Wall clock time and date at job start Tue Mar 31 2020 21:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.99883 * 2 1 4 4 C 1.54327 * 109.78079 * 121.16539 * 2 1 3 5 5 C 1.55156 * 103.02221 * 97.49705 * 4 2 1 6 6 H 1.08997 * 111.04030 * 277.22001 * 5 4 2 7 7 N 1.46899 * 111.00839 * 153.38068 * 5 4 2 8 8 C 1.46904 * 111.00241 * 161.35341 * 7 5 4 9 9 C 1.50702 * 109.47014 * 180.02562 * 8 7 5 10 10 N 1.30500 * 125.64910 * 90.02738 * 9 8 7 11 11 C 1.34127 * 109.25119 * 179.97438 * 10 9 8 12 12 C 1.34668 * 108.02633 * 359.97438 * 11 10 9 13 13 N 1.35040 * 125.64698 * 269.71552 * 9 8 7 14 14 C 1.46499 * 126.39796 * 0.02562 * 13 9 8 15 15 C 1.54918 * 101.58012 * 35.30827 * 5 4 2 16 16 N 1.47022 * 109.88477 * 238.90604 * 2 1 3 17 17 C 1.34780 * 125.64445 * 59.56136 * 16 2 1 18 18 O 1.21280 * 120.00423 * 359.71250 * 17 16 2 19 19 C 1.50701 * 119.99795 * 179.71926 * 17 16 2 20 20 S 1.81002 * 109.47156 * 179.97438 * 19 17 16 21 21 C 1.76193 * 100.00049 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00026 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00056 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00121 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99856 * 0.02562 * 23 21 20 26 26 H 1.48489 * 109.47437 * 89.99924 * 25 23 21 27 27 H 1.48500 * 109.46931 * 210.00082 * 25 23 21 28 28 H 1.48503 * 109.46655 * 329.99597 * 25 23 21 29 29 H 1.08995 * 109.47193 * 179.63716 * 1 2 3 30 30 H 1.09004 * 109.46931 * 299.64150 * 1 2 3 31 31 H 1.09006 * 109.47131 * 59.63903 * 1 2 3 32 32 H 1.09000 * 110.85610 * 339.03160 * 4 2 1 33 33 H 1.09003 * 110.67447 * 215.88000 * 4 2 1 34 34 H 1.00903 * 110.99869 * 37.39556 * 7 5 4 35 35 H 1.08998 * 109.46686 * 299.99957 * 8 7 5 36 36 H 1.08999 * 109.46824 * 59.99828 * 8 7 5 37 37 H 1.08006 * 125.98724 * 179.97438 * 11 10 9 38 38 H 1.07999 * 126.59522 * 180.02562 * 12 11 10 39 39 H 1.09000 * 109.46865 * 90.00531 * 14 13 9 40 40 H 1.09005 * 109.46991 * 209.99845 * 14 13 9 41 41 H 1.08991 * 109.47356 * 329.99884 * 14 13 9 42 42 H 1.09003 * 110.36670 * 204.15269 * 15 5 4 43 43 H 1.09001 * 110.46005 * 81.87572 * 15 5 4 44 44 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 45 45 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 46 46 H 0.96999 * 120.00138 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2426 5 6 2.3561 -2.1697 0.6914 6 1 1.4526 -2.7784 0.6578 7 7 3.4028 -2.8294 1.4833 8 6 3.3887 -4.2825 1.2682 9 6 4.4732 -4.9233 2.0955 10 7 4.3396 -5.3598 3.3180 11 6 5.5085 -5.8671 3.7367 12 6 6.4001 -5.7407 2.7355 13 7 5.7425 -5.1464 1.6923 14 6 6.3105 -4.8121 0.3840 15 6 2.8613 -1.8464 -0.7370 16 7 2.0300 -0.7140 -1.1839 17 6 1.7754 -0.3843 -2.4657 18 8 1.0746 0.5729 -2.7180 19 6 2.3613 -1.2051 -3.5855 20 16 1.8399 -0.5156 -5.1758 21 6 2.6434 -1.6356 -6.2731 22 1 3.2388 -2.4454 -5.8778 23 6 2.5121 -1.4767 -7.6458 24 7 3.1127 -2.3132 -8.4657 25 14 1.4840 -0.0750 -8.3296 26 1 2.3435 1.1203 -8.5238 27 1 0.8984 -0.4805 -9.6326 28 1 0.3928 0.2495 -7.3760 29 1 -0.3633 -1.0276 -0.0065 30 1 -0.3633 0.5083 0.8932 31 1 -0.3634 0.5195 -0.8868 32 1 1.2885 -0.7952 2.0191 33 1 2.9600 -0.2828 1.6225 34 1 3.3085 -2.6079 2.4632 35 1 2.4201 -4.6843 1.5654 36 1 3.5621 -4.4953 0.2133 37 1 5.7009 -6.3009 4.7069 38 1 7.4342 -6.0520 2.7510 39 1 6.7268 -3.8052 0.4151 40 1 7.0988 -5.5236 0.1376 41 1 5.5289 -4.8589 -0.3742 42 1 2.7178 -2.7048 -1.3934 43 1 3.9125 -1.5593 -0.7135 44 1 3.4491 -1.1855 -3.5197 45 1 2.0109 -2.2340 -3.5037 46 1 3.0207 -2.2024 -9.4249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278348669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:30 Heat of formation + Delta-G solvation = 35.373412 kcal Electronic energy + Delta-G solvation = -26624.309877 eV Core-core repulsion = 22869.405531 eV Total energy + Delta-G solvation = -3754.904346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.35794 -40.21658 -37.86331 -35.55094 -34.27785 -32.46817 -32.29862 -31.23101 -29.08968 -28.72130 -27.30858 -26.03658 -25.64084 -25.39361 -22.37404 -21.67269 -20.94171 -20.11126 -19.15635 -17.79012 -17.43317 -16.78667 -16.51629 -16.03165 -15.55400 -15.44084 -15.00853 -14.73789 -14.60513 -14.50559 -14.04314 -13.91846 -13.63586 -13.32008 -13.21378 -13.12954 -13.07827 -12.95977 -12.80028 -12.59664 -12.38752 -12.09324 -11.87573 -11.36538 -11.28173 -11.20647 -11.02949 -10.85369 -10.62232 -10.29178 -9.88730 -9.87599 -9.48959 -9.04827 -9.02572 -8.69350 -8.58780 -8.51671 -6.94262 -6.31528 -4.03124 1.69572 2.48319 2.64684 2.79637 2.94050 3.16009 3.31554 3.48874 3.55180 3.76515 4.04282 4.26588 4.30588 4.34047 4.41504 4.45825 4.68892 4.73748 4.78404 4.87606 4.98408 5.05872 5.07711 5.10793 5.15177 5.16366 5.23453 5.31604 5.39576 5.45931 5.51928 5.54916 5.62961 5.70781 5.75997 5.97014 5.98550 5.98655 6.21562 6.42286 6.44972 6.51696 6.81962 6.87440 7.58544 7.79663 7.91535 8.38356 8.44071 9.14855 10.77688 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012489 B = 0.002632 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.500726 B =10634.364842 C =12609.122836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 H 0.076 0.924 4 C -0.127 4.127 5 C 0.074 3.926 6 H 0.067 0.933 7 N -0.674 5.674 8 C 0.142 3.858 9 C 0.208 3.792 10 N -0.490 5.490 11 C -0.030 4.030 12 C -0.056 4.056 13 N -0.447 5.447 14 C 0.071 3.929 15 C 0.111 3.889 16 N -0.620 5.620 17 C 0.549 3.451 18 O -0.515 6.515 19 C -0.117 4.117 20 S -0.142 6.142 21 C -0.520 4.520 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.881 5.881 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.354 0.646 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.169 0.831 38 H 0.174 0.826 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.661 -4.943 24.658 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.036 3.964 3 H 0.094 0.906 4 C -0.165 4.165 5 C -0.037 4.037 6 H 0.085 0.915 7 N -0.307 5.307 8 C 0.012 3.988 9 C -0.055 4.055 10 N -0.209 5.209 11 C -0.179 4.179 12 C -0.190 4.190 13 N -0.129 5.129 14 C -0.071 4.071 15 C -0.013 4.013 16 N -0.358 5.358 17 C 0.337 3.663 18 O -0.389 6.389 19 C -0.268 4.268 20 S 0.085 5.915 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.174 0.826 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.186 0.814 38 H 0.191 0.809 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.476 -3.378 23.832 24.320 hybrid contribution 0.788 -1.137 -0.195 1.397 sum 4.264 -4.515 23.637 24.439 Atomic orbital electron populations 1.22171 0.94695 1.02283 1.03106 1.21424 0.94760 0.96361 0.83854 0.90583 1.22862 1.02228 0.94379 0.97025 1.22663 0.92600 0.94835 0.93600 0.91530 1.60355 1.49125 1.07194 1.14051 1.20230 0.93618 0.87138 0.97823 1.22959 0.85624 1.03958 0.92923 1.70223 1.26039 1.15719 1.08961 1.22272 0.89414 1.06050 1.00163 1.22747 1.00126 1.06973 0.89139 1.45255 1.10144 1.44382 1.13070 1.22106 1.00475 1.02712 0.81854 1.22262 0.95602 0.89410 0.94071 1.48483 1.51710 1.30767 1.04824 1.19942 0.80190 0.84705 0.81473 1.90690 1.37375 1.28303 1.82564 1.23261 1.03991 1.02384 0.97161 1.84802 1.68091 1.43054 0.95590 1.22297 1.35859 1.15815 0.92820 0.89446 1.24710 0.94722 0.96044 0.95821 1.69934 1.41938 1.36309 1.03553 0.86736 0.82425 0.82556 0.80160 1.19191 1.19940 1.15905 0.92652 0.91990 0.90630 0.89850 0.89586 0.82615 0.91566 0.89187 0.81374 0.80887 0.89872 0.89669 0.89162 0.90691 0.90291 0.88669 0.88713 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.05 37.15 0.34 -1.51 16 2 C 0.14 1.55 3.51 -66.95 -0.23 1.32 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.13 -0.97 5.95 -24.90 -0.15 -1.12 16 5 C 0.07 0.58 3.32 -65.56 -0.22 0.36 16 6 H 0.07 0.53 7.92 -51.93 -0.41 0.12 16 7 N -0.67 -4.96 6.36 -105.72 -0.67 -5.63 16 8 C 0.14 1.10 5.86 -4.97 -0.03 1.07 16 9 C 0.21 1.99 7.41 -155.42 -1.15 0.84 16 10 N -0.49 -5.53 11.25 -10.81 -0.12 -5.65 16 11 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16 12 C -0.06 -0.44 11.58 -16.56 -0.19 -0.63 16 13 N -0.45 -3.67 3.15 -121.28 -0.38 -4.05 16 14 C 0.07 0.39 10.97 59.85 0.66 1.05 16 15 C 0.11 1.12 6.34 -2.53 -0.02 1.10 16 16 N -0.62 -8.27 3.08 -163.01 -0.50 -8.78 16 17 C 0.55 9.86 7.65 -10.98 -0.08 9.77 16 18 O -0.52 -11.05 14.75 5.56 0.08 -10.96 16 19 C -0.12 -2.27 5.16 36.01 0.19 -2.08 16 20 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 21 C -0.52 -14.79 10.04 30.94 0.31 -14.48 16 22 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 23 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 24 N -0.88 -26.31 13.97 55.49 0.78 -25.54 16 25 Si 0.86 21.65 27.74 -169.99 -4.72 16.93 16 26 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.10 6.74 -51.93 -0.35 0.75 16 32 H 0.08 0.52 7.83 -51.93 -0.41 0.12 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.35 2.61 8.52 -39.29 -0.33 2.28 16 35 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 36 H 0.09 0.62 7.06 -51.93 -0.37 0.25 16 37 H 0.17 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.46 7.04 -51.93 -0.37 0.09 16 42 H 0.07 0.74 7.48 -51.93 -0.39 0.35 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 45 H 0.09 1.70 7.85 -51.91 -0.41 1.30 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 390.14 15.07 5.88 5.88 Total: -1.00 -35.39 390.14 -9.80 -45.19 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.26 Total: 0.31 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -0.89 Total: -2.14 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.90 Total: -49.64 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.72 Total: 16.93 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.39 -9.80 -45.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278348669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.559 kcal (2) G-P(sol) polarization free energy of solvation -35.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds