Wall clock time and date at job start Tue Mar 31 2020 21:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 110.41062 * 2 1 4 4 C 1.54901 * 110.36927 * 122.29907 * 2 1 3 5 5 C 1.55157 * 101.58260 * 155.84994 * 4 2 1 6 6 H 1.08996 * 110.72695 * 82.85914 * 5 4 2 7 7 N 1.46905 * 110.71914 * 206.13854 * 5 4 2 8 8 C 1.46900 * 110.99475 * 204.99726 * 7 5 4 9 9 C 1.50707 * 109.46664 * 179.97438 * 8 7 5 10 10 N 1.30493 * 125.65084 * 90.02888 * 9 8 7 11 11 C 1.34132 * 109.25786 * 179.97438 * 10 9 8 12 12 C 1.34670 * 108.01618 * 359.97438 * 11 10 9 13 13 N 1.35046 * 125.64706 * 269.70947 * 9 8 7 14 14 C 1.46496 * 126.39844 * 0.02562 * 13 9 8 15 15 C 1.54330 * 102.94049 * 324.49554 * 5 4 2 16 16 N 1.47019 * 107.26866 * 22.19588 * 15 5 4 17 17 C 1.34773 * 125.64671 * 181.02357 * 16 15 5 18 18 O 1.21287 * 119.99994 * 180.02562 * 17 16 15 19 19 C 1.50706 * 120.00081 * 0.03963 * 17 16 15 20 20 S 1.81002 * 109.47026 * 180.02562 * 19 17 16 21 21 C 1.76206 * 99.99657 * 180.02562 * 20 19 17 22 22 H 1.07996 * 119.99921 * 359.97438 * 21 20 19 23 23 C 1.38798 * 119.99745 * 180.02562 * 21 20 19 24 24 N 1.31636 * 120.00304 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00145 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46526 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47343 * 119.99427 * 25 23 21 28 28 H 1.48504 * 109.46809 * 239.99944 * 25 23 21 29 29 H 1.09000 * 109.46951 * 297.70090 * 1 2 3 30 30 H 1.08997 * 109.47526 * 57.69996 * 1 2 3 31 31 H 1.09000 * 109.46984 * 177.70243 * 1 2 3 32 32 H 1.09002 * 111.00715 * 37.77156 * 4 2 1 33 33 H 1.09002 * 111.03940 * 273.93438 * 4 2 1 34 34 H 1.00900 * 110.99706 * 328.94497 * 7 5 4 35 35 H 1.09001 * 109.47604 * 299.99628 * 8 7 5 36 36 H 1.08998 * 109.47642 * 60.00138 * 8 7 5 37 37 H 1.07998 * 125.99003 * 179.97438 * 11 10 9 38 38 H 1.08001 * 126.58260 * 180.02562 * 12 11 10 39 39 H 1.09004 * 109.47158 * 89.98989 * 14 13 9 40 40 H 1.09000 * 109.47143 * 209.99020 * 14 13 9 41 41 H 1.08994 * 109.46972 * 329.99421 * 14 13 9 42 42 H 1.09000 * 109.88165 * 141.60879 * 15 5 4 43 43 H 1.08996 * 109.88261 * 262.77631 * 15 5 4 44 44 H 1.09003 * 109.47151 * 299.99803 * 19 17 16 45 45 H 1.09001 * 109.46890 * 60.00113 * 19 17 16 46 46 H 0.96992 * 120.00557 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0691 -0.7759 1.2275 5 6 3.4778 -1.1997 0.7340 6 1 4.1945 -0.3902 0.8719 7 7 3.9262 -2.4163 1.4246 8 6 5.3926 -2.5011 1.4425 9 6 5.8143 -3.7587 2.1580 10 7 6.0082 -4.9224 1.6003 11 6 6.3755 -5.8072 2.5392 12 6 6.4110 -5.1672 3.7235 13 7 6.0598 -3.8665 3.4816 14 6 5.9653 -2.7926 4.4736 15 6 3.2493 -1.4767 -0.7670 16 7 2.0430 -0.7383 -1.1684 17 6 1.4971 -0.7361 -2.4006 18 8 0.4963 -0.0868 -2.6194 19 6 2.1300 -1.5408 -3.5066 20 16 1.1718 -1.3331 -5.0281 21 6 2.1071 -2.3518 -6.1200 22 1 2.9842 -2.8679 -5.7586 23 6 1.7171 -2.4899 -7.4449 24 7 0.6483 -1.8604 -7.8856 25 14 2.7082 -3.5704 -8.6025 26 1 3.8542 -4.1627 -7.8669 27 1 1.8428 -4.6562 -9.1288 28 1 3.2159 -2.7505 -9.7318 29 1 -0.3633 0.4777 0.9099 30 1 -0.3634 0.5491 -0.8686 31 1 -0.3633 -1.0268 -0.0412 32 1 1.4511 -1.6481 1.4407 33 1 2.1399 -0.1270 2.1004 34 1 3.5500 -2.4606 2.3598 35 1 5.7680 -2.5216 0.4194 36 1 5.8005 -1.6339 1.9619 37 1 6.6028 -6.8500 2.3742 38 1 6.6706 -5.5968 4.6798 39 1 4.9555 -2.7642 4.8831 40 1 6.6782 -2.9766 5.2773 41 1 6.1916 -1.8382 3.9984 42 1 4.1063 -1.1278 -1.3430 43 1 3.1013 -2.5444 -0.9285 44 1 3.1504 -1.1941 -3.6701 45 1 2.1445 -2.5942 -3.2269 46 1 0.3756 -1.9573 -8.8113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278348667.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:27 Heat of formation + Delta-G solvation = 13.940611 kcal Electronic energy + Delta-G solvation = -26449.387719 eV Core-core repulsion = 22693.553976 eV Total energy + Delta-G solvation = -3755.833742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.97273 -41.26050 -38.92272 -36.35101 -34.86356 -34.59932 -33.38024 -32.02814 -30.28665 -29.60534 -27.83538 -27.67789 -26.77223 -26.02821 -23.22071 -22.30072 -21.87922 -20.76278 -20.33661 -19.39347 -18.14646 -17.90949 -17.62213 -16.89868 -16.79533 -16.55628 -16.30619 -15.96923 -15.59910 -15.55903 -14.97548 -14.76449 -14.60428 -14.35159 -14.30939 -13.99657 -13.75160 -13.65071 -13.45834 -13.35164 -13.26809 -13.15439 -12.98488 -12.91381 -12.88214 -12.59425 -12.21457 -12.02236 -11.75121 -11.71658 -11.16718 -10.86886 -10.65488 -10.50475 -10.30378 -9.65965 -9.54165 -9.30770 -8.68451 -8.36075 -6.14223 1.07693 1.24059 1.40215 1.43746 1.56737 1.59507 1.92757 2.06086 2.19339 2.26363 2.97694 3.07696 3.27044 3.38818 3.54854 3.60327 3.90647 3.94632 3.99173 4.09360 4.17135 4.24119 4.28398 4.39297 4.40997 4.43435 4.47010 4.57157 4.63729 4.70545 4.73755 4.75386 4.80777 4.89485 4.89963 4.97037 5.22409 5.28719 5.34003 5.40658 5.60228 5.86029 5.90580 6.18901 6.30472 6.34310 6.43000 7.05129 7.17217 7.23220 8.73516 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.002572 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.430082 B =10881.803118 C =13140.120664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.130 3.870 3 H 0.087 0.913 4 C -0.115 4.115 5 C 0.093 3.907 6 H 0.095 0.905 7 N -0.680 5.680 8 C 0.150 3.850 9 C 0.193 3.807 10 N -0.526 5.526 11 C -0.067 4.067 12 C -0.043 4.043 13 N -0.456 5.456 14 C 0.060 3.940 15 C 0.100 3.900 16 N -0.613 5.613 17 C 0.548 3.452 18 O -0.555 6.555 19 C -0.122 4.122 20 S -0.144 6.144 21 C -0.546 4.546 22 H 0.078 0.922 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.999 3.001 26 H -0.260 1.260 27 H -0.272 1.272 28 H -0.271 1.271 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.080 0.920 33 H 0.123 0.877 34 H 0.356 0.644 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.174 0.826 38 H 0.208 0.792 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.106 0.500 33.765 36.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 H 0.105 0.895 4 C -0.153 4.153 5 C -0.017 4.017 6 H 0.113 0.887 7 N -0.314 5.314 8 C 0.020 3.980 9 C -0.070 4.070 10 N -0.246 5.246 11 C -0.214 4.214 12 C -0.178 4.178 13 N -0.139 5.139 14 C -0.081 4.081 15 C -0.024 4.024 16 N -0.349 5.349 17 C 0.336 3.664 18 O -0.433 6.433 19 C -0.273 4.273 20 S 0.083 5.917 21 C -0.694 4.694 22 H 0.096 0.904 23 C -0.191 4.191 24 N -0.546 5.546 25 Si 0.820 3.180 26 H -0.183 1.183 27 H -0.198 1.198 28 H -0.196 1.196 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.141 0.859 34 H 0.176 0.824 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.191 0.809 38 H 0.225 0.775 39 H 0.110 0.890 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.119 0.881 45 H 0.113 0.887 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.338 1.061 31.994 34.307 hybrid contribution 1.618 -0.912 0.385 1.897 sum 13.957 0.148 32.378 35.259 Atomic orbital electron populations 1.22050 0.94805 1.01682 1.03056 1.22104 0.94841 0.96210 0.84123 0.89521 1.23042 0.94493 1.00934 0.96827 1.22402 0.97131 0.90940 0.91237 0.88688 1.60099 1.08042 1.39074 1.24233 1.20262 0.88032 0.89479 1.00188 1.23268 1.05408 0.96697 0.81645 1.70191 1.18943 1.00854 1.34628 1.22686 1.08363 1.00642 0.89745 1.23193 1.08529 0.84108 1.01920 1.45576 1.49733 1.10197 1.08376 1.22424 1.05266 0.88880 0.91522 1.22264 0.86367 0.96751 0.96981 1.48473 1.28976 1.49006 1.08416 1.19604 0.83364 0.80980 0.82458 1.90645 1.26272 1.44396 1.82026 1.23324 1.03786 1.02912 0.97265 1.85442 1.39656 1.64756 1.01825 1.23205 1.15049 1.33485 0.97663 0.90372 1.26124 0.96477 0.97342 0.99123 1.70181 1.25149 1.42261 1.17056 0.84907 0.78100 0.77569 0.77385 1.18329 1.19759 1.19578 0.89075 0.93174 0.94226 0.90136 0.85911 0.82375 0.89269 0.90130 0.80872 0.77516 0.88959 0.87627 0.88166 0.90971 0.91624 0.88057 0.88652 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 8.59 71.98 0.62 -3.38 16 2 C 0.13 2.78 3.77 45.46 0.17 2.95 16 3 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 4 C -0.11 -1.38 5.88 31.98 0.19 -1.20 16 5 C 0.09 1.18 3.28 46.10 0.15 1.33 16 6 H 0.10 0.76 7.83 -2.39 -0.02 0.74 16 7 N -0.68 -8.81 6.31 -489.42 -3.09 -11.90 16 8 C 0.15 1.91 5.86 85.56 0.50 2.42 16 9 C 0.19 3.41 7.41 138.13 1.02 4.43 16 10 N -0.53 -13.33 11.25 -188.12 -2.12 -15.44 16 11 C -0.07 -1.32 11.87 83.52 0.99 -0.33 16 12 C -0.04 -0.55 11.58 83.09 0.96 0.42 16 13 N -0.46 -5.14 3.15 -537.62 -1.69 -6.83 16 14 C 0.06 0.06 10.97 127.77 1.40 1.47 16 15 C 0.10 2.22 6.24 86.73 0.54 2.76 16 16 N -0.61 -17.78 3.24 -788.17 -2.56 -20.33 16 17 C 0.55 22.24 7.65 87.66 0.67 22.91 16 18 O -0.56 -26.68 13.58 -3.05 -0.04 -26.73 16 19 C -0.12 -5.38 5.35 71.24 0.38 -5.00 16 20 S -0.14 -8.40 20.57 -56.49 -1.16 -9.57 16 21 C -0.55 -32.72 9.50 67.95 0.65 -32.07 16 22 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 23 C 0.01 0.83 5.49 84.86 0.47 1.30 16 24 N -0.91 -57.35 13.22 21.65 0.29 -57.06 16 25 Si 1.00 45.41 29.55 68.60 2.03 47.43 16 26 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.05 1.68 6.09 -2.39 -0.01 1.67 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.16 8.06 -2.39 -0.02 1.14 16 33 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.36 3.28 8.42 -89.69 -0.76 2.52 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 36 H 0.08 0.45 7.00 -2.39 -0.02 0.44 16 37 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 38 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.10 -0.16 7.04 -2.39 -0.02 -0.17 16 42 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 1.74 8.03 -2.39 -0.02 1.72 16 44 H 0.10 4.14 8.14 -2.39 -0.02 4.12 16 45 H 0.10 4.05 8.14 -2.39 -0.02 4.03 16 46 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -89.00 391.76 0.60 -88.40 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.23 Total: 14.02 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 8.71 Total: -2.00 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -9.17 Total: -111.57 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.04 Total: -26.73 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.57 kcal Total: -89.00 0.60 -88.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278348667.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.342 kcal (2) G-P(sol) polarization free energy of solvation -88.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds