Wall clock time and date at job start Tue Mar 31 2020 21:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.69778 * 2 1 4 4 C 1.53189 * 109.58635 * 239.64200 * 2 1 3 5 5 C 1.53041 * 109.31253 * 294.84593 * 4 2 1 6 6 H 1.09004 * 109.46289 * 58.66071 * 5 4 2 7 7 N 1.46503 * 109.45838 * 178.62916 * 5 4 2 8 8 C 1.34780 * 119.99990 * 205.02453 * 7 5 4 9 9 O 1.21282 * 119.99983 * 0.02562 * 8 7 5 10 10 C 1.50694 * 120.00143 * 180.02562 * 8 7 5 11 11 C 1.52997 * 109.47270 * 180.02562 * 10 8 7 12 12 O 1.42904 * 109.47038 * 179.97438 * 11 10 8 13 13 C 1.42898 * 113.99778 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47245 * 179.97438 * 13 12 11 15 15 F 1.39907 * 109.46590 * 60.00140 * 14 13 12 16 16 F 1.39897 * 109.47626 * 180.02562 * 14 13 12 17 17 F 1.39899 * 109.47175 * 300.00799 * 14 13 12 18 18 C 1.53044 * 109.53902 * 298.63573 * 5 4 2 19 19 C 1.53188 * 109.30959 * 61.36502 * 18 5 4 20 20 N 1.46917 * 108.78008 * 305.36399 * 19 18 5 21 21 C 1.36937 * 120.63319 * 233.63350 * 20 19 18 22 22 H 1.08006 * 119.99890 * 151.80428 * 21 20 19 23 23 C 1.38810 * 119.99889 * 331.79829 * 21 20 19 24 24 N 1.31613 * 120.00063 * 343.09849 * 23 21 20 25 25 Si 1.86800 * 119.99876 * 163.09313 * 23 21 20 26 26 H 1.48501 * 109.47396 * 60.00318 * 25 23 21 27 27 H 1.48496 * 109.47032 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47207 * 300.00299 * 25 23 21 29 29 H 1.09000 * 109.46954 * 180.35479 * 1 2 3 30 30 H 1.08998 * 109.47589 * 300.35768 * 1 2 3 31 31 H 1.09003 * 109.47210 * 60.36320 * 1 2 3 32 32 H 1.08997 * 109.49707 * 174.89758 * 4 2 1 33 33 H 1.08993 * 109.49872 * 54.79617 * 4 2 1 34 34 H 0.97003 * 119.99923 * 25.03207 * 7 5 4 35 35 H 1.09002 * 109.46931 * 300.00729 * 10 8 7 36 36 H 1.09001 * 109.47218 * 59.99768 * 10 8 7 37 37 H 1.08997 * 109.47161 * 300.00306 * 11 10 8 38 38 H 1.08997 * 109.46870 * 60.00404 * 11 10 8 39 39 H 1.08997 * 109.47292 * 300.00071 * 13 12 11 40 40 H 1.09001 * 109.47023 * 60.00598 * 13 12 11 41 41 H 1.09003 * 109.49345 * 181.31491 * 18 5 4 42 42 H 1.08995 * 109.49799 * 301.41662 * 18 5 4 43 43 H 1.09001 * 109.58276 * 185.57405 * 19 18 5 44 44 H 1.09009 * 109.58882 * 65.15416 * 19 18 5 45 45 H 0.97004 * 120.00084 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 1.6415 -2.2041 -1.1700 6 1 0.5565 -2.2816 -1.0992 7 7 2.1027 -2.8979 -2.3751 8 6 1.4752 -4.0160 -2.7908 9 8 0.5285 -4.4474 -2.1675 10 6 1.9500 -4.7300 -4.0300 11 6 1.0724 -5.9584 -4.2787 12 8 1.5223 -6.6351 -5.4542 13 6 0.7661 -7.8038 -5.7773 14 6 1.3327 -8.4431 -7.0466 15 9 2.6696 -8.7966 -6.8338 16 9 0.5921 -9.5869 -7.3633 17 9 1.2545 -7.5299 -8.1036 18 6 2.2801 -2.8464 0.0637 19 6 1.7692 -2.1409 1.3238 20 7 2.0225 -0.6995 1.1946 21 6 2.7052 -0.0210 2.1686 22 1 3.2770 0.8592 1.9139 23 6 2.6620 -0.4642 3.4833 24 7 1.7278 -1.3103 3.8622 25 14 3.9300 0.1401 4.7148 26 1 3.8419 1.6179 4.8314 27 1 3.6675 -0.4780 6.0392 28 1 5.2892 -0.2397 4.2525 29 1 -0.3633 -1.0277 0.0064 30 1 -0.3634 0.5194 0.8867 31 1 -0.3634 0.5082 -0.8932 32 1 3.1297 -0.6504 -1.2913 33 1 1.6075 -0.2786 -2.1367 34 1 2.8598 -2.5527 -2.8737 35 1 1.8834 -4.0571 -4.8850 36 1 2.9850 -5.0438 -3.8946 37 1 1.1387 -6.6313 -3.4238 38 1 0.0376 -5.6441 -4.4144 39 1 0.8268 -8.5150 -4.9536 40 1 -0.2753 -7.5282 -5.9435 41 1 2.0123 -3.9022 0.1039 42 1 3.3640 -2.7474 0.0055 43 1 2.2945 -2.5274 2.1973 44 1 0.6986 -2.3155 1.4318 45 1 1.6979 -1.6203 4.7809 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281671374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:10 Heat of formation + Delta-G solvation = -245.972933 kcal Electronic energy + Delta-G solvation = -29495.446619 eV Core-core repulsion = 24711.439817 eV Total energy + Delta-G solvation = -4784.006802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.11459 -48.66848 -48.59909 -41.10321 -39.55312 -38.94187 -36.00577 -34.31789 -33.29937 -32.36691 -31.29317 -30.13889 -28.49605 -26.26774 -25.02512 -24.26602 -23.65624 -22.97594 -21.35330 -20.03890 -19.66734 -19.64726 -18.95782 -18.61563 -18.09076 -17.41361 -17.29990 -16.85808 -16.50365 -16.08819 -15.60393 -15.49572 -15.48705 -15.42784 -15.13767 -15.04963 -14.78243 -14.76824 -14.76260 -14.51004 -14.45125 -14.11340 -13.98067 -13.79946 -13.13341 -12.92766 -12.74791 -12.62181 -12.53951 -12.48966 -12.37876 -12.27814 -12.03708 -12.00724 -11.75621 -11.47453 -11.14046 -10.91997 -10.81293 -10.53595 -9.95739 -8.66686 -7.84754 -5.29917 1.39045 1.48038 1.50259 1.56670 1.66318 2.02383 2.51471 2.52782 2.85036 2.99904 3.30747 3.44655 3.63415 3.72243 3.87679 4.02232 4.10615 4.11518 4.14195 4.20531 4.32006 4.47015 4.50914 4.54008 4.72115 4.75011 4.79900 4.83288 4.86395 4.95134 5.11167 5.16614 5.18228 5.35422 5.46441 5.52458 5.61930 5.69442 5.75212 5.78009 6.42204 6.62746 7.17224 7.31589 7.89447 8.41316 9.21529 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.027086 B = 0.001827 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.478482 B =15321.746147 C =15691.349678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 H 0.069 0.931 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.064 0.936 7 N -0.710 5.710 8 C 0.513 3.487 9 O -0.588 6.588 10 C -0.130 4.130 11 C 0.081 3.919 12 O -0.388 6.388 13 C 0.017 3.983 14 C 0.462 3.538 15 F -0.186 7.186 16 F -0.177 7.177 17 F -0.185 7.185 18 C -0.132 4.132 19 C 0.184 3.816 20 N -0.599 5.599 21 C -0.257 4.257 22 H 0.071 0.929 23 C -0.053 4.053 24 N -0.936 5.936 25 Si 0.965 3.035 26 H -0.275 1.275 27 H -0.299 1.299 28 H -0.278 1.278 29 H 0.035 0.965 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.416 0.584 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.044 0.956 42 H 0.059 0.941 43 H 0.051 0.949 44 H -0.010 1.010 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.257 -10.505 -23.889 26.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.052 3.948 3 H 0.087 0.913 4 C -0.157 4.157 5 C 0.056 3.944 6 H 0.082 0.918 7 N -0.361 5.361 8 C 0.301 3.699 9 O -0.468 6.468 10 C -0.169 4.169 11 C 0.005 3.995 12 O -0.308 6.308 13 C -0.061 4.061 14 C 0.407 3.593 15 F -0.168 7.168 16 F -0.158 7.158 17 F -0.167 7.167 18 C -0.172 4.172 19 C 0.057 3.943 20 N -0.322 5.322 21 C -0.387 4.387 22 H 0.089 0.911 23 C -0.249 4.249 24 N -0.582 5.582 25 Si 0.794 3.206 26 H -0.201 1.201 27 H -0.226 1.226 28 H -0.204 1.204 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.253 0.747 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.008 0.992 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.251 -10.790 -23.431 25.798 hybrid contribution 0.493 -0.001 1.109 1.213 sum 0.242 -10.791 -22.323 24.796 Atomic orbital electron populations 1.22185 0.98205 1.00302 1.00531 1.20730 0.92201 0.95516 0.86400 0.91302 1.22126 1.01869 0.92993 0.98756 1.20703 0.98311 0.92016 0.83369 0.91786 1.46039 1.35219 1.26884 1.27989 1.20921 0.82146 0.80584 0.86232 1.90727 1.30246 1.66714 1.59143 1.21422 1.02530 0.97000 0.95977 1.22211 0.98059 0.93286 0.85939 1.87772 1.56895 1.39634 1.46509 1.23678 0.97838 0.90499 0.94037 1.20408 0.75940 0.76583 0.86320 1.93203 1.36388 1.92332 1.94862 1.93212 1.76839 1.51993 1.93789 1.93199 1.95971 1.66857 1.60661 1.22322 1.00272 0.98294 0.96340 1.20420 0.95427 0.83693 0.94740 1.44363 1.64111 1.03613 1.20092 1.19487 1.21519 1.10448 0.87293 0.91124 1.25815 0.99483 1.00810 0.98745 1.70193 1.33607 1.37623 1.16802 0.85373 0.79406 0.78007 0.77841 1.20053 1.22566 1.20367 0.94638 0.95409 0.90666 0.90844 0.88963 0.74675 0.85456 0.86037 0.92081 0.91618 0.86593 0.86367 0.93686 0.92216 0.93036 0.99151 0.94328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.63 9.02 71.98 0.65 -4.98 16 2 C 0.16 6.00 3.29 44.97 0.15 6.15 16 3 H 0.07 2.56 7.93 -2.39 -0.02 2.54 16 4 C -0.12 -3.38 5.02 30.67 0.15 -3.22 16 5 C 0.16 5.00 2.21 45.02 0.10 5.10 16 6 H 0.06 2.33 5.94 -2.38 -0.01 2.32 16 7 N -0.71 -15.90 5.08 -442.39 -2.25 -18.15 16 8 C 0.51 12.10 7.79 87.65 0.68 12.79 16 9 O -0.59 -19.52 15.64 -3.04 -0.05 -19.57 16 10 C -0.13 -1.87 6.07 29.85 0.18 -1.69 16 11 C 0.08 1.27 5.23 71.98 0.38 1.64 16 12 O -0.39 -5.88 10.23 -148.98 -1.52 -7.40 16 13 C 0.02 0.19 5.90 71.98 0.42 0.61 16 14 C 0.46 6.47 3.32 71.98 0.24 6.71 16 15 F -0.19 -3.22 17.26 44.97 0.78 -2.45 16 16 F -0.18 -2.45 17.32 44.97 0.78 -1.67 16 17 F -0.19 -3.12 17.26 44.97 0.78 -2.35 16 18 C -0.13 -5.05 5.65 30.67 0.17 -4.88 16 19 C 0.18 8.97 4.89 86.36 0.42 9.40 16 20 N -0.60 -28.89 2.70 -675.23 -1.82 -30.71 16 21 C -0.26 -13.73 9.58 84.03 0.81 -12.92 16 22 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 23 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 24 N -0.94 -55.78 11.20 21.65 0.24 -55.54 16 25 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 26 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 27 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 28 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 29 H 0.03 1.39 5.72 -2.39 -0.01 1.37 16 30 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.42 6.25 8.60 -92.71 -0.80 5.46 16 35 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 38 H 0.07 1.04 8.10 -2.39 -0.02 1.02 16 39 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.05 2.88 6.06 -2.39 -0.01 2.86 16 44 H -0.01 -0.52 7.48 -2.38 -0.02 -0.53 16 45 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -70.86 376.03 3.95 -66.90 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.22 Total: 12.18 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 4.77 Total: 12.17 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -3.83 Total: -104.40 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -1.57 Total: -26.97 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 2.33 Total: -6.46 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -70.86 3.95 -66.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281671374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.069 kcal (2) G-P(sol) polarization free energy of solvation -70.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds