.42497 8.66030 9.30116 10.91897 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.002572 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.430082 B =10881.803118 C =13140.120664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.072 0.928 4 C -0.132 4.132 5 C 0.076 3.924 6 H 0.066 0.934 7 N -0.668 5.668 8 C 0.146 3.854 9 C 0.207 3.793 10 N -0.468 5.468 11 C -0.026 4.026 12 C -0.059 4.059 13 N -0.461 5.461 14 C 0.069 3.931 15 C 0.111 3.889 16 N -0.622 5.622 17 C 0.552 3.448 18 O -0.514 6.514 19 C -0.147 4.147 20 S -0.062 6.062 21 C -0.532 4.532 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.869 5.869 25 Si 0.918 3.082 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.343 0.657 35 H 0.108 0.892 36 H 0.046 0.954 37 H 0.170 0.830 38 H 0.174 0.826 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.885 0.209 30.414 32.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 H 0.090 0.910 4 C -0.171 4.171 5 C -0.034 4.034 6 H 0.084 0.916 7 N -0.301 5.301 8 C 0.015 3.985 9 C -0.056 4.056 10 N -0.187 5.187 11 C -0.175 4.175 12 C -0.192 4.192 13 N -0.145 5.145 14 C -0.074 4.074 15 C -0.014 4.014 16 N -0.360 5.360 17 C 0.341 3.659 18 O -0.388 6.388 19 C -0.297 4.297 20 S 0.164 5.836 21 C -0.680 4.680 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.162 0.838 35 H 0.126 0.874 36 H 0.064 0.936 37 H 0.188 0.812 38 H 0.191 0.809 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.091 0.759 28.561 30.301 hybrid contribution 2.287 -0.821 1.259 2.736 sum 12.378 -0.061 29.820 32.287 Atomic orbital electron populations 1.22133 0.93641 1.03130 1.03121 1.21734 0.95607 0.95069 0.83986 0.91039 1.23092 0.95367 1.01046 0.97545 1.22539 0.96305 0.90131 0.94404 0.91601 1.60295 1.07532 1.38952 1.23303 1.20276 0.88303 0.89000 1.00873 1.23037 1.05197 0.96919 0.80419 1.70291 1.16951 0.99018 1.32398 1.22382 1.06331 1.00053 0.88714 1.22706 1.10782 0.84112 1.01567 1.45342 1.51203 1.09460 1.08502 1.22059 1.03718 0.89676 0.91930 1.21984 0.87669 0.98219 0.93492 1.48530 1.28616 1.49612 1.09291 1.19964 0.83609 0.81192 0.81153 1.90649 1.24561 1.42606 1.80987 1.23521 1.04386 1.01969 0.99858 1.85336 1.36716 1.64066 0.97453 1.22911 1.14860 1.33238 0.96984 0.90856 1.24991 0.95364 0.95980 0.97301 1.70031 1.23328 1.40716 1.16348 0.86122 0.79675 0.79720 0.80041 1.19531 1.20587 1.20630 0.92593 0.89269 0.92466 0.89421 0.90172 0.83775 0.87405 0.93587 0.81229 0.80896 0.90404 0.89455 0.89621 0.91558 0.89738 0.89429 0.89221 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.59 37.16 0.32 -1.79 16 2 C 0.14 1.65 3.77 -66.42 -0.25 1.40 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.13 -1.06 5.88 -24.59 -0.14 -1.21 16 5 C 0.08 0.62 3.28 -65.87 -0.22 0.40 16 6 H 0.07 0.44 7.83 -51.93 -0.41 0.03 16 7 N -0.67 -5.30 6.31 -106.05 -0.67 -5.97 16 8 C 0.15 1.11 5.86 -4.97 -0.03 1.08 16 9 C 0.21 1.99 7.41 -155.42 -1.15 0.83 16 10 N -0.47 -5.89 11.25 -10.81 -0.12 -6.01 16 11 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 12 C -0.06 -0.43 11.58 -16.56 -0.19 -0.62 16 13 N -0.46 -3.24 3.15 -121.28 -0.38 -3.62 16 14 C 0.07 0.19 10.97 59.84 0.66 0.84 16 15 C 0.11 1.31 6.24 -3.06 -0.02 1.29 16 16 N -0.62 -9.21 3.24 -163.05 -0.53 -9.74 16 17 C 0.55 10.89 7.65 -10.98 -0.08 10.80 16 18 O -0.51 -11.75 13.58 5.55 0.08 -11.68 16 19 C -0.15 -3.15 5.35 36.01 0.19 -2.96 16 20 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 21 C -0.53 -15.55 9.50 30.94 0.29 -15.25 16 22 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.67 13.22 55.49 0.73 -25.94 16 25 Si 0.92 21.98 29.55 -169.99 -5.02 16.95 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.45 6.09 -51.93 -0.32 1.14 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.78 8.06 -51.93 -0.42 0.36 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.34 2.24 8.42 -39.29 -0.33 1.91 16 35 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.23 7.00 -51.93 -0.36 -0.13 16 37 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.17 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 40 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.09 0.14 7.04 -51.93 -0.37 -0.22 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 44 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 45 H 0.09 1.85 8.14 -51.92 -0.42 1.42 16 46 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -37.80 391.76 -10.39 -48.19 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.24 Total: -0.50 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -0.93 Total: -3.63 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.97 Total: -51.28 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.68 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.80 -10.39 -48.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278348667.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.290 kcal (2) G-P(sol) polarization free energy of solvation -37.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds