Wall clock time and date at job start Tue Mar 31 2020 21:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.69839 * 2 1 4 4 C 1.53197 * 109.58130 * 120.35254 * 2 1 3 5 5 C 1.53045 * 109.30885 * 174.42737 * 4 2 1 6 6 H 1.09000 * 109.46327 * 58.65466 * 5 4 2 7 7 N 1.46504 * 109.45811 * 178.61333 * 5 4 2 8 8 C 1.34770 * 120.00079 * 204.99733 * 7 5 4 9 9 O 1.21291 * 119.99856 * 359.97438 * 8 7 5 10 10 C 1.50700 * 120.00414 * 180.02562 * 8 7 5 11 11 C 1.52991 * 109.47280 * 180.02562 * 10 8 7 12 12 O 1.42904 * 109.47197 * 180.02562 * 11 10 8 13 13 C 1.42902 * 114.00120 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.46863 * 180.02562 * 13 12 11 15 15 F 1.39892 * 109.47598 * 59.99261 * 14 13 12 16 16 F 1.39896 * 109.47081 * 180.02562 * 14 13 12 17 17 F 1.39903 * 109.46792 * 299.99269 * 14 13 12 18 18 C 1.53043 * 109.53402 * 298.62848 * 5 4 2 19 19 C 1.52765 * 109.38080 * 61.24530 * 18 5 4 20 20 N 1.46922 * 109.00869 * 305.58495 * 19 18 5 21 21 C 1.36940 * 120.63034 * 233.58321 * 20 19 18 22 22 H 1.07998 * 119.99798 * 149.97586 * 21 20 19 23 23 C 1.38810 * 119.99822 * 330.25114 * 21 20 19 24 24 N 1.31613 * 119.99993 * 344.24279 * 23 21 20 25 25 Si 1.86797 * 119.99729 * 164.23873 * 23 21 20 26 26 H 1.48498 * 109.47286 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47054 * 120.00186 * 25 23 21 28 28 H 1.48509 * 109.47234 * 239.99943 * 25 23 21 29 29 H 1.09001 * 109.46923 * 180.35692 * 1 2 3 30 30 H 1.08992 * 109.47317 * 300.35732 * 1 2 3 31 31 H 1.09001 * 109.46661 * 60.36001 * 1 2 3 32 32 H 1.09002 * 109.49505 * 294.37165 * 4 2 1 33 33 H 1.08993 * 109.50095 * 54.47409 * 4 2 1 34 34 H 0.97007 * 119.99748 * 24.99934 * 7 5 4 35 35 H 1.08998 * 109.46982 * 300.00137 * 10 8 7 36 36 H 1.09007 * 109.46911 * 59.99821 * 10 8 7 37 37 H 1.09006 * 109.46929 * 299.99347 * 11 10 8 38 38 H 1.08994 * 109.47519 * 59.99889 * 11 10 8 39 39 H 1.08996 * 109.46762 * 299.99396 * 13 12 11 40 40 H 1.08994 * 109.47182 * 59.99470 * 13 12 11 41 41 H 1.09006 * 109.49539 * 181.31601 * 18 5 4 42 42 H 1.08994 * 109.50096 * 301.38800 * 18 5 4 43 43 H 1.09003 * 109.50587 * 185.70073 * 19 18 5 44 44 H 1.08998 * 109.42865 * 65.41864 * 19 18 5 45 45 H 0.97006 * 120.00035 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2455 5 6 3.5675 -0.8479 1.1704 6 1 4.0061 0.1475 1.0995 7 7 4.0651 -1.5156 2.3757 8 6 5.3293 -1.3020 2.7912 9 8 6.0551 -0.5573 2.1669 10 6 5.8414 -1.9893 4.0307 11 6 7.2938 -1.5775 4.2790 12 8 7.7796 -2.2297 5.4540 13 6 9.1346 -1.9112 5.7774 14 6 9.5462 -2.6619 7.0456 15 9 9.4292 -4.0393 6.8309 16 9 10.8725 -2.3497 7.3626 17 9 8.7128 -2.2823 8.1033 18 6 3.9569 -1.6658 -0.0632 19 6 3.4645 -0.9520 -1.3209 20 7 2.0226 -0.6996 -1.1944 21 6 1.1538 -1.1136 -2.1685 22 1 0.1395 -1.3796 -1.9098 23 6 1.5783 -1.1968 -3.4874 24 7 2.6895 -0.5980 -3.8601 25 14 0.5725 -2.1587 -4.7334 26 1 -0.6233 -2.7334 -4.0665 27 1 0.1418 -1.2520 -5.8277 28 1 1.3999 -3.2559 -5.2965 29 1 -0.3633 -1.0277 0.0064 30 1 -0.3633 0.5193 0.8867 31 1 -0.3633 0.5082 -0.8932 32 1 1.7659 -0.1667 2.1369 33 1 1.6029 -1.7252 1.2915 34 1 3.4847 -2.1115 2.8747 35 1 5.2307 -1.6991 4.8856 36 1 5.7876 -3.0696 3.8957 37 1 7.9048 -1.8675 3.4241 38 1 7.3473 -0.4973 4.4141 39 1 9.7840 -2.2073 4.9536 40 1 9.2258 -0.8380 5.9442 41 1 5.0413 -1.7696 -0.1033 42 1 3.4988 -2.6530 -0.0047 43 1 3.6505 -1.5800 -2.1922 44 1 3.9929 -0.0050 -1.4307 45 1 2.9864 -0.6564 -4.7817 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281671375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:13 Heat of formation + Delta-G solvation = -225.590592 kcal Electronic energy + Delta-G solvation = -29365.611818 eV Core-core repulsion = 24582.488861 eV Total energy + Delta-G solvation = -4783.122957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.49048 -48.05259 -47.94209 -39.96019 -38.58909 -37.66008 -34.64910 -32.68512 -32.33638 -31.28655 -29.89072 -29.18681 -26.43345 -25.08173 -23.93383 -23.67562 -22.01204 -20.96024 -20.10085 -19.24796 -19.03989 -19.02768 -18.17250 -17.40153 -16.72679 -16.42830 -15.97075 -15.87928 -15.22618 -15.07940 -14.85950 -14.73213 -14.40850 -14.25993 -14.12514 -14.11807 -13.99568 -13.77165 -13.59686 -13.43171 -13.27841 -12.82825 -12.68438 -12.13995 -11.85693 -11.75619 -11.62736 -11.25317 -11.15102 -10.94722 -10.92123 -10.68710 -10.33752 -10.31352 -10.18193 -10.07082 -9.89928 -9.76463 -9.39215 -8.76811 -8.44950 -6.65782 -5.79145 -3.23348 1.98757 2.66163 2.74381 3.30464 3.35768 3.43812 3.45280 3.48649 3.55745 4.06903 4.46840 4.47397 4.54278 4.56170 4.70324 4.90263 5.14902 5.25616 5.35079 5.37877 5.41403 5.45949 5.55581 5.74062 5.95409 6.12479 6.21247 6.28980 6.34824 6.38204 6.39334 6.47634 6.60953 6.75620 6.84432 7.00643 7.07470 7.35200 7.60044 7.66739 7.81444 8.28415 8.45322 9.20552 9.84215 10.41362 11.29657 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.027222 B = 0.001802 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.319367 B =15530.382750 C =15995.214171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.082 0.918 7 N -0.721 5.721 8 C 0.515 3.485 9 O -0.543 6.543 10 C -0.141 4.141 11 C 0.080 3.920 12 O -0.377 6.377 13 C 0.020 3.980 14 C 0.462 3.538 15 F -0.176 7.176 16 F -0.177 7.177 17 F -0.176 7.176 18 C -0.146 4.146 19 C 0.175 3.825 20 N -0.587 5.587 21 C -0.251 4.251 22 H 0.070 0.930 23 C 0.002 3.998 24 N -0.901 5.901 25 Si 0.900 3.100 26 H -0.278 1.278 27 H -0.291 1.291 28 H -0.290 1.290 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.397 0.603 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.088 0.912 44 H 0.020 0.980 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.155 -3.319 21.406 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.044 0.956 4 C -0.174 4.174 5 C 0.047 3.953 6 H 0.100 0.900 7 N -0.371 5.371 8 C 0.300 3.700 9 O -0.421 6.421 10 C -0.181 4.181 11 C 0.003 3.997 12 O -0.297 6.297 13 C -0.058 4.058 14 C 0.407 3.593 15 F -0.157 7.157 16 F -0.159 7.159 17 F -0.158 7.158 18 C -0.187 4.187 19 C 0.049 3.951 20 N -0.311 5.311 21 C -0.381 4.381 22 H 0.088 0.912 23 C -0.196 4.196 24 N -0.545 5.545 25 Si 0.730 3.270 26 H -0.203 1.203 27 H -0.218 1.218 28 H -0.216 1.216 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.230 0.770 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.038 0.962 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.614 -2.903 20.901 23.621 hybrid contribution -0.441 -0.801 -0.389 0.994 sum 10.172 -3.704 20.512 23.194 Atomic orbital electron populations 1.21791 0.95724 1.01388 1.00385 1.20361 0.93108 0.93579 0.86600 0.95551 1.22388 0.93628 1.01689 0.99715 1.21073 0.94313 0.96754 0.83176 0.90034 1.46304 1.13061 1.48573 1.29183 1.20225 0.82330 0.81838 0.85611 1.90737 1.56176 1.37697 1.57473 1.21479 0.96016 1.02989 0.97608 1.22288 0.94280 0.97047 0.86037 1.87817 1.24644 1.70426 1.46792 1.23485 0.87434 1.00587 0.94326 1.20199 0.74747 0.78311 0.86013 1.93221 1.95600 1.32107 1.94783 1.93213 1.36112 1.92833 1.93733 1.93220 1.71634 1.90923 1.59993 1.22497 0.99709 0.99623 0.96832 1.20639 0.83348 0.97309 0.93846 1.44152 1.02999 1.64858 1.19073 1.19189 0.95111 1.37635 0.86125 0.91226 1.25112 0.97890 0.99613 0.97027 1.70035 1.24040 1.43784 1.16687 0.86266 0.79589 0.79642 0.81515 1.20276 1.21763 1.21641 0.92787 0.94305 0.91811 0.92664 0.91763 0.76978 0.87948 0.87856 0.91391 0.91462 0.88361 0.88389 0.92900 0.92667 0.89404 0.96201 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.95 37.16 0.30 -2.12 16 2 C 0.17 3.38 3.50 -67.60 -0.24 3.14 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -2.14 4.84 -26.61 -0.13 -2.27 16 5 C 0.15 2.47 2.42 -67.88 -0.16 2.31 16 6 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 7 N -0.72 -9.14 5.08 -53.76 -0.27 -9.41 16 8 C 0.51 6.65 7.79 -10.99 -0.09 6.56 16 9 O -0.54 -9.25 15.65 5.55 0.09 -9.16 16 10 C -0.14 -1.24 6.07 -27.89 -0.17 -1.41 16 11 C 0.08 0.71 5.23 37.15 0.19 0.90 16 12 O -0.38 -3.31 10.23 -35.23 -0.36 -3.67 16 13 C 0.02 0.13 5.90 37.16 0.22 0.35 16 14 C 0.46 3.58 3.32 37.16 0.12 3.71 16 15 F -0.18 -1.63 17.26 2.25 0.04 -1.59 16 16 F -0.18 -1.35 17.32 2.25 0.04 -1.31 16 17 F -0.18 -1.61 17.26 2.25 0.04 -1.57 16 18 C -0.15 -2.80 5.64 -26.83 -0.15 -2.95 16 19 C 0.17 4.13 5.26 -3.93 -0.02 4.11 16 20 N -0.59 -14.06 2.99 -165.03 -0.49 -14.56 16 21 C -0.25 -6.57 8.57 -15.06 -0.13 -6.70 16 22 H 0.07 1.78 6.24 -52.49 -0.33 1.45 16 23 C 0.00 0.06 4.93 -17.43 -0.09 -0.02 16 24 N -0.90 -25.87 11.24 55.49 0.62 -25.25 16 25 Si 0.90 21.31 29.58 -169.99 -5.03 16.28 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H 0.05 0.97 7.44 -51.93 -0.39 0.58 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.25 7.63 -51.93 -0.40 0.85 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.40 3.83 8.60 -40.82 -0.35 3.48 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 37 H 0.07 0.63 8.10 -51.93 -0.42 0.20 16 38 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.09 2.33 6.15 -51.93 -0.32 2.01 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 377.03 15.07 5.68 5.68 Total: -1.00 -31.42 377.03 -6.79 -38.20 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.80 Total: 0.74 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -0.34 Total: 5.61 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.14 Total: -49.21 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.27 Total: -12.83 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.12 Total: -4.46 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.42 -6.79 -38.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281671375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.388 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds