Wall clock time and date at job start Tue Mar 31 2020 21:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.99883 * 2 1 4 4 C 1.54327 * 109.78079 * 121.16539 * 2 1 3 5 5 C 1.55156 * 103.02221 * 97.49705 * 4 2 1 6 6 H 1.08997 * 111.04030 * 277.22001 * 5 4 2 7 7 N 1.46899 * 111.00839 * 153.38068 * 5 4 2 8 8 C 1.46904 * 111.00241 * 161.35341 * 7 5 4 9 9 C 1.50702 * 109.47014 * 180.02562 * 8 7 5 10 10 N 1.30500 * 125.64910 * 90.02738 * 9 8 7 11 11 C 1.34127 * 109.25119 * 179.97438 * 10 9 8 12 12 C 1.34668 * 108.02633 * 359.97438 * 11 10 9 13 13 N 1.35040 * 125.64698 * 269.71552 * 9 8 7 14 14 C 1.46499 * 126.39796 * 0.02562 * 13 9 8 15 15 C 1.54918 * 101.58012 * 35.30827 * 5 4 2 16 16 N 1.47022 * 109.88477 * 238.90604 * 2 1 3 17 17 C 1.34780 * 125.64445 * 59.56136 * 16 2 1 18 18 O 1.21280 * 120.00423 * 359.71250 * 17 16 2 19 19 C 1.50701 * 119.99795 * 179.71926 * 17 16 2 20 20 S 1.81002 * 109.47156 * 179.97438 * 19 17 16 21 21 C 1.76193 * 100.00049 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00026 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00056 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00121 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99856 * 0.02562 * 23 21 20 26 26 H 1.48489 * 109.47437 * 89.99924 * 25 23 21 27 27 H 1.48500 * 109.46931 * 210.00082 * 25 23 21 28 28 H 1.48503 * 109.46655 * 329.99597 * 25 23 21 29 29 H 1.08995 * 109.47193 * 179.63716 * 1 2 3 30 30 H 1.09004 * 109.46931 * 299.64150 * 1 2 3 31 31 H 1.09006 * 109.47131 * 59.63903 * 1 2 3 32 32 H 1.09000 * 110.85610 * 339.03160 * 4 2 1 33 33 H 1.09003 * 110.67447 * 215.88000 * 4 2 1 34 34 H 1.00903 * 110.99869 * 37.39556 * 7 5 4 35 35 H 1.08998 * 109.46686 * 299.99957 * 8 7 5 36 36 H 1.08999 * 109.46824 * 59.99828 * 8 7 5 37 37 H 1.08006 * 125.98724 * 179.97438 * 11 10 9 38 38 H 1.07999 * 126.59522 * 180.02562 * 12 11 10 39 39 H 1.09000 * 109.46865 * 90.00531 * 14 13 9 40 40 H 1.09005 * 109.46991 * 209.99845 * 14 13 9 41 41 H 1.08991 * 109.47356 * 329.99884 * 14 13 9 42 42 H 1.09003 * 110.36670 * 204.15269 * 15 5 4 43 43 H 1.09001 * 110.46005 * 81.87572 * 15 5 4 44 44 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 45 45 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 46 46 H 0.96999 * 120.00138 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0522 -0.7515 1.2426 5 6 2.3561 -2.1697 0.6914 6 1 1.4526 -2.7784 0.6578 7 7 3.4028 -2.8294 1.4833 8 6 3.3887 -4.2825 1.2682 9 6 4.4732 -4.9233 2.0955 10 7 4.3396 -5.3598 3.3180 11 6 5.5085 -5.8671 3.7367 12 6 6.4001 -5.7407 2.7355 13 7 5.7425 -5.1464 1.6923 14 6 6.3105 -4.8121 0.3840 15 6 2.8613 -1.8464 -0.7370 16 7 2.0300 -0.7140 -1.1839 17 6 1.7754 -0.3843 -2.4657 18 8 1.0746 0.5729 -2.7180 19 6 2.3613 -1.2051 -3.5855 20 16 1.8399 -0.5156 -5.1758 21 6 2.6434 -1.6356 -6.2731 22 1 3.2388 -2.4454 -5.8778 23 6 2.5121 -1.4767 -7.6458 24 7 3.1127 -2.3132 -8.4657 25 14 1.4840 -0.0750 -8.3296 26 1 2.3435 1.1203 -8.5238 27 1 0.8984 -0.4805 -9.6326 28 1 0.3928 0.2495 -7.3760 29 1 -0.3633 -1.0276 -0.0065 30 1 -0.3633 0.5083 0.8932 31 1 -0.3634 0.5195 -0.8868 32 1 1.2885 -0.7952 2.0191 33 1 2.9600 -0.2828 1.6225 34 1 3.3085 -2.6079 2.4632 35 1 2.4201 -4.6843 1.5654 36 1 3.5621 -4.4953 0.2133 37 1 5.7009 -6.3009 4.7069 38 1 7.4342 -6.0520 2.7510 39 1 6.7268 -3.8052 0.4151 40 1 7.0988 -5.5236 0.1376 41 1 5.5289 -4.8589 -0.3742 42 1 2.7178 -2.7048 -1.3934 43 1 3.9125 -1.5593 -0.7135 44 1 3.4491 -1.1855 -3.5197 45 1 2.0109 -2.2340 -3.5037 46 1 3.0207 -2.2024 -9.4249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278348669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:29 Heat of formation + Delta-G solvation = 11.192109 kcal Electronic energy + Delta-G solvation = -26625.358457 eV Core-core repulsion = 22869.405531 eV Total energy + Delta-G solvation = -3755.952926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.96890 -41.30410 -38.98730 -36.35985 -34.85707 -34.67668 -33.41977 -31.95356 -30.36506 -29.57295 -27.86058 -27.81333 -26.88261 -26.05168 -23.39032 -22.27777 -21.70527 -20.79281 -20.38251 -19.59590 -18.22787 -17.89120 -17.39555 -17.13476 -16.71609 -16.65185 -16.25772 -15.95646 -15.76276 -15.21378 -15.08974 -14.92039 -14.78117 -14.39850 -14.34696 -14.09896 -13.87504 -13.71267 -13.64498 -13.47591 -13.34728 -13.18192 -13.04304 -13.01602 -12.91271 -12.60254 -12.07159 -11.99687 -11.86965 -11.64520 -11.17599 -10.96405 -10.91680 -10.53753 -10.50738 -9.77508 -9.61212 -9.30274 -9.00925 -8.52166 -6.22841 0.95777 1.09299 1.30776 1.45032 1.52698 1.53543 1.94392 2.02353 2.15878 2.24482 2.67387 2.86258 3.06408 3.35153 3.51896 3.62773 3.83004 3.90804 4.00837 4.02200 4.16874 4.22701 4.29816 4.37289 4.39239 4.41273 4.46050 4.51259 4.61733 4.65204 4.72255 4.77987 4.85867 4.86730 4.91377 4.99243 5.08735 5.29496 5.39899 5.48005 5.70435 5.83074 5.88307 6.10788 6.22642 6.29439 6.38751 6.93316 7.08843 7.15923 8.60119 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012489 B = 0.002632 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.500726 B =10634.364842 C =12609.122836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.133 3.867 3 H 0.068 0.932 4 C -0.112 4.112 5 C 0.086 3.914 6 H 0.072 0.928 7 N -0.668 5.668 8 C 0.146 3.854 9 C 0.194 3.806 10 N -0.524 5.524 11 C -0.057 4.057 12 C -0.051 4.051 13 N -0.450 5.450 14 C 0.066 3.934 15 C 0.103 3.897 16 N -0.610 5.610 17 C 0.548 3.452 18 O -0.558 6.558 19 C -0.102 4.102 20 S -0.176 6.176 21 C -0.526 4.526 22 H 0.064 0.936 23 C 0.047 3.953 24 N -0.916 5.916 25 Si 0.912 3.088 26 H -0.262 1.262 27 H -0.259 1.259 28 H -0.238 1.238 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.037 0.963 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.357 0.643 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.182 0.818 38 H 0.203 0.797 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 -4.996 26.385 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.025 4.025 6 H 0.090 0.910 7 N -0.302 5.302 8 C 0.016 3.984 9 C -0.069 4.069 10 N -0.245 5.245 11 C -0.205 4.205 12 C -0.185 4.185 13 N -0.131 5.131 14 C -0.075 4.075 15 C -0.020 4.020 16 N -0.345 5.345 17 C 0.336 3.664 18 O -0.436 6.436 19 C -0.253 4.253 20 S 0.051 5.949 21 C -0.673 4.673 22 H 0.082 0.918 23 C -0.159 4.159 24 N -0.554 5.554 25 Si 0.734 3.266 26 H -0.187 1.187 27 H -0.183 1.183 28 H -0.162 1.162 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.057 0.943 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.177 0.823 35 H 0.083 0.917 36 H 0.116 0.884 37 H 0.199 0.801 38 H 0.220 0.780 39 H 0.105 0.895 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.917 -3.458 25.598 26.125 hybrid contribution 0.757 -1.206 -0.564 1.532 sum 4.674 -4.664 25.033 25.889 Atomic orbital electron populations 1.22118 0.94696 1.02322 1.02599 1.21672 0.94834 0.96420 0.84136 0.91362 1.22810 1.03199 0.93360 0.95619 1.22505 0.92685 0.95155 0.92141 0.91024 1.60286 1.48729 1.07016 1.14151 1.20233 0.93134 0.87065 0.97974 1.23202 0.86543 1.04306 0.92860 1.70169 1.27329 1.16866 1.10130 1.22671 0.89471 1.06943 1.01446 1.23244 1.01130 1.05677 0.88466 1.45471 1.09870 1.43890 1.13886 1.22289 1.01025 1.03434 0.80746 1.22515 0.95460 0.88348 0.95653 1.48418 1.50861 1.31335 1.03936 1.19609 0.80020 0.84095 0.82664 1.90677 1.39450 1.30040 1.83461 1.23211 1.04827 1.02927 0.94285 1.84744 1.68279 1.43099 0.98809 1.22426 1.35482 1.15669 0.93751 0.91813 1.25528 0.95819 0.98263 0.96257 1.70006 1.43319 1.37917 1.04171 0.85898 0.80976 0.79815 0.79897 1.18718 1.18334 1.16167 0.92241 0.89318 0.94341 0.87551 0.88666 0.82260 0.91719 0.88394 0.80082 0.77998 0.89538 0.87930 0.88844 0.90281 0.89642 0.87316 0.87264 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 9.05 71.98 0.65 -2.69 16 2 C 0.13 2.68 3.51 45.34 0.16 2.84 16 3 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 4 C -0.11 -1.34 5.95 31.78 0.19 -1.15 16 5 C 0.09 1.10 3.32 46.31 0.15 1.25 16 6 H 0.07 0.91 7.92 -2.39 -0.02 0.89 16 7 N -0.67 -8.11 6.36 -488.39 -3.11 -11.22 16 8 C 0.15 1.98 5.86 85.56 0.50 2.48 16 9 C 0.19 3.43 7.41 138.13 1.02 4.46 16 10 N -0.52 -11.39 11.25 -188.13 -2.12 -13.51 16 11 C -0.06 -1.01 11.87 83.52 0.99 -0.02 16 12 C -0.05 -0.70 11.58 83.09 0.96 0.26 16 13 N -0.45 -6.55 3.15 -537.62 -1.69 -8.25 16 14 C 0.07 0.58 10.97 127.77 1.40 1.99 16 15 C 0.10 1.84 6.34 86.86 0.55 2.39 16 16 N -0.61 -15.34 3.08 -788.04 -2.43 -17.77 16 17 C 0.55 19.39 7.65 87.66 0.67 20.06 16 18 O -0.56 -24.14 14.75 -3.03 -0.04 -24.18 16 19 C -0.10 -3.86 5.16 71.24 0.37 -3.49 16 20 S -0.18 -8.88 18.55 -56.49 -1.05 -9.93 16 21 C -0.53 -30.25 10.04 67.96 0.68 -29.57 16 22 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 23 C 0.05 2.72 5.50 84.86 0.47 3.19 16 24 N -0.92 -55.20 13.97 21.65 0.30 -54.90 16 25 Si 0.91 44.78 27.74 68.60 1.90 46.68 16 26 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 27 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 28 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.04 1.11 6.74 -2.38 -0.02 1.09 16 32 H 0.11 0.89 7.83 -2.39 -0.02 0.87 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.36 4.32 8.52 -89.69 -0.76 3.56 16 35 H 0.06 0.90 8.09 -2.39 -0.02 0.88 16 36 H 0.10 1.14 7.06 -2.39 -0.02 1.13 16 37 H 0.18 2.37 8.06 -2.91 -0.02 2.34 16 38 H 0.20 1.35 8.06 -2.91 -0.02 1.32 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.09 0.76 7.04 -2.39 -0.02 0.74 16 42 H 0.08 1.38 7.48 -2.39 -0.02 1.36 16 43 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.11 3.82 8.14 -2.39 -0.02 3.81 16 45 H 0.11 3.82 7.85 -2.40 -0.02 3.80 16 46 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -77.94 390.14 0.72 -77.22 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.18 Total: 13.85 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 8.77 Total: 1.99 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -9.04 Total: -105.64 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.04 Total: -24.18 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.90 Total: 46.68 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.05 Total: -9.93 kcal Total: -77.94 0.72 -77.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278348669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.410 kcal (2) G-P(sol) polarization free energy of solvation -77.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds