Wall clock time and date at job start Tue Mar 31 2020 21:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.86868 * 2 1 4 4 C 1.54317 * 109.88167 * 238.98315 * 2 1 3 5 5 C 1.55153 * 102.94534 * 262.77615 * 4 2 1 6 6 H 1.09000 * 111.00343 * 82.60988 * 5 4 2 7 7 N 1.46905 * 111.00673 * 206.42518 * 5 4 2 8 8 C 1.46895 * 111.00022 * 204.99896 * 7 5 4 9 9 C 1.50704 * 109.47207 * 179.97438 * 8 7 5 10 10 N 1.30494 * 125.64842 * 269.69186 * 9 8 7 11 11 C 1.34126 * 109.25549 * 180.26194 * 10 9 8 12 12 C 1.34666 * 108.02240 * 0.02562 * 11 10 9 13 13 N 1.35044 * 125.64872 * 89.99715 * 9 8 7 14 14 C 1.46500 * 126.39482 * 359.71828 * 13 9 8 15 15 C 1.54915 * 101.57995 * 324.49810 * 5 4 2 16 16 N 1.47020 * 109.88082 * 121.17565 * 2 1 3 17 17 C 1.34773 * 125.64878 * 300.42854 * 16 2 1 18 18 O 1.21278 * 120.00331 * 0.02562 * 17 16 2 19 19 C 1.50706 * 119.99992 * 180.02562 * 17 16 2 20 20 S 1.80995 * 109.47162 * 180.02562 * 19 17 16 21 21 C 1.76205 * 100.00040 * 179.97438 * 20 19 17 22 22 H 1.08005 * 119.99881 * 359.97438 * 21 20 19 23 23 C 1.38802 * 120.00137 * 179.97438 * 21 20 19 24 24 N 1.31632 * 119.99832 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99993 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47188 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47224 * 119.99947 * 25 23 21 28 28 H 1.48498 * 109.46936 * 240.00215 * 25 23 21 29 29 H 1.09001 * 109.47247 * 181.01543 * 1 2 3 30 30 H 1.09002 * 109.47331 * 301.01391 * 1 2 3 31 31 H 1.08997 * 109.47604 * 61.01597 * 1 2 3 32 32 H 1.08999 * 110.72150 * 144.40797 * 4 2 1 33 33 H 1.09008 * 110.72183 * 21.13937 * 4 2 1 34 34 H 1.00897 * 110.99633 * 81.04427 * 7 5 4 35 35 H 1.09003 * 109.47302 * 59.99646 * 8 7 5 36 36 H 1.09002 * 109.47028 * 300.00208 * 8 7 5 37 37 H 1.07999 * 125.99346 * 179.97438 * 11 10 9 38 38 H 1.08001 * 126.59634 * 179.97438 * 12 11 10 39 39 H 1.09001 * 109.47489 * 90.00092 * 14 13 9 40 40 H 1.09003 * 109.46474 * 209.99914 * 14 13 9 41 41 H 1.09001 * 109.47124 * 329.99325 * 14 13 9 42 42 H 1.08994 * 110.36430 * 155.84619 * 15 5 4 43 43 H 1.08995 * 110.36464 * 278.17129 * 15 5 4 44 44 H 1.09000 * 109.46777 * 300.00006 * 19 17 16 45 45 H 1.08999 * 109.46888 * 59.99963 * 19 17 16 46 46 H 0.96992 * 119.99713 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 6 2.3518 -2.1685 -0.6954 6 1 1.4452 -2.7729 -0.6649 7 7 3.3965 -2.8310 -1.4878 8 6 3.2808 -4.2924 -1.3945 9 6 4.3661 -4.9359 -2.2186 10 7 4.2695 -5.2688 -3.4766 11 6 5.4242 -5.8206 -3.8781 12 6 6.2683 -5.8304 -2.8288 13 7 5.5978 -5.2688 -1.7759 14 6 6.1187 -5.0667 -0.4217 15 6 2.8568 -1.8508 0.7342 16 7 2.0300 -0.7157 1.1829 17 6 1.7755 -0.3878 2.4651 18 8 1.0788 0.5720 2.7188 19 6 2.3566 -1.2137 3.5837 20 16 1.8366 -0.5255 5.1749 21 6 2.6341 -1.6516 6.2707 22 1 3.2256 -2.4636 5.8741 23 6 2.5021 -1.4952 7.6435 24 7 1.7807 -0.5059 8.1269 25 14 3.3469 -2.6895 8.8051 26 1 4.0906 -3.7046 8.0166 27 1 4.2945 -1.9474 9.6749 28 1 2.3276 -3.3656 9.6472 29 1 -0.3634 -1.0275 0.0182 30 1 -0.3634 0.5295 0.8808 31 1 -0.3634 0.4979 -0.8989 32 1 2.9656 -0.2809 -1.6186 33 1 1.2917 -0.7862 -2.0212 34 1 4.3147 -2.5222 -1.2056 35 1 2.3064 -4.6045 -1.7703 36 1 3.3841 -4.5993 -0.3537 37 1 5.6392 -6.1926 -4.8689 38 1 7.2799 -6.2085 -2.8198 39 1 5.8993 -5.9441 0.1868 40 1 7.1974 -4.9159 -0.4662 41 1 5.6473 -4.1897 0.0219 42 1 2.7088 -2.7099 1.3884 43 1 3.9091 -1.5677 0.7106 44 1 2.0017 -2.2409 3.4992 45 1 3.4446 -1.1988 3.5190 46 1 1.6887 -0.3964 9.0862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278348671.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:32 Heat of formation + Delta-G solvation = 11.245199 kcal Electronic energy + Delta-G solvation = -26592.845447 eV Core-core repulsion = 22836.894823 eV Total energy + Delta-G solvation = -3755.950624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.97964 -41.30740 -39.00653 -36.37977 -34.86710 -34.59714 -33.38761 -31.97135 -30.28530 -29.54797 -27.86667 -27.67833 -26.80134 -25.93580 -23.53668 -22.30949 -21.83658 -20.77005 -20.35167 -19.56147 -18.18856 -17.90769 -17.36590 -16.95024 -16.88709 -16.64356 -16.25335 -15.92407 -15.67902 -15.42959 -14.84128 -14.63060 -14.48224 -14.35235 -14.26821 -14.17709 -13.88245 -13.67991 -13.60683 -13.50138 -13.19108 -13.16345 -13.06835 -12.96993 -12.92214 -12.58038 -12.36428 -11.93317 -11.72171 -11.59114 -11.17110 -10.90267 -10.89368 -10.51806 -10.28265 -9.78053 -9.54597 -9.28497 -8.69086 -8.35828 -6.14403 1.07144 1.23079 1.40842 1.44429 1.55590 1.57248 1.90696 2.03665 2.17928 2.25913 2.98619 3.04572 3.26947 3.42911 3.53262 3.64347 3.88315 3.89307 4.00752 4.04923 4.10838 4.22462 4.26804 4.31743 4.38499 4.38654 4.44088 4.55156 4.62705 4.64700 4.69209 4.70944 4.77153 4.88493 4.97226 5.05239 5.14075 5.31964 5.34608 5.40455 5.50341 5.83789 5.86989 6.18617 6.24976 6.28013 6.40291 7.05402 7.13573 7.20513 8.73686 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010541 B = 0.002716 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.555435 B =10305.642620 C =12711.600487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 H 0.064 0.936 4 C -0.100 4.100 5 C 0.091 3.909 6 H 0.103 0.897 7 N -0.664 5.664 8 C 0.148 3.852 9 C 0.192 3.808 10 N -0.517 5.517 11 C -0.061 4.061 12 C -0.048 4.048 13 N -0.458 5.458 14 C 0.061 3.939 15 C 0.067 3.933 16 N -0.609 5.609 17 C 0.546 3.454 18 O -0.561 6.561 19 C -0.119 4.119 20 S -0.153 6.153 21 C -0.542 4.542 22 H 0.084 0.916 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 1.000 3.000 26 H -0.254 1.254 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.060 0.940 30 H 0.034 0.966 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.348 0.652 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.180 0.820 38 H 0.205 0.795 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.528 -11.704 -23.128 27.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 H 0.082 0.918 4 C -0.139 4.139 5 C -0.020 4.020 6 H 0.121 0.879 7 N -0.296 5.296 8 C 0.017 3.983 9 C -0.070 4.070 10 N -0.237 5.237 11 C -0.209 4.209 12 C -0.181 4.181 13 N -0.140 5.140 14 C -0.080 4.080 15 C -0.057 4.057 16 N -0.345 5.345 17 C 0.334 3.666 18 O -0.439 6.439 19 C -0.270 4.270 20 S 0.075 5.925 21 C -0.690 4.690 22 H 0.102 0.898 23 C -0.193 4.193 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.177 1.177 27 H -0.200 1.200 28 H -0.201 1.201 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.168 0.832 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.197 0.803 38 H 0.222 0.778 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.448 -10.017 -23.476 26.886 hybrid contribution 2.057 -1.605 2.046 3.315 sum 10.505 -11.622 -21.430 26.546 Atomic orbital electron populations 1.22107 0.94907 1.02319 1.02370 1.21736 0.94810 0.96392 0.84434 0.91758 1.22638 1.02864 0.93464 0.94886 1.22673 0.95442 0.95805 0.88081 0.87919 1.60429 1.07191 1.04395 1.57550 1.20259 0.95151 0.86701 0.96146 1.23236 0.87625 1.04433 0.91747 1.70171 1.26231 1.16945 1.10350 1.22706 0.90662 1.06553 1.00941 1.23224 1.01300 1.06127 0.87494 1.45568 1.11911 1.44756 1.11789 1.22361 1.02391 1.04263 0.79026 1.23363 0.95634 0.88988 0.97758 1.48384 1.51054 1.31161 1.03852 1.19773 0.79909 0.84179 0.82763 1.90684 1.39593 1.30138 1.83470 1.23301 1.04504 1.02816 0.96344 1.85657 1.68537 1.42474 0.95881 1.23202 1.36432 1.15822 0.93566 0.89813 1.26151 0.95831 0.97907 0.99377 1.70194 1.39074 1.31500 1.14069 0.84894 0.77878 0.77695 0.77406 1.17740 1.20017 1.20062 0.92118 0.94669 0.89425 0.89317 0.88067 0.83168 0.88209 0.91397 0.80294 0.77826 0.89369 0.87505 0.88784 0.89723 0.89711 0.87659 0.87666 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 9.05 71.98 0.65 -3.06 16 2 C 0.13 2.86 3.49 45.34 0.16 3.01 16 3 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.10 -1.43 6.19 31.78 0.20 -1.23 16 5 C 0.09 1.19 3.38 46.31 0.16 1.34 16 6 H 0.10 1.34 7.83 -2.39 -0.02 1.32 16 7 N -0.66 -8.11 6.40 -488.39 -3.13 -11.24 16 8 C 0.15 1.89 5.63 85.56 0.48 2.38 16 9 C 0.19 3.31 7.42 138.13 1.02 4.33 16 10 N -0.52 -11.71 11.25 -188.13 -2.12 -13.83 16 11 C -0.06 -1.08 11.87 83.52 0.99 -0.09 16 12 C -0.05 -0.60 11.58 83.09 0.96 0.36 16 13 N -0.46 -5.77 3.15 -537.60 -1.69 -7.46 16 14 C 0.06 0.32 10.79 127.77 1.38 1.70 16 15 C 0.07 1.09 6.29 86.86 0.55 1.64 16 16 N -0.61 -15.84 3.08 -788.07 -2.43 -18.27 16 17 C 0.55 20.42 7.65 87.66 0.67 21.09 16 18 O -0.56 -26.29 14.77 -3.02 -0.04 -26.34 16 19 C -0.12 -4.64 5.16 71.24 0.37 -4.27 16 20 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 21 C -0.54 -30.31 9.50 67.96 0.65 -29.66 16 22 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 23 C 0.01 0.67 5.49 84.86 0.47 1.14 16 24 N -0.91 -55.51 13.22 21.65 0.29 -55.23 16 25 Si 1.00 42.54 29.55 68.60 2.03 44.57 16 26 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 28 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.03 1.11 6.77 -2.39 -0.02 1.09 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.10 1.26 7.83 -2.38 -0.02 1.24 16 34 H 0.35 3.64 8.18 -89.70 -0.73 2.91 16 35 H 0.10 1.43 8.09 -2.39 -0.02 1.41 16 36 H 0.07 0.62 7.72 -2.39 -0.02 0.60 16 37 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.09 0.34 7.67 -2.39 -0.02 0.32 16 42 H 0.08 1.30 7.48 -2.39 -0.02 1.28 16 43 H 0.08 1.14 7.75 -2.39 -0.02 1.12 16 44 H 0.11 3.70 7.85 -2.40 -0.02 3.68 16 45 H 0.11 3.69 8.14 -2.40 -0.02 3.67 16 46 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -83.01 393.19 0.69 -82.33 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.25 Total: 16.36 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: 8.70 Total: -1.32 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -9.08 Total: -106.03 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.04 Total: -26.34 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -83.01 0.69 -82.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278348671.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.573 kcal (2) G-P(sol) polarization free energy of solvation -83.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds