Wall clock time and date at job start Tue Mar 31 2020 21:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.70163 * 2 1 4 4 C 1.53192 * 109.58891 * 120.35076 * 2 1 3 5 5 C 1.53045 * 109.31230 * 174.42286 * 4 2 1 6 6 H 1.09001 * 109.45674 * 178.62703 * 5 4 2 7 7 N 1.46495 * 109.45971 * 58.65713 * 5 4 2 8 8 C 1.34776 * 119.99930 * 154.97155 * 7 5 4 9 9 O 1.21285 * 120.00118 * 0.02562 * 8 7 5 10 10 C 1.50704 * 119.99969 * 179.72487 * 8 7 5 11 11 C 1.52995 * 109.47167 * 180.27254 * 10 8 7 12 12 O 1.42903 * 109.47503 * 179.97438 * 11 10 8 13 13 C 1.42898 * 114.00418 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47214 * 180.02562 * 13 12 11 15 15 F 1.39894 * 109.47320 * 59.99517 * 14 13 12 16 16 F 1.39901 * 109.47265 * 180.02562 * 14 13 12 17 17 F 1.39904 * 109.46812 * 299.99862 * 14 13 12 18 18 C 1.53038 * 109.52654 * 298.64538 * 5 4 2 19 19 C 1.53160 * 109.32938 * 61.36967 * 18 5 4 20 20 N 1.46921 * 108.77047 * 305.35631 * 19 18 5 21 21 C 1.36940 * 120.63065 * 233.58749 * 20 19 18 22 22 H 1.07994 * 119.99904 * 150.18266 * 21 20 19 23 23 C 1.38807 * 119.99957 * 330.17600 * 21 20 19 24 24 N 1.31625 * 120.00232 * 344.49480 * 23 21 20 25 25 Si 1.86797 * 120.00003 * 164.49322 * 23 21 20 26 26 H 1.48499 * 109.47369 * 60.00113 * 25 23 21 27 27 H 1.48501 * 109.47571 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47066 * 300.00150 * 25 23 21 29 29 H 1.09008 * 109.46771 * 299.64507 * 1 2 3 30 30 H 1.08993 * 109.47291 * 59.64454 * 1 2 3 31 31 H 1.09002 * 109.46705 * 179.65152 * 1 2 3 32 32 H 1.09001 * 109.49399 * 54.47511 * 4 2 1 33 33 H 1.09000 * 109.52418 * 294.39374 * 4 2 1 34 34 H 0.97004 * 119.99998 * 334.97794 * 7 5 4 35 35 H 1.09000 * 109.47152 * 300.27806 * 10 8 7 36 36 H 1.09001 * 109.46967 * 60.27592 * 10 8 7 37 37 H 1.09000 * 109.47536 * 300.00318 * 11 10 8 38 38 H 1.09001 * 109.46901 * 60.00298 * 11 10 8 39 39 H 1.09005 * 109.46883 * 300.00477 * 13 12 11 40 40 H 1.08996 * 109.46881 * 60.00023 * 13 12 11 41 41 H 1.09005 * 109.49599 * 181.31403 * 18 5 4 42 42 H 1.09000 * 109.49710 * 301.40589 * 18 5 4 43 43 H 1.09003 * 109.59267 * 185.56578 * 19 18 5 44 44 H 1.09003 * 109.70359 * 65.21472 * 19 18 5 45 45 H 0.96999 * 120.00251 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2455 5 6 3.5676 -0.8478 1.1701 6 1 3.9379 -1.3448 2.0668 7 7 4.1571 0.4899 1.0749 8 6 5.4210 0.7007 1.4927 9 8 6.0705 -0.2172 1.9471 10 6 6.0295 2.0755 1.3890 11 6 7.4634 2.0400 1.9212 12 8 8.0407 3.3435 1.8224 13 6 9.3870 3.4204 2.2953 14 6 9.9000 4.8537 2.1428 15 9 9.0934 5.7196 2.8889 16 9 11.2182 4.9289 2.6052 17 9 9.8577 5.2231 0.7941 18 6 3.9567 -1.6654 -0.0636 19 6 3.4650 -0.9469 -1.3237 20 7 2.0226 -0.6995 -1.1945 21 6 1.1537 -1.1128 -2.1689 22 1 0.1397 -1.3797 -1.9104 23 6 1.5763 -1.1884 -3.4889 24 7 2.6872 -0.5876 -3.8598 25 14 0.5686 -2.1430 -4.7390 26 1 -0.7918 -1.5549 -4.8311 27 1 1.2301 -2.0715 -6.0666 28 1 0.4668 -3.5619 -4.3130 29 1 -0.3633 0.5084 0.8932 30 1 -0.3633 0.5193 -0.8867 31 1 -0.3633 -1.0277 -0.0063 32 1 1.6031 -1.7252 1.2914 33 1 1.7660 -0.1672 2.1371 34 1 3.6377 1.2240 0.7111 35 1 6.0368 2.3919 0.3459 36 1 5.4407 2.7788 1.9778 37 1 7.4561 1.7236 2.9643 38 1 8.0522 1.3367 1.3324 39 1 9.4199 3.1329 3.3462 40 1 10.0153 2.7455 1.7141 41 1 5.0410 -1.7693 -0.1040 42 1 3.4981 -2.6526 -0.0053 43 1 3.6519 -1.5717 -2.1972 44 1 3.9901 0.0019 -1.4342 45 1 2.9827 -0.6408 -4.7822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281671376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:15 Heat of formation + Delta-G solvation = -241.843395 kcal Electronic energy + Delta-G solvation = -29941.754266 eV Core-core repulsion = 25157.926535 eV Total energy + Delta-G solvation = -4783.827732 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.11593 -48.66762 -48.60292 -41.18321 -39.52068 -38.87455 -35.87783 -34.08386 -33.44133 -32.56643 -31.31810 -30.10706 -27.96427 -26.81434 -25.04884 -24.26355 -23.69603 -22.26453 -21.64232 -20.20059 -19.67515 -19.64696 -18.85616 -18.24989 -18.20274 -17.39665 -17.08326 -16.87837 -16.57467 -16.17713 -15.77457 -15.52235 -15.46200 -15.44104 -15.05181 -15.00622 -14.86843 -14.78874 -14.76554 -14.72377 -14.43458 -14.11294 -13.87681 -13.33016 -13.18939 -12.81524 -12.73718 -12.64287 -12.51423 -12.47230 -12.37020 -12.28748 -12.16613 -11.97044 -11.67942 -11.38347 -10.97062 -10.91431 -10.89580 -10.48246 -9.97242 -8.56140 -7.81170 -5.26284 1.39817 1.47695 1.50192 1.55446 1.66148 2.05317 2.52977 2.55707 2.85450 2.99905 3.34273 3.44846 3.64736 3.73138 3.95515 4.01622 4.11070 4.11278 4.14062 4.18733 4.24429 4.46726 4.49191 4.63521 4.69750 4.76237 4.81443 4.82129 4.96171 5.00592 5.07496 5.14855 5.20099 5.44501 5.56220 5.58329 5.63559 5.75612 5.76575 5.79775 6.46592 6.60199 7.21821 7.26598 7.94638 8.45333 9.24607 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017468 B = 0.002187 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.556853 B =12801.389212 C =13514.892688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.160 3.840 3 H 0.027 0.973 4 C -0.125 4.125 5 C 0.160 3.840 6 H 0.079 0.921 7 N -0.709 5.709 8 C 0.519 3.481 9 O -0.583 6.583 10 C -0.136 4.136 11 C 0.086 3.914 12 O -0.392 6.392 13 C 0.018 3.982 14 C 0.461 3.539 15 F -0.185 7.185 16 F -0.176 7.176 17 F -0.188 7.188 18 C -0.142 4.142 19 C 0.188 3.812 20 N -0.602 5.602 21 C -0.247 4.247 22 H 0.074 0.926 23 C -0.052 4.052 24 N -0.935 5.935 25 Si 0.957 3.043 26 H -0.275 1.275 27 H -0.300 1.300 28 H -0.282 1.282 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.408 0.592 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.042 0.958 44 H 0.002 0.998 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.041 8.339 16.144 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 H 0.044 0.956 4 C -0.165 4.165 5 C 0.056 3.944 6 H 0.097 0.903 7 N -0.360 5.360 8 C 0.306 3.694 9 O -0.464 6.464 10 C -0.176 4.176 11 C 0.010 3.990 12 O -0.312 6.312 13 C -0.060 4.060 14 C 0.406 3.594 15 F -0.167 7.167 16 F -0.157 7.157 17 F -0.170 7.170 18 C -0.182 4.182 19 C 0.062 3.938 20 N -0.326 5.326 21 C -0.378 4.378 22 H 0.091 0.909 23 C -0.248 4.248 24 N -0.582 5.582 25 Si 0.786 3.214 26 H -0.201 1.201 27 H -0.227 1.227 28 H -0.208 1.208 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.245 0.755 35 H 0.126 0.874 36 H 0.143 0.857 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.020 0.980 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.426 7.891 16.228 20.840 hybrid contribution -0.237 -0.165 -1.509 1.536 sum 10.190 7.726 14.719 19.498 Atomic orbital electron populations 1.21743 0.94699 1.01343 1.01073 1.20664 0.94230 0.93291 0.86414 0.95567 1.22238 0.92956 1.02389 0.98897 1.20742 0.93739 0.82776 0.97165 0.90287 1.46094 1.14392 1.12307 1.63189 1.20708 0.81522 0.90732 0.76417 1.90669 1.61592 1.46362 1.47826 1.21441 0.96142 0.94235 1.05765 1.22178 0.92802 0.82259 1.01755 1.87788 1.25853 1.32065 1.85456 1.23690 0.86379 0.90717 1.05231 1.20436 0.75414 0.89953 0.73547 1.93196 1.73365 1.73357 1.76768 1.93211 1.36910 1.96856 1.88748 1.93205 1.96141 1.93245 1.34366 1.22368 0.99195 0.99378 0.97241 1.20372 0.83522 0.95740 0.94133 1.44345 1.02649 1.65797 1.19786 1.19432 0.95556 1.36210 0.86572 0.90860 1.25755 0.99095 1.01057 0.98850 1.70155 1.25826 1.45734 1.16448 0.85501 0.78508 0.79107 0.78288 1.20093 1.22696 1.20841 0.90471 0.94188 0.93331 0.90881 0.89102 0.75521 0.87419 0.85689 0.90890 0.92091 0.86002 0.86590 0.93490 0.92209 0.93946 0.98003 0.94569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 7.95 71.98 0.57 -3.66 16 2 C 0.16 5.61 3.20 44.97 0.14 5.75 16 3 H 0.03 0.92 6.64 -2.39 -0.02 0.90 16 4 C -0.13 -3.58 5.07 30.67 0.16 -3.42 16 5 C 0.16 4.93 2.78 45.02 0.13 5.06 16 6 H 0.08 2.40 7.58 -2.39 -0.02 2.39 16 7 N -0.71 -19.54 4.27 -442.40 -1.89 -21.43 16 8 C 0.52 13.97 7.79 87.66 0.68 14.65 16 9 O -0.58 -19.33 15.64 -3.04 -0.05 -19.38 16 10 C -0.14 -2.68 6.07 29.85 0.18 -2.50 16 11 C 0.09 1.59 5.23 71.98 0.38 1.97 16 12 O -0.39 -7.19 10.23 -148.98 -1.52 -8.72 16 13 C 0.02 0.23 5.90 71.98 0.42 0.65 16 14 C 0.46 7.49 3.32 71.98 0.24 7.73 16 15 F -0.19 -3.53 17.26 44.97 0.78 -2.76 16 16 F -0.18 -2.71 17.32 44.97 0.78 -1.93 16 17 F -0.19 -3.83 17.26 44.97 0.78 -3.05 16 18 C -0.14 -5.36 5.77 30.66 0.18 -5.18 16 19 C 0.19 8.69 5.02 86.35 0.43 9.13 16 20 N -0.60 -27.55 2.99 -675.30 -2.02 -29.56 16 21 C -0.25 -12.71 8.58 84.03 0.72 -11.99 16 22 H 0.07 3.64 6.23 -2.91 -0.02 3.62 16 23 C -0.05 -2.85 4.94 84.86 0.42 -2.43 16 24 N -0.93 -54.17 11.23 21.65 0.24 -53.93 16 25 Si 0.96 44.16 29.58 68.60 2.03 46.19 16 26 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 27 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 28 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 29 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.04 1.45 7.67 -2.39 -0.02 1.43 16 31 H 0.05 1.61 7.40 -2.39 -0.02 1.60 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.41 10.49 6.87 -92.71 -0.64 9.85 16 35 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 38 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 39 H 0.12 0.94 8.14 -2.38 -0.02 0.93 16 40 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.04 2.30 6.15 -2.39 -0.01 2.29 16 44 H 0.00 0.09 7.74 -2.39 -0.02 0.07 16 45 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -66.15 372.77 4.16 -61.99 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.38 Total: 16.82 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 4.65 Total: 15.75 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -3.66 Total: -104.92 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -1.57 Total: -28.10 kcal Atomic # 9 Polarization: -10.07 SS G_CDS: 2.33 Total: -7.74 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -66.15 4.16 -61.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281671376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.849 kcal (2) G-P(sol) polarization free energy of solvation -66.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds