Wall clock time and date at job start Tue Mar 31 2020 21:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.86868 * 2 1 4 4 C 1.54317 * 109.88167 * 238.98315 * 2 1 3 5 5 C 1.55153 * 102.94534 * 262.77615 * 4 2 1 6 6 H 1.09000 * 111.00343 * 82.60988 * 5 4 2 7 7 N 1.46905 * 111.00673 * 206.42518 * 5 4 2 8 8 C 1.46895 * 111.00022 * 204.99896 * 7 5 4 9 9 C 1.50704 * 109.47207 * 179.97438 * 8 7 5 10 10 N 1.30494 * 125.64842 * 269.69186 * 9 8 7 11 11 C 1.34126 * 109.25549 * 180.26194 * 10 9 8 12 12 C 1.34666 * 108.02240 * 0.02562 * 11 10 9 13 13 N 1.35044 * 125.64872 * 89.99715 * 9 8 7 14 14 C 1.46500 * 126.39482 * 359.71828 * 13 9 8 15 15 C 1.54915 * 101.57995 * 324.49810 * 5 4 2 16 16 N 1.47020 * 109.88082 * 121.17565 * 2 1 3 17 17 C 1.34773 * 125.64878 * 300.42854 * 16 2 1 18 18 O 1.21278 * 120.00331 * 0.02562 * 17 16 2 19 19 C 1.50706 * 119.99992 * 180.02562 * 17 16 2 20 20 S 1.80995 * 109.47162 * 180.02562 * 19 17 16 21 21 C 1.76205 * 100.00040 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99881 * 359.97438 * 21 20 19 23 23 C 1.38802 * 120.00137 * 179.97438 * 21 20 19 24 24 N 1.31632 * 119.99832 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99993 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47188 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47224 * 119.99947 * 25 23 21 28 28 H 1.48498 * 109.46936 * 240.00215 * 25 23 21 29 29 H 1.09001 * 109.47247 * 181.01543 * 1 2 3 30 30 H 1.09002 * 109.47331 * 301.01391 * 1 2 3 31 31 H 1.08997 * 109.47604 * 61.01597 * 1 2 3 32 32 H 1.08999 * 110.72150 * 144.40797 * 4 2 1 33 33 H 1.09008 * 110.72183 * 21.13937 * 4 2 1 34 34 H 1.00897 * 110.99633 * 81.04427 * 7 5 4 35 35 H 1.09003 * 109.47302 * 59.99646 * 8 7 5 36 36 H 1.09002 * 109.47028 * 300.00208 * 8 7 5 37 37 H 1.07999 * 125.99346 * 179.97438 * 11 10 9 38 38 H 1.08001 * 126.59634 * 179.97438 * 12 11 10 39 39 H 1.09001 * 109.47489 * 90.00092 * 14 13 9 40 40 H 1.09003 * 109.46474 * 209.99914 * 14 13 9 41 41 H 1.09001 * 109.47124 * 329.99325 * 14 13 9 42 42 H 1.08994 * 110.36430 * 155.84619 * 15 5 4 43 43 H 1.08995 * 110.36464 * 278.17129 * 15 5 4 44 44 H 1.09000 * 109.46777 * 300.00006 * 19 17 16 45 45 H 1.08999 * 109.46888 * 59.99963 * 19 17 16 46 46 H 0.96992 * 119.99713 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 6 2.3518 -2.1685 -0.6954 6 1 1.4452 -2.7729 -0.6649 7 7 3.3965 -2.8310 -1.4878 8 6 3.2808 -4.2924 -1.3945 9 6 4.3661 -4.9359 -2.2186 10 7 4.2695 -5.2688 -3.4766 11 6 5.4242 -5.8206 -3.8781 12 6 6.2683 -5.8304 -2.8288 13 7 5.5978 -5.2688 -1.7759 14 6 6.1187 -5.0667 -0.4217 15 6 2.8568 -1.8508 0.7342 16 7 2.0300 -0.7157 1.1829 17 6 1.7755 -0.3878 2.4651 18 8 1.0788 0.5720 2.7188 19 6 2.3566 -1.2137 3.5837 20 16 1.8366 -0.5255 5.1749 21 6 2.6341 -1.6516 6.2707 22 1 3.2256 -2.4636 5.8741 23 6 2.5021 -1.4952 7.6435 24 7 1.7807 -0.5059 8.1269 25 14 3.3469 -2.6895 8.8051 26 1 4.0906 -3.7046 8.0166 27 1 4.2945 -1.9474 9.6749 28 1 2.3276 -3.3656 9.6472 29 1 -0.3634 -1.0275 0.0182 30 1 -0.3634 0.5295 0.8808 31 1 -0.3634 0.4979 -0.8989 32 1 2.9656 -0.2809 -1.6186 33 1 1.2917 -0.7862 -2.0212 34 1 4.3147 -2.5222 -1.2056 35 1 2.3064 -4.6045 -1.7703 36 1 3.3841 -4.5993 -0.3537 37 1 5.6392 -6.1926 -4.8689 38 1 7.2799 -6.2085 -2.8198 39 1 5.8993 -5.9441 0.1868 40 1 7.1974 -4.9159 -0.4662 41 1 5.6473 -4.1897 0.0219 42 1 2.7088 -2.7099 1.3884 43 1 3.9091 -1.5677 0.7106 44 1 2.0017 -2.2409 3.4992 45 1 3.4446 -1.1988 3.5190 46 1 1.6887 -0.3964 9.0862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278348671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:33 Heat of formation + Delta-G solvation = 36.397805 kcal Electronic energy + Delta-G solvation = -26591.754748 eV Core-core repulsion = 22836.894823 eV Total energy + Delta-G solvation = -3754.859925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.40062 -40.19927 -37.83829 -35.54808 -34.33800 -32.48369 -32.21674 -31.24791 -29.00019 -28.66314 -27.42926 -25.93456 -25.55196 -25.27122 -22.53477 -21.71683 -21.02527 -20.15802 -19.03567 -17.76611 -17.51435 -16.74988 -16.60817 -15.95113 -15.87220 -15.09863 -14.91099 -14.85596 -14.73466 -14.06704 -14.04127 -13.88572 -13.60671 -13.38844 -13.26501 -13.17967 -13.03380 -12.98935 -12.64744 -12.56443 -12.48158 -12.04574 -11.83497 -11.58736 -11.12273 -11.10581 -11.04526 -10.81114 -10.76085 -10.24693 -9.93833 -9.86228 -9.44120 -9.12704 -8.96947 -8.70577 -8.54746 -8.28294 -6.55650 -6.26990 -3.97830 1.64138 2.38392 2.75437 2.87424 3.01826 3.16653 3.20507 3.25793 3.51020 3.77364 4.05625 4.14473 4.22113 4.27251 4.39004 4.46920 4.63572 4.70027 4.80848 4.92936 4.96169 4.99802 5.06431 5.08191 5.11843 5.19186 5.28733 5.40265 5.46591 5.48002 5.55940 5.63358 5.73547 5.78094 5.82499 5.89818 6.04434 6.07707 6.29464 6.42991 6.45201 6.54382 6.80713 6.81250 7.53732 7.63269 7.81591 8.29496 8.52760 9.18205 10.80501 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010541 B = 0.002716 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.555435 B =10305.642620 C =12711.600487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 H 0.075 0.925 4 C -0.113 4.113 5 C 0.077 3.923 6 H 0.099 0.901 7 N -0.665 5.665 8 C 0.144 3.856 9 C 0.207 3.793 10 N -0.473 5.473 11 C -0.030 4.030 12 C -0.056 4.056 13 N -0.459 5.459 14 C 0.068 3.932 15 C 0.074 3.926 16 N -0.619 5.619 17 C 0.549 3.451 18 O -0.510 6.510 19 C -0.147 4.147 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.866 5.866 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.279 1.279 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.342 0.658 35 H 0.107 0.893 36 H 0.050 0.950 37 H 0.170 0.830 38 H 0.174 0.826 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.272 -9.457 -22.139 25.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.093 0.907 4 C -0.151 4.151 5 C -0.034 4.034 6 H 0.117 0.883 7 N -0.296 5.296 8 C 0.013 3.987 9 C -0.056 4.056 10 N -0.191 5.191 11 C -0.178 4.178 12 C -0.190 4.190 13 N -0.142 5.142 14 C -0.075 4.075 15 C -0.052 4.052 16 N -0.357 5.357 17 C 0.337 3.663 18 O -0.384 6.384 19 C -0.297 4.297 20 S 0.168 5.832 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.501 5.501 25 Si 0.745 3.255 26 H -0.197 1.197 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.161 0.839 35 H 0.125 0.875 36 H 0.068 0.932 37 H 0.187 0.813 38 H 0.191 0.809 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.159 -7.741 -22.437 24.520 hybrid contribution 2.723 -2.290 1.904 4.035 sum 8.882 -10.031 -20.533 24.517 Atomic orbital electron populations 1.22157 0.94652 1.02312 1.03038 1.21539 0.94930 0.96415 0.84034 0.90724 1.22702 1.02230 0.93742 0.96464 1.22820 0.95166 0.96048 0.89373 0.88288 1.60481 1.06989 1.04261 1.57882 1.20269 0.95911 0.86986 0.95500 1.23020 0.86555 1.04041 0.91954 1.70243 1.24669 1.15455 1.08765 1.22338 0.90502 1.05417 0.99553 1.22730 1.00467 1.07599 0.88168 1.45362 1.12492 1.45627 1.10718 1.22098 1.01274 1.03491 0.80602 1.23013 0.95257 0.90251 0.96643 1.48468 1.51804 1.30396 1.05008 1.20001 0.80122 0.84801 0.81364 1.90698 1.37221 1.28059 1.82411 1.23511 1.03557 1.02449 1.00216 1.85435 1.67120 1.40190 0.90502 1.22876 1.36541 1.15810 0.93100 0.91000 1.24998 0.95251 0.95993 0.97363 1.70024 1.37301 1.29248 1.13571 0.86117 0.79074 0.80173 0.80113 1.19689 1.20536 1.20517 0.92647 0.90735 0.91920 0.90196 0.89425 0.83880 0.87503 0.93208 0.81305 0.80883 0.90143 0.89232 0.89641 0.90556 0.91590 0.89535 0.89572 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.05 37.16 0.34 -1.62 16 2 C 0.13 1.57 3.49 -66.96 -0.23 1.34 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.11 -0.97 6.19 -24.90 -0.15 -1.12 16 5 C 0.08 0.62 3.38 -65.56 -0.22 0.40 16 6 H 0.10 0.80 7.83 -51.93 -0.41 0.40 16 7 N -0.66 -5.06 6.40 -105.72 -0.68 -5.74 16 8 C 0.14 1.10 5.63 -4.98 -0.03 1.07 16 9 C 0.21 1.97 7.42 -155.42 -1.15 0.81 16 10 N -0.47 -5.54 11.25 -10.82 -0.12 -5.67 16 11 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16 12 C -0.06 -0.42 11.58 -16.56 -0.19 -0.61 16 13 N -0.46 -3.48 3.15 -121.28 -0.38 -3.86 16 14 C 0.07 0.29 10.79 59.85 0.65 0.94 16 15 C 0.07 0.72 6.29 -2.53 -0.02 0.71 16 16 N -0.62 -8.49 3.08 -163.02 -0.50 -8.99 16 17 C 0.55 10.27 7.65 -10.98 -0.08 10.19 16 18 O -0.51 -11.50 14.77 5.56 0.08 -11.42 16 19 C -0.15 -2.92 5.16 36.01 0.19 -2.74 16 20 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 21 C -0.54 -14.95 9.50 30.94 0.29 -14.66 16 22 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 23 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.81 13.22 55.49 0.73 -25.08 16 25 Si 0.92 20.99 29.55 -169.99 -5.02 15.96 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.14 6.77 -51.93 -0.35 0.79 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.69 7.83 -51.92 -0.41 0.28 16 34 H 0.34 2.38 8.18 -39.29 -0.32 2.06 16 35 H 0.11 0.86 8.09 -51.93 -0.42 0.44 16 36 H 0.05 0.31 7.72 -51.93 -0.40 -0.09 16 37 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 0.31 7.67 -51.93 -0.40 -0.09 16 42 H 0.08 0.72 7.48 -51.93 -0.39 0.34 16 43 H 0.07 0.57 7.75 -51.93 -0.40 0.17 16 44 H 0.09 1.59 7.85 -51.92 -0.41 1.19 16 45 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 46 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 393.19 15.07 5.93 5.93 Total: -1.00 -36.35 393.19 -10.36 -46.71 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -7.25 Total: -0.23 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -0.93 Total: -3.82 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.95 Total: -49.33 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.42 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.35 -10.36 -46.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278348671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.106 kcal (2) G-P(sol) polarization free energy of solvation -36.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds