Wall clock time and date at job start Tue Mar 31 2020 21:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.69839 * 2 1 4 4 C 1.53197 * 109.58130 * 120.35254 * 2 1 3 5 5 C 1.53045 * 109.30885 * 174.42737 * 4 2 1 6 6 H 1.09000 * 109.46327 * 58.65466 * 5 4 2 7 7 N 1.46504 * 109.45811 * 178.61333 * 5 4 2 8 8 C 1.34770 * 120.00079 * 204.99733 * 7 5 4 9 9 O 1.21291 * 119.99856 * 359.97438 * 8 7 5 10 10 C 1.50700 * 120.00414 * 180.02562 * 8 7 5 11 11 C 1.52991 * 109.47280 * 180.02562 * 10 8 7 12 12 O 1.42904 * 109.47197 * 180.02562 * 11 10 8 13 13 C 1.42902 * 114.00120 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.46863 * 180.02562 * 13 12 11 15 15 F 1.39892 * 109.47598 * 59.99261 * 14 13 12 16 16 F 1.39896 * 109.47081 * 180.02562 * 14 13 12 17 17 F 1.39903 * 109.46792 * 299.99269 * 14 13 12 18 18 C 1.53043 * 109.53402 * 298.62848 * 5 4 2 19 19 C 1.52765 * 109.38080 * 61.24530 * 18 5 4 20 20 N 1.46922 * 109.00869 * 305.58495 * 19 18 5 21 21 C 1.36940 * 120.63034 * 233.58321 * 20 19 18 22 22 H 1.07998 * 119.99798 * 149.97586 * 21 20 19 23 23 C 1.38810 * 119.99822 * 330.25114 * 21 20 19 24 24 N 1.31613 * 119.99993 * 344.24279 * 23 21 20 25 25 Si 1.86797 * 119.99729 * 164.23873 * 23 21 20 26 26 H 1.48498 * 109.47286 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47054 * 120.00186 * 25 23 21 28 28 H 1.48509 * 109.47234 * 239.99943 * 25 23 21 29 29 H 1.09001 * 109.46923 * 180.35692 * 1 2 3 30 30 H 1.08992 * 109.47317 * 300.35732 * 1 2 3 31 31 H 1.09001 * 109.46661 * 60.36001 * 1 2 3 32 32 H 1.09002 * 109.49505 * 294.37165 * 4 2 1 33 33 H 1.08993 * 109.50095 * 54.47409 * 4 2 1 34 34 H 0.97007 * 119.99748 * 24.99934 * 7 5 4 35 35 H 1.08998 * 109.46982 * 300.00137 * 10 8 7 36 36 H 1.09007 * 109.46911 * 59.99821 * 10 8 7 37 37 H 1.09006 * 109.46929 * 299.99347 * 11 10 8 38 38 H 1.08994 * 109.47519 * 59.99889 * 11 10 8 39 39 H 1.08996 * 109.46762 * 299.99396 * 13 12 11 40 40 H 1.08994 * 109.47182 * 59.99470 * 13 12 11 41 41 H 1.09006 * 109.49539 * 181.31601 * 18 5 4 42 42 H 1.08994 * 109.50096 * 301.38800 * 18 5 4 43 43 H 1.09003 * 109.50587 * 185.70073 * 19 18 5 44 44 H 1.08998 * 109.42865 * 65.41864 * 19 18 5 45 45 H 0.97006 * 120.00035 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2455 5 6 3.5675 -0.8479 1.1704 6 1 4.0061 0.1475 1.0995 7 7 4.0651 -1.5156 2.3757 8 6 5.3293 -1.3020 2.7912 9 8 6.0551 -0.5573 2.1669 10 6 5.8414 -1.9893 4.0307 11 6 7.2938 -1.5775 4.2790 12 8 7.7796 -2.2297 5.4540 13 6 9.1346 -1.9112 5.7774 14 6 9.5462 -2.6619 7.0456 15 9 9.4292 -4.0393 6.8309 16 9 10.8725 -2.3497 7.3626 17 9 8.7128 -2.2823 8.1033 18 6 3.9569 -1.6658 -0.0632 19 6 3.4645 -0.9520 -1.3209 20 7 2.0226 -0.6996 -1.1944 21 6 1.1538 -1.1136 -2.1685 22 1 0.1395 -1.3796 -1.9098 23 6 1.5783 -1.1968 -3.4874 24 7 2.6895 -0.5980 -3.8601 25 14 0.5725 -2.1587 -4.7334 26 1 -0.6233 -2.7334 -4.0665 27 1 0.1418 -1.2520 -5.8277 28 1 1.3999 -3.2559 -5.2965 29 1 -0.3633 -1.0277 0.0064 30 1 -0.3633 0.5193 0.8867 31 1 -0.3633 0.5082 -0.8932 32 1 1.7659 -0.1667 2.1369 33 1 1.6029 -1.7252 1.2915 34 1 3.4847 -2.1115 2.8747 35 1 5.2307 -1.6991 4.8856 36 1 5.7876 -3.0696 3.8957 37 1 7.9048 -1.8675 3.4241 38 1 7.3473 -0.4973 4.4141 39 1 9.7840 -2.2073 4.9536 40 1 9.2258 -0.8380 5.9442 41 1 5.0413 -1.7696 -0.1033 42 1 3.4988 -2.6530 -0.0047 43 1 3.6505 -1.5800 -2.1922 44 1 3.9929 -0.0050 -1.4307 45 1 2.9864 -0.6564 -4.7817 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281671375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:12 Heat of formation + Delta-G solvation = -246.371677 kcal Electronic energy + Delta-G solvation = -29366.512954 eV Core-core repulsion = 24582.488861 eV Total energy + Delta-G solvation = -4784.024093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.11711 -48.67030 -48.60143 -41.08048 -39.50337 -38.93701 -36.09451 -34.22952 -33.46113 -32.70970 -31.25653 -30.12257 -27.97062 -26.74132 -24.99162 -24.26751 -23.61924 -22.32393 -21.36734 -20.77504 -19.67547 -19.64917 -18.85646 -18.39365 -18.05480 -17.39815 -17.24986 -16.85765 -16.71542 -16.09965 -15.73177 -15.52834 -15.49126 -15.42742 -15.05155 -14.98039 -14.95813 -14.78322 -14.76661 -14.63207 -14.54483 -14.36819 -13.92550 -13.32918 -12.97828 -12.78410 -12.70118 -12.67345 -12.60026 -12.49714 -12.38405 -12.33061 -12.05078 -11.83439 -11.70487 -11.48352 -11.31411 -10.92397 -10.82695 -10.55501 -9.98234 -8.63335 -7.83459 -5.29904 1.38639 1.46769 1.49062 1.58774 1.65091 2.01296 2.50362 2.53048 2.84703 2.99767 3.32782 3.44260 3.60294 3.71763 3.89501 4.01510 4.08843 4.11044 4.13168 4.18716 4.29190 4.41426 4.50244 4.63362 4.72603 4.75993 4.78230 4.82685 4.87287 4.97299 5.09617 5.13010 5.18271 5.40908 5.50096 5.56849 5.59710 5.72461 5.74317 5.74771 6.44201 6.61406 7.18034 7.30394 7.90027 8.42734 9.24089 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.027222 B = 0.001802 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.319367 B =15530.382750 C =15995.214171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.158 3.842 3 H 0.010 0.990 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.056 0.944 7 N -0.709 5.709 8 C 0.513 3.487 9 O -0.588 6.588 10 C -0.129 4.129 11 C 0.081 3.919 12 O -0.388 6.388 13 C 0.017 3.983 14 C 0.462 3.538 15 F -0.186 7.186 16 F -0.177 7.177 17 F -0.185 7.185 18 C -0.130 4.130 19 C 0.183 3.817 20 N -0.603 5.603 21 C -0.246 4.246 22 H 0.080 0.920 23 C -0.058 4.058 24 N -0.941 5.941 25 Si 0.963 3.037 26 H -0.261 1.261 27 H -0.297 1.297 28 H -0.295 1.295 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.417 0.583 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.052 0.948 44 H -0.014 1.014 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.984 -4.394 24.065 26.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.028 0.972 4 C -0.157 4.157 5 C 0.057 3.943 6 H 0.074 0.926 7 N -0.360 5.360 8 C 0.301 3.699 9 O -0.469 6.469 10 C -0.169 4.169 11 C 0.005 3.995 12 O -0.308 6.308 13 C -0.061 4.061 14 C 0.408 3.592 15 F -0.168 7.168 16 F -0.158 7.158 17 F -0.167 7.167 18 C -0.170 4.170 19 C 0.056 3.944 20 N -0.327 5.327 21 C -0.376 4.376 22 H 0.097 0.903 23 C -0.253 4.253 24 N -0.588 5.588 25 Si 0.792 3.208 26 H -0.185 1.185 27 H -0.224 1.224 28 H -0.222 1.222 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.254 0.746 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.004 0.996 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.409 -4.005 23.630 25.748 hybrid contribution -0.031 -0.406 -1.148 1.218 sum 9.378 -4.411 22.482 24.755 Atomic orbital electron populations 1.21711 0.93920 1.01693 1.01112 1.20661 0.94701 0.92909 0.86567 0.97188 1.22182 0.92561 1.02268 0.98733 1.20639 0.94915 0.95214 0.83579 0.92582 1.46010 1.13556 1.48560 1.27887 1.20943 0.81678 0.81012 0.86261 1.90731 1.57285 1.39748 1.59132 1.21420 0.96106 1.03439 0.95916 1.22210 0.94357 0.96983 0.85955 1.87771 1.25850 1.70627 1.46545 1.23679 0.86712 1.01603 0.94064 1.20402 0.74627 0.77922 0.86289 1.93199 1.95653 1.33089 1.94828 1.93212 1.36075 1.92767 1.93780 1.93201 1.71936 1.90946 1.60608 1.22231 0.99063 0.99629 0.96117 1.20346 0.83721 0.95409 0.94902 1.44417 1.02658 1.65564 1.20067 1.19565 0.95584 1.35916 0.86531 0.90256 1.25883 0.99176 1.01189 0.99065 1.70207 1.26059 1.45963 1.16525 0.85266 0.78574 0.77916 0.79080 1.18521 1.22426 1.22215 0.92610 0.90412 0.94268 0.89131 0.90544 0.74590 0.85432 0.85966 0.92090 0.91636 0.86603 0.86362 0.93577 0.91987 0.92954 0.99613 0.94472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 7.95 71.98 0.57 -3.67 16 2 C 0.16 6.07 3.50 44.98 0.16 6.23 16 3 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 4 C -0.12 -3.41 4.84 30.68 0.15 -3.26 16 5 C 0.16 5.10 2.42 45.02 0.11 5.21 16 6 H 0.06 2.10 7.58 -2.39 -0.02 2.08 16 7 N -0.71 -15.96 5.08 -442.38 -2.25 -18.21 16 8 C 0.51 12.18 7.79 87.66 0.68 12.86 16 9 O -0.59 -19.73 15.65 -3.06 -0.05 -19.78 16 10 C -0.13 -1.87 6.07 29.85 0.18 -1.69 16 11 C 0.08 1.27 5.23 71.98 0.38 1.65 16 12 O -0.39 -5.88 10.23 -148.98 -1.52 -7.41 16 13 C 0.02 0.19 5.90 71.98 0.42 0.61 16 14 C 0.46 6.48 3.32 71.98 0.24 6.72 16 15 F -0.19 -3.22 17.26 44.97 0.78 -2.44 16 16 F -0.18 -2.45 17.32 44.97 0.78 -1.67 16 17 F -0.19 -3.13 17.26 44.97 0.78 -2.35 16 18 C -0.13 -5.00 5.64 30.53 0.17 -4.82 16 19 C 0.18 9.02 5.26 86.22 0.45 9.47 16 20 N -0.60 -29.22 2.99 -676.05 -2.02 -31.25 16 21 C -0.25 -12.93 8.57 84.03 0.72 -12.21 16 22 H 0.08 3.96 6.24 -2.91 -0.02 3.95 16 23 C -0.06 -3.24 4.93 84.86 0.42 -2.83 16 24 N -0.94 -56.42 11.24 21.65 0.24 -56.18 16 25 Si 0.96 44.55 29.58 68.60 2.03 46.58 16 26 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 27 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 28 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 29 H 0.05 1.84 7.44 -2.39 -0.02 1.82 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 1.48 7.63 -2.39 -0.02 1.46 16 32 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.42 6.25 8.60 -92.70 -0.80 5.45 16 35 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.06 1.03 8.10 -2.38 -0.02 1.02 16 38 H 0.07 1.05 8.10 -2.39 -0.02 1.03 16 39 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.05 2.93 6.15 -2.39 -0.01 2.92 16 44 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 45 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 Total: -1.00 -71.57 377.03 3.63 -67.94 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.21 Total: 10.50 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: 4.65 Total: 14.27 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -4.03 Total: -105.63 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.57 Total: -27.19 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 2.33 Total: -6.46 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -71.57 3.63 -67.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281671375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.431 kcal (2) G-P(sol) polarization free energy of solvation -71.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds