Wall clock time and date at job start Tue Mar 31 2020 21:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 120.00115 * 2 1 4 4 O 1.42898 * 109.46762 * 134.99943 * 3 2 1 5 5 C 1.42905 * 113.99780 * 180.02562 * 4 3 2 6 6 H 1.08994 * 110.88771 * 333.88566 * 5 4 3 7 7 C 1.55150 * 111.00482 * 209.99967 * 5 4 3 8 8 C 1.54329 * 102.94319 * 206.38745 * 7 5 4 9 9 N 1.47024 * 107.27029 * 22.19253 * 8 7 5 10 10 C 1.34770 * 125.64495 * 181.01709 * 9 8 7 11 11 O 1.21353 * 119.99586 * 180.02562 * 10 9 8 12 12 C 1.49446 * 120.00424 * 0.03588 * 10 9 8 13 13 O 1.21353 * 119.99990 * 359.97438 * 12 10 9 14 14 N 1.34781 * 120.00079 * 179.97438 * 12 10 9 15 15 C 1.47417 * 125.64806 * 0.03332 * 14 12 10 16 16 C 1.54907 * 104.83364 * 204.09369 * 15 14 12 17 17 C 1.55157 * 101.58392 * 322.99571 * 16 15 14 18 18 O 1.42905 * 110.71700 * 277.13783 * 17 16 15 19 19 C 1.50696 * 110.87516 * 153.93291 * 17 16 15 20 20 H 1.08005 * 119.99798 * 2.54754 * 19 17 16 21 21 C 1.37882 * 120.00166 * 182.54285 * 19 17 16 22 22 N 1.31515 * 119.99699 * 0.02562 * 21 19 17 23 23 Si 1.86792 * 119.99897 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47363 * 60.00608 * 23 21 19 25 25 H 1.48500 * 109.47201 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47363 * 300.00235 * 23 21 19 27 27 C 1.47030 * 125.64714 * 179.97438 * 14 12 10 28 28 C 1.47422 * 108.70342 * 1.29155 * 9 8 7 29 29 H 1.07998 * 119.99790 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99767 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.00194 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.46818 * 15.00650 * 3 2 1 33 33 H 1.08996 * 109.47382 * 255.00111 * 3 2 1 34 34 H 1.09001 * 110.72090 * 88.02480 * 7 5 4 35 35 H 1.08994 * 110.72314 * 324.75189 * 7 5 4 36 36 H 1.09000 * 109.88236 * 262.77418 * 8 7 5 37 37 H 1.09002 * 110.00994 * 141.68801 * 8 7 5 38 38 H 1.08996 * 110.37128 * 322.93529 * 15 14 12 39 39 H 1.09010 * 110.36651 * 85.25925 * 15 14 12 40 40 H 1.09001 * 111.00776 * 204.91958 * 16 15 14 41 41 H 1.09006 * 111.00095 * 81.06690 * 16 15 14 42 42 H 0.96696 * 114.00036 * 174.97413 * 18 17 16 43 43 H 0.97002 * 119.99851 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.87901 * 59.55702 * 27 14 12 45 45 H 1.08996 * 110.00691 * 298.46583 * 27 14 12 46 46 H 1.08995 * 110.36997 * 94.47723 * 28 9 8 47 47 H 1.08994 * 110.36837 * 216.80652 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9078 2.4352 1.0329 6 1 3.8726 2.9865 0.0933 7 6 5.3717 2.1162 1.4360 8 6 5.8348 3.4211 2.1174 9 7 4.6281 4.1329 2.5632 10 6 4.6061 5.3272 3.1873 11 8 3.5470 5.8228 3.5117 12 6 5.8860 6.0412 3.4796 13 8 6.9451 5.5455 3.1554 14 7 5.8640 7.2358 4.1033 15 6 4.6540 7.9491 4.5510 16 6 5.0717 9.4396 4.6109 17 6 6.5318 9.3337 5.1248 18 8 6.5588 9.2054 6.5478 19 6 7.3442 10.5236 4.6832 20 1 6.8755 11.3198 4.1239 21 6 8.6858 10.5958 4.9931 22 7 9.2565 9.6259 5.6738 23 14 9.6929 12.0704 4.4450 24 1 9.1213 13.3073 5.0355 25 1 11.0971 11.9075 4.8998 26 1 9.6611 12.1686 2.9636 27 6 7.0428 8.0428 4.4510 28 6 3.4464 3.3208 2.2203 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3856 2.1161 0.2661 33 1 2.4756 1.4868 -0.9926 34 1 5.9772 1.9054 0.5545 35 1 5.4056 1.2821 2.1369 36 1 6.3860 4.0356 1.4056 37 1 6.4671 3.1901 2.9748 38 1 3.8448 7.8104 3.8342 39 1 4.3514 7.6000 5.5384 40 1 4.4489 9.9920 5.3146 41 1 5.0380 9.8948 3.6210 42 1 7.4421 9.0587 6.9128 43 1 10.2003 9.6769 5.8922 44 1 7.6008 8.2919 3.5483 45 1 7.6816 7.4919 5.1412 46 1 3.1534 2.7007 3.0674 47 1 2.6203 3.9629 1.9153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329454138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:36 Heat of formation + Delta-G solvation = -121.723416 kcal Electronic energy + Delta-G solvation = -29714.660273 eV Core-core repulsion = 25477.898075 eV Total energy + Delta-G solvation = -4236.762198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.64825 -39.31728 -38.24452 -37.25243 -36.77896 -34.38343 -34.07960 -32.22900 -31.16042 -30.16442 -29.06440 -27.92717 -26.59779 -25.81609 -24.35922 -22.80479 -21.80381 -21.15561 -20.33748 -19.63499 -18.97284 -17.70127 -17.20751 -17.11309 -16.55836 -16.23369 -15.86455 -15.44444 -15.17034 -15.03749 -14.81740 -14.53980 -14.27153 -13.84098 -13.47125 -13.20075 -13.08795 -13.01583 -12.95077 -12.76477 -12.61750 -12.33158 -12.04462 -11.95524 -11.76412 -11.52441 -11.38569 -11.08450 -11.01786 -10.96172 -10.74330 -10.59395 -10.51494 -10.26348 -10.17163 -9.75244 -9.36246 -9.09460 -8.84859 -8.67850 -8.35454 -8.01943 -6.31663 -4.39887 1.70167 1.74657 2.38385 3.21091 3.26662 3.28484 3.31188 3.54645 3.73789 4.15100 4.25308 4.31404 4.48039 4.62631 4.63446 4.70652 4.90458 4.96530 5.03345 5.08498 5.10170 5.35032 5.41558 5.49464 5.54351 5.60188 5.73264 5.81483 5.85254 5.88374 6.01974 6.06575 6.12018 6.20663 6.29066 6.49581 6.74354 6.78093 6.79668 6.82169 7.14857 7.18090 7.30236 7.70132 7.74757 7.98542 8.01347 8.41662 8.63424 9.27818 9.37706 10.76394 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.026879 B = 0.002198 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.445202 B =12733.626633 C =13216.472968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.153 4.153 3 C 0.085 3.915 4 O -0.366 6.366 5 C 0.075 3.925 6 H 0.083 0.917 7 C -0.131 4.131 8 C 0.110 3.890 9 N -0.596 5.596 10 C 0.526 3.474 11 O -0.517 6.517 12 C 0.510 3.490 13 O -0.533 6.533 14 N -0.575 5.575 15 C 0.099 3.901 16 C -0.120 4.120 17 C 0.248 3.752 18 O -0.583 6.583 19 C -0.537 4.537 20 H 0.067 0.933 21 C 0.070 3.930 22 N -0.896 5.896 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 C 0.100 3.900 28 C 0.088 3.912 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.383 0.617 43 H 0.271 0.729 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.763 -16.416 -10.702 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.171 4.171 3 C 0.009 3.991 4 O -0.284 6.284 5 C 0.016 3.984 6 H 0.101 0.899 7 C -0.169 4.169 8 C -0.012 4.012 9 N -0.333 5.333 10 C 0.310 3.690 11 O -0.392 6.392 12 C 0.292 3.708 13 O -0.412 6.412 14 N -0.307 5.307 15 C -0.024 4.024 16 C -0.158 4.158 17 C 0.207 3.793 18 O -0.392 6.392 19 C -0.575 4.575 20 H 0.085 0.915 21 C -0.133 4.133 22 N -0.535 5.535 23 Si 0.733 3.267 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 C -0.021 4.021 28 C -0.035 4.035 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.234 0.766 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.188 -16.513 -10.558 23.081 hybrid contribution 1.217 0.759 -0.347 1.475 sum -10.972 -15.754 -10.905 22.080 Atomic orbital electron populations 1.23878 0.95596 1.02414 0.99655 1.22726 0.95636 0.98099 1.00618 1.21668 0.88994 0.96119 0.92351 1.87953 1.44443 1.35445 1.60606 1.23286 0.91445 0.86111 0.97520 0.89926 1.22852 0.94050 0.98114 1.01877 1.22178 0.87010 0.91689 1.00338 1.48049 1.08926 1.18606 1.57707 1.20183 0.90295 0.80349 0.78171 1.90707 1.32395 1.65017 1.51094 1.19399 0.88660 0.81968 0.80822 1.90710 1.31581 1.65860 1.53025 1.48682 1.11607 1.17258 1.53200 1.22641 0.87086 0.92493 1.00149 1.22819 0.97936 0.93765 1.01323 1.19514 0.90312 0.90147 0.79282 1.86122 1.35802 1.95425 1.21872 1.21473 0.94097 1.05438 1.36470 0.91457 1.25079 0.97737 0.96469 0.93994 1.69633 1.12970 1.32104 1.38766 0.86432 0.78766 0.82419 0.79126 1.19954 1.21073 1.20035 1.23252 0.85590 0.92497 1.00725 1.22715 0.88872 0.93673 0.98243 0.87729 0.88316 0.86515 0.92456 0.92030 0.89198 0.89297 0.89851 0.89746 0.89581 0.91354 0.90278 0.90494 0.76597 0.91875 0.90952 0.91103 0.90037 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 14.31 29.01 0.42 -0.61 16 2 C -0.15 -1.03 9.89 -36.02 -0.36 -1.38 16 3 C 0.08 0.61 6.19 36.01 0.22 0.83 16 4 O -0.37 -3.37 10.14 -35.23 -0.36 -3.73 16 5 C 0.08 0.67 3.56 -24.46 -0.09 0.59 16 6 H 0.08 0.65 7.83 -51.93 -0.41 0.24 16 7 C -0.13 -1.14 6.68 -24.90 -0.17 -1.31 16 8 C 0.11 1.32 5.49 -3.06 -0.02 1.30 16 9 N -0.60 -8.34 3.32 -170.88 -0.57 -8.91 16 10 C 0.53 9.17 7.88 -11.59 -0.09 9.08 16 11 O -0.52 -9.61 14.03 5.49 0.08 -9.54 16 12 C 0.51 10.20 7.88 -11.58 -0.09 10.11 16 13 O -0.53 -11.26 14.45 5.49 0.08 -11.18 16 14 N -0.58 -12.21 3.33 -171.03 -0.57 -12.78 16 15 C 0.10 1.93 6.05 -2.53 -0.02 1.91 16 16 C -0.12 -2.48 6.23 -24.58 -0.15 -2.63 16 17 C 0.25 6.00 0.85 -89.94 -0.08 5.92 16 18 O -0.58 -14.69 13.07 -35.23 -0.46 -15.15 16 19 C -0.54 -13.89 8.12 -34.44 -0.28 -14.17 16 20 H 0.07 1.71 7.78 -52.48 -0.41 1.30 16 21 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 22 N -0.90 -23.46 10.98 55.43 0.61 -22.85 16 23 Si 0.91 20.23 29.54 -169.99 -5.02 15.21 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 27 C 0.10 2.39 5.37 -3.06 -0.02 2.37 16 28 C 0.09 0.98 6.65 -2.41 -0.02 0.97 16 29 H 0.10 0.47 8.06 -52.49 -0.42 0.05 16 30 H 0.10 0.51 7.90 -52.49 -0.41 0.09 16 31 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.06 0.38 7.86 -51.93 -0.41 -0.02 16 33 H 0.06 0.37 8.12 -51.93 -0.42 -0.05 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.05 7.58 -51.93 -0.39 0.65 16 37 H 0.08 1.09 7.69 -51.93 -0.40 0.69 16 38 H 0.09 1.59 6.16 -51.93 -0.32 1.27 16 39 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 40 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 42 H 0.38 9.82 7.26 45.56 0.33 10.15 16 43 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 44 H 0.07 1.84 7.81 -51.93 -0.41 1.44 16 45 H 0.07 1.81 7.98 -51.93 -0.41 1.40 16 46 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.08 0.92 8.03 -51.93 -0.42 0.50 16 LS Contribution 385.79 15.07 5.81 5.81 Total: -1.00 -29.27 385.79 -7.81 -37.08 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -6.59 Total: 11.34 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: -0.82 Total: 14.70 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.53 Total: -44.55 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -0.66 Total: -39.60 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.27 -7.81 -37.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329454138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.647 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds