Wall clock time and date at job start Tue Mar 31 2020 21:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 120.00149 * 2 1 4 4 O 1.42894 * 109.47409 * 134.99659 * 3 2 1 5 5 C 1.42898 * 113.99969 * 180.02562 * 4 3 2 6 6 H 1.08998 * 110.64125 * 328.30420 * 5 4 3 7 7 C 1.55162 * 110.71876 * 204.97933 * 5 4 3 8 8 C 1.55131 * 101.48725 * 205.97036 * 7 5 4 9 9 N 1.47429 * 104.72041 * 37.28890 * 8 7 5 10 10 C 1.34775 * 125.64441 * 155.82242 * 9 8 7 11 11 O 1.21352 * 119.99992 * 179.69765 * 10 9 8 12 12 C 1.49455 * 120.00050 * 359.68819 * 10 9 8 13 13 O 1.21345 * 120.00259 * 0.02562 * 12 10 9 14 14 N 1.34781 * 119.99537 * 180.02562 * 12 10 9 15 15 C 1.47419 * 125.65221 * 359.97438 * 14 12 10 16 16 C 1.54905 * 104.92834 * 155.83963 * 15 14 12 17 17 C 1.55448 * 101.45165 * 37.00468 * 16 15 14 18 18 O 1.42902 * 110.70640 * 82.89214 * 17 16 15 19 19 C 1.50698 * 110.86030 * 206.07558 * 17 16 15 20 20 H 1.08005 * 120.00217 * 355.08512 * 19 17 16 21 21 C 1.37880 * 119.99984 * 175.09174 * 19 17 16 22 22 N 1.31517 * 120.00050 * 359.97438 * 21 19 17 23 23 Si 1.86804 * 119.99863 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47216 * 60.00088 * 23 21 19 25 25 H 1.48499 * 109.46652 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47063 * 299.99453 * 23 21 19 27 27 C 1.47026 * 125.64203 * 180.02562 * 14 12 10 28 28 C 1.47017 * 108.70698 * 335.55758 * 9 8 7 29 29 H 1.08001 * 120.00151 * 180.02562 * 1 2 3 30 30 H 1.08003 * 119.99969 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99446 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47057 * 14.99244 * 3 2 1 33 33 H 1.09002 * 109.47015 * 254.99948 * 3 2 1 34 34 H 1.09008 * 111.00094 * 324.20242 * 7 5 4 35 35 H 1.08995 * 111.00792 * 88.01735 * 7 5 4 36 36 H 1.09007 * 110.49355 * 278.45281 * 8 7 5 37 37 H 1.08994 * 110.34713 * 156.05601 * 8 7 5 38 38 H 1.09002 * 110.36926 * 274.73432 * 15 14 12 39 39 H 1.08995 * 110.36556 * 36.94716 * 15 14 12 40 40 H 1.09002 * 111.00852 * 155.13877 * 16 15 14 41 41 H 1.09004 * 111.00578 * 278.99532 * 16 15 14 42 42 H 0.96693 * 114.00073 * 185.00084 * 18 17 16 43 43 H 0.97000 * 119.99969 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.88266 * 300.45023 * 27 14 12 45 45 H 1.08997 * 109.88244 * 61.46381 * 27 14 12 46 46 H 1.08997 * 109.88316 * 120.70140 * 28 9 8 47 47 H 1.08998 * 109.88456 * 241.87179 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9076 2.4353 1.0328 6 1 3.9503 2.9323 0.0637 7 6 5.3343 2.1239 1.5574 8 6 5.7326 3.4814 2.1939 9 7 4.4901 3.9872 2.8055 10 6 4.4178 4.8609 3.8292 11 8 3.3358 5.2136 4.2505 12 6 5.6701 5.3951 4.4456 13 8 6.7520 5.0427 4.0242 14 7 5.5976 6.2684 5.4697 15 6 4.3552 6.7792 6.0771 16 6 4.7569 7.2010 7.5125 17 6 6.1804 7.7796 7.2772 18 8 6.1075 9.1356 6.8324 19 6 7.0156 7.6746 8.5271 20 1 6.5730 7.3135 9.4437 21 6 8.3449 8.0399 8.5007 22 7 8.8841 8.4793 7.3845 23 14 9.3801 7.9105 10.0503 24 1 9.4049 6.4996 10.5126 25 1 10.7649 8.3610 9.7594 26 1 8.7934 8.7688 11.1106 27 6 6.7446 6.8702 6.1653 28 6 3.3432 3.3858 2.1097 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8499 -0.9354 0.0004 32 1 1.3855 2.1161 0.2659 33 1 2.4756 1.4867 -0.9927 34 1 5.3113 1.3302 2.3043 35 1 6.0046 1.8665 0.7374 36 1 6.0873 4.1721 1.4289 37 1 6.4974 3.3327 2.9561 38 1 3.9854 7.6390 5.5185 39 1 3.5988 5.9951 6.1098 40 1 4.0816 7.9644 7.8988 41 1 4.7908 6.3385 8.1781 42 1 6.9635 9.5193 6.5980 43 1 9.8193 8.7359 7.3658 44 1 7.3636 6.0881 6.6048 45 1 7.3352 7.4603 5.4645 46 1 2.7334 2.8239 2.8172 47 1 2.7447 4.1656 1.6388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329454137.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:33 Heat of formation + Delta-G solvation = -141.305234 kcal Electronic energy + Delta-G solvation = -29755.580502 eV Core-core repulsion = 25517.969172 eV Total energy + Delta-G solvation = -4237.611329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.01549 -40.54337 -39.46035 -38.92389 -37.75017 -36.11004 -34.70397 -34.24694 -32.09992 -31.89873 -30.04281 -29.65692 -27.79602 -27.00621 -25.73777 -24.22344 -23.05846 -22.06260 -21.47235 -20.85321 -20.35959 -19.12808 -18.51292 -18.41603 -18.02658 -17.42249 -17.13312 -16.74081 -16.64628 -16.43442 -16.15433 -15.70056 -15.29416 -14.86868 -14.82537 -14.80378 -14.64770 -14.37913 -14.06365 -13.83594 -13.71499 -13.53678 -13.41349 -13.25239 -13.05952 -12.85754 -12.67883 -12.63122 -12.41972 -12.36544 -12.30048 -12.06919 -11.84184 -11.66608 -11.18982 -10.93378 -10.71474 -10.50874 -10.31057 -10.23910 -10.03422 -9.71336 -8.27334 -6.43021 0.26699 1.05868 1.26014 1.44067 1.44525 1.52419 2.03368 2.24858 2.39012 2.76511 2.98559 3.05325 3.44582 3.47356 3.76165 3.93856 4.01805 4.04318 4.13271 4.20341 4.21564 4.31824 4.33041 4.42250 4.53422 4.58706 4.60779 4.67196 4.68628 4.79927 4.87167 4.94580 4.99217 5.02721 5.07026 5.08528 5.16279 5.29248 5.43072 5.67849 5.71565 5.73689 5.92932 6.02585 6.19269 6.26006 6.47630 6.64462 6.84646 7.26156 7.34125 8.78918 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.025687 B = 0.002230 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.780480 B =12554.781731 C =13029.739839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.171 4.171 3 C 0.079 3.921 4 O -0.382 6.382 5 C 0.087 3.913 6 H 0.111 0.889 7 C -0.119 4.119 8 C 0.093 3.907 9 N -0.587 5.587 10 C 0.526 3.474 11 O -0.534 6.534 12 C 0.506 3.494 13 O -0.548 6.548 14 N -0.585 5.585 15 C 0.108 3.892 16 C -0.114 4.114 17 C 0.234 3.766 18 O -0.587 6.587 19 C -0.558 4.558 20 H 0.067 0.933 21 C 0.028 3.972 22 N -0.914 5.914 23 Si 0.964 3.036 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.121 3.879 28 C 0.081 3.919 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.376 0.624 43 H 0.271 0.729 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.071 0.929 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.808 -14.222 -16.398 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.189 4.189 3 C 0.004 3.996 4 O -0.301 6.301 5 C 0.028 3.972 6 H 0.128 0.872 7 C -0.156 4.156 8 C -0.029 4.029 9 N -0.322 5.322 10 C 0.309 3.691 11 O -0.411 6.411 12 C 0.289 3.711 13 O -0.428 6.428 14 N -0.317 5.317 15 C -0.013 4.013 16 C -0.152 4.152 17 C 0.193 3.807 18 O -0.395 6.395 19 C -0.596 4.596 20 H 0.085 0.915 21 C -0.173 4.173 22 N -0.552 5.552 23 Si 0.789 3.211 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.195 1.195 27 C -0.001 4.001 28 C -0.041 4.041 29 H 0.133 0.867 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.139 0.861 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.103 0.897 42 H 0.226 0.774 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.090 0.910 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.268 -14.412 -16.262 24.953 hybrid contribution 1.452 0.521 0.646 1.673 sum -10.816 -13.891 -15.617 23.533 Atomic orbital electron populations 1.24064 0.95439 1.03252 0.98339 1.22804 0.96076 0.98141 1.01867 1.21823 0.88718 0.96394 0.92691 1.87982 1.45104 1.35523 1.61461 1.23132 0.90812 0.85370 0.97847 0.87172 1.22966 0.94838 0.95714 1.02115 1.22864 0.86189 0.95346 0.98461 1.48157 1.10827 1.41873 1.31310 1.19557 0.88699 0.80142 0.80672 1.90687 1.29744 1.59136 1.61552 1.19994 0.89696 0.80442 0.80932 1.90656 1.30341 1.59280 1.62483 1.48731 1.11061 1.40817 1.31126 1.22615 0.85709 0.99550 0.93449 1.22865 0.96188 1.00870 0.95252 1.19772 0.92315 0.79120 0.89453 1.86120 1.36202 1.28859 1.88282 1.21751 0.95570 1.45524 0.96738 0.91459 1.25796 0.98805 0.93335 0.99393 1.69781 1.14449 1.43562 1.27446 0.85510 0.77384 0.78645 0.79521 1.19746 1.20825 1.19523 1.22739 0.86839 0.96158 0.94343 1.22723 0.88429 0.97250 0.95681 0.86726 0.87728 0.86659 0.92053 0.90365 0.90105 0.86061 0.89381 0.89466 0.91343 0.88135 0.89028 0.89669 0.77418 0.91919 0.93456 0.93605 0.91030 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 14.31 67.78 0.97 -0.77 16 2 C -0.17 -2.07 9.89 25.64 0.25 -1.81 16 3 C 0.08 0.95 6.22 71.23 0.44 1.39 16 4 O -0.38 -6.31 10.05 -148.98 -1.50 -7.81 16 5 C 0.09 1.29 3.40 31.79 0.11 1.40 16 6 H 0.11 1.07 7.88 -2.39 -0.02 1.05 16 7 C -0.12 -1.83 6.82 32.07 0.22 -1.62 16 8 C 0.09 2.09 6.08 86.93 0.53 2.62 16 9 N -0.59 -15.97 3.32 -812.92 -2.70 -18.68 16 10 C 0.53 18.33 7.88 87.27 0.69 19.02 16 11 O -0.53 -19.73 14.10 -3.25 -0.05 -19.78 16 12 C 0.51 20.57 7.88 87.27 0.69 21.25 16 13 O -0.55 -23.57 14.10 -3.23 -0.05 -23.62 16 14 N -0.58 -25.30 3.33 -813.38 -2.71 -28.00 16 15 C 0.11 4.22 6.05 86.85 0.53 4.74 16 16 C -0.11 -4.66 6.26 32.09 0.20 -4.46 16 17 C 0.23 11.46 0.85 -10.25 -0.01 11.45 16 18 O -0.59 -29.87 13.08 -148.98 -1.95 -31.82 16 19 C -0.56 -29.19 8.13 25.60 0.21 -28.98 16 20 H 0.07 3.43 7.78 -2.91 -0.02 3.41 16 21 C 0.03 1.45 5.28 84.66 0.45 1.90 16 22 N -0.91 -48.72 10.96 21.45 0.24 -48.48 16 23 Si 0.96 41.63 29.54 68.60 2.03 43.65 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 C 0.12 5.98 5.23 86.73 0.45 6.44 16 28 C 0.08 1.69 6.64 86.73 0.58 2.26 16 29 H 0.11 0.88 8.06 -2.91 -0.02 0.85 16 30 H 0.10 0.90 7.90 -2.91 -0.02 0.88 16 31 H 0.12 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.06 0.67 7.86 -2.38 -0.02 0.65 16 33 H 0.08 0.66 8.11 -2.39 -0.02 0.64 16 34 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.09 2.42 6.14 -2.39 -0.01 2.40 16 38 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.10 3.65 6.15 -2.39 -0.01 3.64 16 40 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 41 H 0.08 3.32 8.05 -2.38 -0.02 3.30 16 42 H 0.38 19.68 7.45 -74.06 -0.55 19.13 16 43 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 44 H 0.05 2.53 7.81 -2.39 -0.02 2.51 16 45 H 0.05 2.45 7.92 -2.39 -0.02 2.43 16 46 H 0.07 1.67 8.06 -2.39 -0.02 1.65 16 47 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -63.57 385.12 0.04 -63.53 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: 0.43 Total: 36.16 kcal Atomic # 6 Polarization: 28.55 SS G_CDS: 6.30 Total: 34.85 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -5.17 Total: -95.16 kcal Atomic # 8 Polarization: -79.49 SS G_CDS: -3.54 Total: -83.02 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -63.57 0.04 -63.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329454137.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.775 kcal (2) G-P(sol) polarization free energy of solvation -63.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds