Wall clock time and date at job start Tue Mar 31 2020 21:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.70163 * 2 1 4 4 C 1.53192 * 109.58891 * 120.35076 * 2 1 3 5 5 C 1.53045 * 109.31230 * 174.42286 * 4 2 1 6 6 H 1.09001 * 109.45674 * 178.62703 * 5 4 2 7 7 N 1.46495 * 109.45971 * 58.65713 * 5 4 2 8 8 C 1.34776 * 119.99930 * 154.97155 * 7 5 4 9 9 O 1.21285 * 120.00118 * 0.02562 * 8 7 5 10 10 C 1.50704 * 119.99969 * 179.72487 * 8 7 5 11 11 C 1.52995 * 109.47167 * 180.27254 * 10 8 7 12 12 O 1.42903 * 109.47503 * 179.97438 * 11 10 8 13 13 C 1.42898 * 114.00418 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47214 * 180.02562 * 13 12 11 15 15 F 1.39894 * 109.47320 * 59.99517 * 14 13 12 16 16 F 1.39901 * 109.47265 * 180.02562 * 14 13 12 17 17 F 1.39904 * 109.46812 * 299.99862 * 14 13 12 18 18 C 1.53038 * 109.52654 * 298.64538 * 5 4 2 19 19 C 1.53160 * 109.32938 * 61.36967 * 18 5 4 20 20 N 1.46921 * 108.77047 * 305.35631 * 19 18 5 21 21 C 1.36940 * 120.63065 * 233.58749 * 20 19 18 22 22 H 1.07994 * 119.99904 * 150.18266 * 21 20 19 23 23 C 1.38807 * 119.99957 * 330.17600 * 21 20 19 24 24 N 1.31625 * 120.00232 * 344.49480 * 23 21 20 25 25 Si 1.86797 * 120.00003 * 164.49322 * 23 21 20 26 26 H 1.48499 * 109.47369 * 60.00113 * 25 23 21 27 27 H 1.48501 * 109.47571 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47066 * 300.00150 * 25 23 21 29 29 H 1.09008 * 109.46771 * 299.64507 * 1 2 3 30 30 H 1.08993 * 109.47291 * 59.64454 * 1 2 3 31 31 H 1.09002 * 109.46705 * 179.65152 * 1 2 3 32 32 H 1.09001 * 109.49399 * 54.47511 * 4 2 1 33 33 H 1.09000 * 109.52418 * 294.39374 * 4 2 1 34 34 H 0.97004 * 119.99998 * 334.97794 * 7 5 4 35 35 H 1.09000 * 109.47152 * 300.27806 * 10 8 7 36 36 H 1.09001 * 109.46967 * 60.27592 * 10 8 7 37 37 H 1.09000 * 109.47536 * 300.00318 * 11 10 8 38 38 H 1.09001 * 109.46901 * 60.00298 * 11 10 8 39 39 H 1.09005 * 109.46883 * 300.00477 * 13 12 11 40 40 H 1.08996 * 109.46881 * 60.00023 * 13 12 11 41 41 H 1.09005 * 109.49599 * 181.31403 * 18 5 4 42 42 H 1.09000 * 109.49710 * 301.40589 * 18 5 4 43 43 H 1.09003 * 109.59267 * 185.56578 * 19 18 5 44 44 H 1.09003 * 109.70359 * 65.21472 * 19 18 5 45 45 H 0.96999 * 120.00251 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2455 5 6 3.5676 -0.8478 1.1701 6 1 3.9379 -1.3448 2.0668 7 7 4.1571 0.4899 1.0749 8 6 5.4210 0.7007 1.4927 9 8 6.0705 -0.2172 1.9471 10 6 6.0295 2.0755 1.3890 11 6 7.4634 2.0400 1.9212 12 8 8.0407 3.3435 1.8224 13 6 9.3870 3.4204 2.2953 14 6 9.9000 4.8537 2.1428 15 9 9.0934 5.7196 2.8889 16 9 11.2182 4.9289 2.6052 17 9 9.8577 5.2231 0.7941 18 6 3.9567 -1.6654 -0.0636 19 6 3.4650 -0.9469 -1.3237 20 7 2.0226 -0.6995 -1.1945 21 6 1.1537 -1.1128 -2.1689 22 1 0.1397 -1.3797 -1.9104 23 6 1.5763 -1.1884 -3.4889 24 7 2.6872 -0.5876 -3.8598 25 14 0.5686 -2.1430 -4.7390 26 1 -0.7918 -1.5549 -4.8311 27 1 1.2301 -2.0715 -6.0666 28 1 0.4668 -3.5619 -4.3130 29 1 -0.3633 0.5084 0.8932 30 1 -0.3633 0.5193 -0.8867 31 1 -0.3633 -1.0277 -0.0063 32 1 1.6031 -1.7252 1.2914 33 1 1.7660 -0.1672 2.1371 34 1 3.6377 1.2240 0.7111 35 1 6.0368 2.3919 0.3459 36 1 5.4407 2.7788 1.9778 37 1 7.4561 1.7236 2.9643 38 1 8.0522 1.3367 1.3324 39 1 9.4199 3.1329 3.3462 40 1 10.0153 2.7455 1.7141 41 1 5.0410 -1.7693 -0.1040 42 1 3.4981 -2.6526 -0.0053 43 1 3.6519 -1.5717 -2.1972 44 1 3.9901 0.0019 -1.4342 45 1 2.9827 -0.6408 -4.7822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281671376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:16 Heat of formation + Delta-G solvation = -223.172446 kcal Electronic energy + Delta-G solvation = -29940.944633 eV Core-core repulsion = 25157.926535 eV Total energy + Delta-G solvation = -4783.018098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.40405 -47.97024 -47.84971 -39.95988 -38.54932 -37.63659 -34.34808 -32.56996 -32.28948 -31.15659 -29.87799 -29.19432 -26.44294 -25.08179 -24.06004 -23.59866 -22.05241 -20.78517 -20.44991 -18.97844 -18.93748 -18.67888 -18.10714 -17.31964 -16.61533 -16.45960 -16.00677 -15.46035 -15.13449 -15.10136 -14.77955 -14.66063 -14.32371 -14.17425 -14.06683 -14.03058 -14.02844 -13.78617 -13.59933 -13.47349 -13.10959 -12.75639 -12.48138 -12.08274 -11.85404 -11.70101 -11.62005 -11.45800 -11.24204 -11.02703 -10.72617 -10.66279 -10.45512 -10.21987 -10.18842 -10.12240 -9.72027 -9.69899 -9.34097 -8.67308 -8.48648 -6.66441 -5.81181 -3.25679 2.08101 2.78243 2.85917 3.35702 3.41243 3.42268 3.42888 3.60928 3.64243 4.17147 4.45983 4.57163 4.62805 4.67920 4.83487 5.02886 5.24064 5.29698 5.32544 5.39379 5.53696 5.57885 5.62492 5.64641 5.94720 6.06445 6.19534 6.27214 6.32688 6.40884 6.46384 6.52811 6.57553 6.71602 6.91061 6.97591 7.01407 7.33485 7.63605 7.75884 7.79140 8.40612 8.43262 9.18733 9.82103 10.38793 11.27061 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017468 B = 0.002187 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.556853 B =12801.389212 C =13514.892688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.020 0.980 4 C -0.139 4.139 5 C 0.154 3.846 6 H 0.072 0.928 7 N -0.709 5.709 8 C 0.519 3.481 9 O -0.554 6.554 10 C -0.142 4.142 11 C 0.082 3.918 12 O -0.376 6.376 13 C 0.020 3.980 14 C 0.461 3.539 15 F -0.176 7.176 16 F -0.178 7.178 17 F -0.175 7.175 18 C -0.154 4.154 19 C 0.176 3.824 20 N -0.586 5.586 21 C -0.253 4.253 22 H 0.069 0.931 23 C 0.004 3.996 24 N -0.902 5.902 25 Si 0.901 3.099 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.284 1.284 29 H 0.038 0.962 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.403 0.597 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.018 0.982 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.646 7.948 14.022 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.061 3.939 3 H 0.038 0.962 4 C -0.179 4.179 5 C 0.050 3.950 6 H 0.090 0.910 7 N -0.361 5.361 8 C 0.304 3.696 9 O -0.433 6.433 10 C -0.182 4.182 11 C 0.006 3.994 12 O -0.296 6.296 13 C -0.058 4.058 14 C 0.407 3.593 15 F -0.158 7.158 16 F -0.160 7.160 17 F -0.156 7.156 18 C -0.194 4.194 19 C 0.050 3.950 20 N -0.310 5.310 21 C -0.382 4.382 22 H 0.086 0.914 23 C -0.195 4.195 24 N -0.546 5.546 25 Si 0.730 3.270 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.211 1.211 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.239 0.761 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.036 0.964 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.053 7.482 14.075 19.397 hybrid contribution -0.453 -0.083 -0.910 1.020 sum 10.600 7.398 13.165 18.450 Atomic orbital electron populations 1.21801 0.95832 1.01562 1.00250 1.20385 0.93196 0.93084 0.87221 0.96248 1.22373 0.93907 1.02372 0.99238 1.20899 0.93056 0.82269 0.98759 0.90972 1.46126 1.13966 1.12865 1.63102 1.20172 0.82066 0.89765 0.77555 1.90682 1.61042 1.45042 1.46534 1.21475 0.95424 0.96182 1.05161 1.22272 0.93376 0.82284 1.01503 1.87837 1.24457 1.32261 1.84996 1.23472 0.87387 0.91603 1.03357 1.20204 0.75390 0.89419 0.74289 1.93217 1.73072 1.72855 1.76623 1.93208 1.37081 1.96833 1.88859 1.93232 1.96072 1.93028 1.33288 1.22550 0.99857 0.99460 0.97502 1.20684 0.83200 0.97063 0.94010 1.44116 1.02959 1.64988 1.18921 1.19105 0.95177 1.37869 0.86067 0.91371 1.25091 0.97880 0.99491 0.97009 1.70005 1.24087 1.43716 1.16820 0.86407 0.79605 0.80240 0.80699 1.20918 1.21709 1.21075 0.94319 0.91933 0.92671 0.90666 0.92600 0.76115 0.87538 0.87978 0.91642 0.91447 0.88515 0.88396 0.92845 0.91806 0.89799 0.96387 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 7.95 37.16 0.30 -2.08 16 2 C 0.17 3.12 3.20 -67.60 -0.22 2.91 16 3 H 0.02 0.37 6.64 -51.93 -0.34 0.02 16 4 C -0.14 -2.20 5.07 -26.61 -0.13 -2.33 16 5 C 0.15 2.52 2.78 -67.89 -0.19 2.33 16 6 H 0.07 1.19 7.58 -51.93 -0.39 0.79 16 7 N -0.71 -10.44 4.27 -53.77 -0.23 -10.67 16 8 C 0.52 7.42 7.79 -10.98 -0.09 7.33 16 9 O -0.55 -9.55 15.64 5.55 0.09 -9.47 16 10 C -0.14 -1.54 6.07 -27.88 -0.17 -1.71 16 11 C 0.08 0.83 5.23 37.15 0.19 1.02 16 12 O -0.38 -3.80 10.23 -35.23 -0.36 -4.16 16 13 C 0.02 0.15 5.90 37.15 0.22 0.37 16 14 C 0.46 4.04 3.32 37.15 0.12 4.17 16 15 F -0.18 -1.78 17.26 2.25 0.04 -1.74 16 16 F -0.18 -1.49 17.32 2.25 0.04 -1.45 16 17 F -0.17 -1.84 17.26 2.25 0.04 -1.80 16 18 C -0.15 -2.92 5.77 -26.63 -0.15 -3.07 16 19 C 0.18 3.99 5.02 -3.73 -0.02 3.97 16 20 N -0.59 -13.48 2.99 -164.80 -0.49 -13.97 16 21 C -0.25 -6.48 8.58 -15.06 -0.13 -6.61 16 22 H 0.07 1.71 6.23 -52.49 -0.33 1.38 16 23 C 0.00 0.11 4.94 -17.43 -0.09 0.02 16 24 N -0.90 -25.32 11.23 55.49 0.62 -24.70 16 25 Si 0.90 21.15 29.58 -169.99 -5.03 16.12 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.06 1.19 7.67 -51.93 -0.40 0.79 16 31 H 0.05 0.98 7.40 -51.93 -0.38 0.60 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.40 5.60 6.87 -40.82 -0.28 5.32 16 35 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.08 2.19 6.15 -51.93 -0.32 1.87 16 44 H 0.02 0.43 7.74 -51.93 -0.40 0.02 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -30.18 372.77 -6.65 -36.83 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.63 Total: 3.08 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -0.35 Total: 6.31 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.10 Total: -49.34 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.27 Total: -13.63 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.12 Total: -4.99 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.18 -6.65 -36.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281671376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.342 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds