Wall clock time and date at job start Tue Mar 31 2020 21:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.69778 * 2 1 4 4 C 1.53189 * 109.58635 * 239.64200 * 2 1 3 5 5 C 1.53041 * 109.31253 * 294.84593 * 4 2 1 6 6 H 1.09004 * 109.46289 * 58.66071 * 5 4 2 7 7 N 1.46503 * 109.45838 * 178.62916 * 5 4 2 8 8 C 1.34780 * 119.99990 * 205.02453 * 7 5 4 9 9 O 1.21282 * 119.99983 * 0.02562 * 8 7 5 10 10 C 1.50694 * 120.00143 * 180.02562 * 8 7 5 11 11 C 1.52997 * 109.47270 * 180.02562 * 10 8 7 12 12 O 1.42904 * 109.47038 * 179.97438 * 11 10 8 13 13 C 1.42898 * 113.99778 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47245 * 179.97438 * 13 12 11 15 15 F 1.39907 * 109.46590 * 60.00140 * 14 13 12 16 16 F 1.39897 * 109.47626 * 180.02562 * 14 13 12 17 17 F 1.39899 * 109.47175 * 300.00799 * 14 13 12 18 18 C 1.53044 * 109.53902 * 298.63573 * 5 4 2 19 19 C 1.53188 * 109.30959 * 61.36502 * 18 5 4 20 20 N 1.46917 * 108.78008 * 305.36399 * 19 18 5 21 21 C 1.36937 * 120.63319 * 233.63350 * 20 19 18 22 22 H 1.08006 * 119.99890 * 151.80428 * 21 20 19 23 23 C 1.38810 * 119.99889 * 331.79829 * 21 20 19 24 24 N 1.31613 * 120.00063 * 343.09849 * 23 21 20 25 25 Si 1.86800 * 119.99876 * 163.09313 * 23 21 20 26 26 H 1.48501 * 109.47396 * 60.00318 * 25 23 21 27 27 H 1.48496 * 109.47032 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47207 * 300.00299 * 25 23 21 29 29 H 1.09000 * 109.46954 * 180.35479 * 1 2 3 30 30 H 1.08998 * 109.47589 * 300.35768 * 1 2 3 31 31 H 1.09003 * 109.47210 * 60.36320 * 1 2 3 32 32 H 1.08997 * 109.49707 * 174.89758 * 4 2 1 33 33 H 1.08993 * 109.49872 * 54.79617 * 4 2 1 34 34 H 0.97003 * 119.99923 * 25.03207 * 7 5 4 35 35 H 1.09002 * 109.46931 * 300.00729 * 10 8 7 36 36 H 1.09001 * 109.47218 * 59.99768 * 10 8 7 37 37 H 1.08997 * 109.47161 * 300.00306 * 11 10 8 38 38 H 1.08997 * 109.46870 * 60.00404 * 11 10 8 39 39 H 1.08997 * 109.47292 * 300.00071 * 13 12 11 40 40 H 1.09001 * 109.47023 * 60.00598 * 13 12 11 41 41 H 1.09003 * 109.49345 * 181.31491 * 18 5 4 42 42 H 1.08995 * 109.49799 * 301.41662 * 18 5 4 43 43 H 1.09001 * 109.58276 * 185.57405 * 19 18 5 44 44 H 1.09009 * 109.58882 * 65.15416 * 19 18 5 45 45 H 0.97004 * 120.00084 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 1.6415 -2.2041 -1.1700 6 1 0.5565 -2.2816 -1.0992 7 7 2.1027 -2.8979 -2.3751 8 6 1.4752 -4.0160 -2.7908 9 8 0.5285 -4.4474 -2.1675 10 6 1.9500 -4.7300 -4.0300 11 6 1.0724 -5.9584 -4.2787 12 8 1.5223 -6.6351 -5.4542 13 6 0.7661 -7.8038 -5.7773 14 6 1.3327 -8.4431 -7.0466 15 9 2.6696 -8.7966 -6.8338 16 9 0.5921 -9.5869 -7.3633 17 9 1.2545 -7.5299 -8.1036 18 6 2.2801 -2.8464 0.0637 19 6 1.7692 -2.1409 1.3238 20 7 2.0225 -0.6995 1.1946 21 6 2.7052 -0.0210 2.1686 22 1 3.2770 0.8592 1.9139 23 6 2.6620 -0.4642 3.4833 24 7 1.7278 -1.3103 3.8622 25 14 3.9300 0.1401 4.7148 26 1 3.8419 1.6179 4.8314 27 1 3.6675 -0.4780 6.0392 28 1 5.2892 -0.2397 4.2525 29 1 -0.3633 -1.0277 0.0064 30 1 -0.3634 0.5194 0.8867 31 1 -0.3634 0.5082 -0.8932 32 1 3.1297 -0.6504 -1.2913 33 1 1.6075 -0.2786 -2.1367 34 1 2.8598 -2.5527 -2.8737 35 1 1.8834 -4.0571 -4.8850 36 1 2.9850 -5.0438 -3.8946 37 1 1.1387 -6.6313 -3.4238 38 1 0.0376 -5.6441 -4.4144 39 1 0.8268 -8.5150 -4.9536 40 1 -0.2753 -7.5282 -5.9435 41 1 2.0123 -3.9022 0.1039 42 1 3.3640 -2.7474 0.0055 43 1 2.2945 -2.5274 2.1973 44 1 0.6986 -2.3155 1.4318 45 1 1.6979 -1.6203 4.7809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281671374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:10 Heat of formation + Delta-G solvation = -225.528375 kcal Electronic energy + Delta-G solvation = -29494.560076 eV Core-core repulsion = 24711.439817 eV Total energy + Delta-G solvation = -4783.120259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.48860 -48.05153 -47.94009 -39.97847 -38.60987 -37.72878 -34.54902 -32.74073 -32.33203 -30.81932 -29.89895 -29.19584 -26.94892 -24.71625 -23.85403 -23.66991 -21.98243 -21.59443 -20.26552 -19.06031 -19.02656 -18.51001 -18.09630 -17.39472 -16.86406 -16.71575 -16.02710 -15.86944 -15.22115 -14.86300 -14.73371 -14.71338 -14.40754 -14.30777 -14.12381 -14.11730 -13.93871 -13.76241 -13.68793 -13.42681 -13.04795 -12.65360 -12.52288 -12.24833 -12.12079 -11.83727 -11.75207 -11.43576 -11.08688 -10.96418 -10.80615 -10.63820 -10.38313 -10.31756 -10.22615 -10.08882 -9.80824 -9.74308 -9.37998 -8.76973 -8.43203 -6.70562 -5.80261 -3.23313 1.98891 2.66709 2.74677 3.30941 3.37038 3.43324 3.43834 3.49231 3.55805 4.07143 4.47021 4.47116 4.54361 4.56355 4.70589 4.90506 5.15023 5.28257 5.35850 5.37942 5.40015 5.46436 5.57885 5.75968 5.99066 6.04102 6.23399 6.27909 6.35040 6.38939 6.43235 6.55568 6.62693 6.75645 6.84500 6.92511 7.13180 7.36098 7.60808 7.67910 7.78021 8.29077 8.43997 9.19587 9.82873 10.39622 11.27979 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.027086 B = 0.001827 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.478482 B =15321.746147 C =15691.349678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.170 3.830 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.149 3.851 6 H 0.086 0.914 7 N -0.722 5.722 8 C 0.515 3.485 9 O -0.543 6.543 10 C -0.141 4.141 11 C 0.080 3.920 12 O -0.377 6.377 13 C 0.020 3.980 14 C 0.462 3.538 15 F -0.176 7.176 16 F -0.177 7.177 17 F -0.176 7.176 18 C -0.147 4.147 19 C 0.174 3.826 20 N -0.585 5.585 21 C -0.254 4.254 22 H 0.065 0.935 23 C 0.004 3.996 24 N -0.900 5.900 25 Si 0.902 3.098 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.284 1.284 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.396 0.604 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.021 0.979 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.833 -11.083 -21.326 24.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.061 3.939 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.046 3.954 6 H 0.104 0.896 7 N -0.372 5.372 8 C 0.300 3.700 9 O -0.421 6.421 10 C -0.181 4.181 11 C 0.004 3.996 12 O -0.297 6.297 13 C -0.058 4.058 14 C 0.407 3.593 15 F -0.157 7.157 16 F -0.159 7.159 17 F -0.158 7.158 18 C -0.187 4.187 19 C 0.047 3.953 20 N -0.306 5.306 21 C -0.384 4.384 22 H 0.083 0.917 23 C -0.195 4.195 24 N -0.544 5.544 25 Si 0.732 3.268 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.211 1.211 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.230 0.770 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.039 0.961 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.374 -11.390 -20.801 23.755 hybrid contribution 0.883 0.196 0.375 0.979 sum -0.491 -11.193 -20.426 23.297 Atomic orbital electron populations 1.22303 0.98698 1.01130 1.00050 1.20446 0.91786 0.95128 0.86513 0.91616 1.22303 1.01198 0.94127 0.99627 1.21136 0.99830 0.91360 0.83104 0.89635 1.46321 1.34601 1.27000 1.29241 1.20219 0.83104 0.81083 0.85597 1.90732 1.28183 1.65672 1.57515 1.21481 1.01959 0.97041 0.97625 1.22289 0.98059 0.93274 0.86028 1.87817 1.56266 1.38847 1.46744 1.23484 0.97245 0.90796 0.94307 1.20202 0.76368 0.76668 0.86037 1.93225 1.35455 1.92222 1.94817 1.93213 1.76955 1.51981 1.93741 1.93219 1.95963 1.66538 1.60045 1.22572 1.00172 0.99108 0.96871 1.20740 0.97722 0.82935 0.93857 1.44150 1.63765 1.03426 1.19271 1.19112 1.21915 1.10683 0.86654 0.91724 1.25061 0.97651 0.99974 0.96840 1.70019 1.31665 1.35751 1.16981 0.86380 0.81561 0.78356 0.80498 1.20904 1.21680 1.21069 0.93210 0.92605 0.94508 0.91851 0.92581 0.77011 0.87951 0.87864 0.91385 0.91472 0.88352 0.88402 0.92973 0.92667 0.89324 0.96069 0.93543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.02 37.16 0.34 -2.70 16 2 C 0.17 3.32 3.29 -67.60 -0.22 3.10 16 3 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 4 C -0.13 -2.10 5.02 -26.61 -0.13 -2.24 16 5 C 0.15 2.43 2.21 -67.89 -0.15 2.28 16 6 H 0.09 1.59 5.94 -51.93 -0.31 1.28 16 7 N -0.72 -9.14 5.08 -53.76 -0.27 -9.41 16 8 C 0.51 6.64 7.79 -10.99 -0.09 6.56 16 9 O -0.54 -9.23 15.64 5.56 0.09 -9.14 16 10 C -0.14 -1.24 6.07 -27.89 -0.17 -1.41 16 11 C 0.08 0.71 5.23 37.16 0.19 0.90 16 12 O -0.38 -3.31 10.23 -35.23 -0.36 -3.67 16 13 C 0.02 0.13 5.90 37.16 0.22 0.35 16 14 C 0.46 3.58 3.32 37.16 0.12 3.71 16 15 F -0.18 -1.63 17.26 2.25 0.04 -1.59 16 16 F -0.18 -1.35 17.32 2.25 0.04 -1.31 16 17 F -0.18 -1.61 17.26 2.25 0.04 -1.57 16 18 C -0.15 -2.81 5.65 -26.61 -0.15 -2.96 16 19 C 0.17 4.08 4.89 -3.72 -0.02 4.06 16 20 N -0.58 -13.94 2.70 -164.78 -0.44 -14.38 16 21 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 22 H 0.07 1.68 7.89 -52.48 -0.41 1.26 16 23 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 24 N -0.90 -25.74 11.20 55.49 0.62 -25.12 16 25 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H 0.05 0.97 5.72 -51.93 -0.30 0.67 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.40 3.82 8.60 -40.82 -0.35 3.47 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 2.35 6.06 -51.93 -0.31 2.04 16 44 H 0.02 0.53 7.48 -51.92 -0.39 0.15 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 376.03 15.07 5.67 5.67 Total: -1.00 -31.28 376.03 -6.59 -37.87 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.69 Total: 1.56 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -0.29 Total: 4.79 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.10 Total: -48.92 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.27 Total: -12.81 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.12 Total: -4.46 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.28 -6.59 -37.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281671374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.660 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds