Wall clock time and date at job start Tue Mar 31 2020 21:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50706 * 120.00115 * 2 1 4 4 O 1.42898 * 109.46762 * 134.99943 * 3 2 1 5 5 C 1.42905 * 113.99780 * 180.02562 * 4 3 2 6 6 H 1.08994 * 110.88771 * 333.88566 * 5 4 3 7 7 C 1.55150 * 111.00482 * 209.99967 * 5 4 3 8 8 C 1.54329 * 102.94319 * 206.38745 * 7 5 4 9 9 N 1.47024 * 107.27029 * 22.19253 * 8 7 5 10 10 C 1.34770 * 125.64495 * 181.01709 * 9 8 7 11 11 O 1.21353 * 119.99586 * 180.02562 * 10 9 8 12 12 C 1.49446 * 120.00424 * 0.03588 * 10 9 8 13 13 O 1.21353 * 119.99990 * 359.97438 * 12 10 9 14 14 N 1.34781 * 120.00079 * 179.97438 * 12 10 9 15 15 C 1.47417 * 125.64806 * 0.03332 * 14 12 10 16 16 C 1.54907 * 104.83364 * 204.09369 * 15 14 12 17 17 C 1.55157 * 101.58392 * 322.99571 * 16 15 14 18 18 O 1.42905 * 110.71700 * 277.13783 * 17 16 15 19 19 C 1.50696 * 110.87516 * 153.93291 * 17 16 15 20 20 H 1.08005 * 119.99798 * 2.54754 * 19 17 16 21 21 C 1.37882 * 120.00166 * 182.54285 * 19 17 16 22 22 N 1.31515 * 119.99699 * 0.02562 * 21 19 17 23 23 Si 1.86792 * 119.99897 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47363 * 60.00608 * 23 21 19 25 25 H 1.48500 * 109.47201 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47363 * 300.00235 * 23 21 19 27 27 C 1.47030 * 125.64714 * 179.97438 * 14 12 10 28 28 C 1.47422 * 108.70342 * 1.29155 * 9 8 7 29 29 H 1.07998 * 119.99790 * 179.97438 * 1 2 3 30 30 H 1.07998 * 119.99767 * 0.02562 * 1 2 3 31 31 H 1.08003 * 120.00194 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.46818 * 15.00650 * 3 2 1 33 33 H 1.08996 * 109.47382 * 255.00111 * 3 2 1 34 34 H 1.09001 * 110.72090 * 88.02480 * 7 5 4 35 35 H 1.08994 * 110.72314 * 324.75189 * 7 5 4 36 36 H 1.09000 * 109.88236 * 262.77418 * 8 7 5 37 37 H 1.09002 * 110.00994 * 141.68801 * 8 7 5 38 38 H 1.08996 * 110.37128 * 322.93529 * 15 14 12 39 39 H 1.09010 * 110.36651 * 85.25925 * 15 14 12 40 40 H 1.09001 * 111.00776 * 204.91958 * 16 15 14 41 41 H 1.09006 * 111.00095 * 81.06690 * 16 15 14 42 42 H 0.96696 * 114.00036 * 174.97413 * 18 17 16 43 43 H 0.97002 * 119.99851 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.87901 * 59.55702 * 27 14 12 45 45 H 1.08996 * 110.00691 * 298.46583 * 27 14 12 46 46 H 1.08995 * 110.36997 * 94.47723 * 28 9 8 47 47 H 1.08994 * 110.36837 * 216.80652 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9078 2.4352 1.0329 6 1 3.8726 2.9865 0.0933 7 6 5.3717 2.1162 1.4360 8 6 5.8348 3.4211 2.1174 9 7 4.6281 4.1329 2.5632 10 6 4.6061 5.3272 3.1873 11 8 3.5470 5.8228 3.5117 12 6 5.8860 6.0412 3.4796 13 8 6.9451 5.5455 3.1554 14 7 5.8640 7.2358 4.1033 15 6 4.6540 7.9491 4.5510 16 6 5.0717 9.4396 4.6109 17 6 6.5318 9.3337 5.1248 18 8 6.5588 9.2054 6.5478 19 6 7.3442 10.5236 4.6832 20 1 6.8755 11.3198 4.1239 21 6 8.6858 10.5958 4.9931 22 7 9.2565 9.6259 5.6738 23 14 9.6929 12.0704 4.4450 24 1 9.1213 13.3073 5.0355 25 1 11.0971 11.9075 4.8998 26 1 9.6611 12.1686 2.9636 27 6 7.0428 8.0428 4.4510 28 6 3.4464 3.3208 2.2203 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3856 2.1161 0.2661 33 1 2.4756 1.4868 -0.9926 34 1 5.9772 1.9054 0.5545 35 1 5.4056 1.2821 2.1369 36 1 6.3860 4.0356 1.4056 37 1 6.4671 3.1901 2.9748 38 1 3.8448 7.8104 3.8342 39 1 4.3514 7.6000 5.5384 40 1 4.4489 9.9920 5.3146 41 1 5.0380 9.8948 3.6210 42 1 7.4421 9.0587 6.9128 43 1 10.2003 9.6769 5.8922 44 1 7.6008 8.2919 3.5483 45 1 7.6816 7.4919 5.1412 46 1 3.1534 2.7007 3.0674 47 1 2.6203 3.9629 1.9153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329454138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:35 Heat of formation + Delta-G solvation = -142.215303 kcal Electronic energy + Delta-G solvation = -29715.548868 eV Core-core repulsion = 25477.898075 eV Total energy + Delta-G solvation = -4237.650793 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.01421 -40.54256 -39.45431 -38.91899 -37.78337 -36.11714 -34.70702 -34.22156 -32.12967 -31.90741 -30.05299 -29.67219 -27.79747 -26.98425 -25.74884 -24.24507 -22.94928 -22.18795 -21.46803 -20.85235 -20.32794 -19.14593 -18.50716 -18.42726 -18.05402 -17.45468 -17.12113 -16.69663 -16.63988 -16.24305 -16.16739 -15.67870 -15.47765 -14.86927 -14.82360 -14.72108 -14.70977 -14.41374 -14.08331 -13.89995 -13.72023 -13.52785 -13.41936 -13.33841 -12.97161 -12.85273 -12.68530 -12.60326 -12.41417 -12.35881 -12.29524 -12.06225 -11.86376 -11.70532 -11.21688 -10.91479 -10.72361 -10.53600 -10.31368 -10.24682 -10.03991 -9.70672 -8.27526 -6.43042 0.26052 1.03651 1.26847 1.44158 1.44648 1.52610 2.02700 2.22502 2.38781 2.76100 2.98262 3.04099 3.43933 3.50651 3.77434 3.89626 4.02647 4.04286 4.13418 4.17675 4.20488 4.28845 4.32981 4.43987 4.50578 4.58484 4.61476 4.68253 4.69720 4.78334 4.86578 4.93629 4.99762 5.02009 5.06878 5.08198 5.13825 5.29466 5.42498 5.68246 5.72092 5.74105 5.91869 6.02258 6.16354 6.25756 6.46031 6.64222 6.84276 7.27071 7.35230 8.78992 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.026879 B = 0.002198 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.445202 B =12733.626633 C =13216.472968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.170 4.170 3 C 0.079 3.921 4 O -0.376 6.376 5 C 0.085 3.915 6 H 0.100 0.900 7 C -0.119 4.119 8 C 0.106 3.894 9 N -0.588 5.588 10 C 0.529 3.471 11 O -0.531 6.531 12 C 0.505 3.495 13 O -0.549 6.549 14 N -0.585 5.585 15 C 0.109 3.891 16 C -0.114 4.114 17 C 0.233 3.767 18 O -0.588 6.588 19 C -0.557 4.557 20 H 0.068 0.932 21 C 0.028 3.972 22 N -0.915 5.915 23 Si 0.965 3.035 24 H -0.270 1.270 25 H -0.283 1.283 26 H -0.272 1.272 27 C 0.119 3.881 28 C 0.084 3.916 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.377 0.623 43 H 0.272 0.728 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.082 0.918 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.967 -17.157 -12.233 24.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.188 4.188 3 C 0.004 3.996 4 O -0.295 6.295 5 C 0.026 3.974 6 H 0.118 0.882 7 C -0.156 4.156 8 C -0.016 4.016 9 N -0.323 5.323 10 C 0.312 3.688 11 O -0.409 6.409 12 C 0.288 3.712 13 O -0.428 6.428 14 N -0.317 5.317 15 C -0.013 4.013 16 C -0.152 4.152 17 C 0.193 3.807 18 O -0.396 6.396 19 C -0.595 4.595 20 H 0.086 0.914 21 C -0.174 4.174 22 N -0.554 5.554 23 Si 0.790 3.210 24 H -0.195 1.195 25 H -0.209 1.209 26 H -0.197 1.197 27 C -0.003 4.003 28 C -0.038 4.038 29 H 0.134 0.866 30 H 0.122 0.878 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.227 0.773 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.100 0.900 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.418 -17.298 -12.113 25.020 hybrid contribution 1.571 0.879 0.109 1.803 sum -11.847 -16.419 -12.004 23.538 Atomic orbital electron populations 1.24066 0.95422 1.03265 0.98260 1.22786 0.96044 0.98020 1.01930 1.21834 0.88683 0.96538 0.92572 1.87946 1.44986 1.35192 1.61363 1.23207 0.91168 0.85921 0.97078 0.88248 1.22809 0.94246 0.96022 1.02545 1.22306 0.86333 0.93053 0.99953 1.48101 1.10918 1.17477 1.55767 1.19543 0.88712 0.81416 0.79170 1.90690 1.32077 1.65814 1.52313 1.20002 0.89773 0.81527 0.79883 1.90691 1.32667 1.66133 1.53315 1.48710 1.11185 1.17874 1.53970 1.22627 0.86688 0.91473 1.00509 1.22819 0.95661 0.94794 1.01878 1.19724 0.92545 0.89755 0.78679 1.86112 1.35366 1.95448 1.22694 1.21766 0.94795 1.06113 1.36859 0.91359 1.25803 0.98705 0.98812 0.94034 1.69733 1.13094 1.33332 1.39251 0.85496 0.77285 0.79467 0.78724 1.19506 1.20873 1.19680 1.22769 0.86086 0.92640 0.98825 1.22943 0.87795 0.93636 0.99409 0.86628 0.87789 0.86513 0.92049 0.90725 0.86776 0.88896 0.90429 0.91018 0.87919 0.91503 0.89105 0.89527 0.77271 0.91892 0.93315 0.93821 0.90024 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 14.31 67.78 0.97 -0.68 16 2 C -0.17 -1.97 9.89 25.65 0.25 -1.71 16 3 C 0.08 0.96 6.19 71.24 0.44 1.40 16 4 O -0.38 -6.00 10.14 -148.98 -1.51 -7.51 16 5 C 0.09 1.30 3.56 32.06 0.11 1.41 16 6 H 0.10 1.23 7.83 -2.39 -0.02 1.21 16 7 C -0.12 -1.78 6.68 31.78 0.21 -1.56 16 8 C 0.11 2.41 5.49 86.73 0.48 2.89 16 9 N -0.59 -15.79 3.32 -812.92 -2.70 -18.50 16 10 C 0.53 18.12 7.88 87.27 0.69 18.81 16 11 O -0.53 -19.23 14.03 -3.25 -0.05 -19.28 16 12 C 0.50 20.38 7.88 87.27 0.69 21.07 16 13 O -0.55 -23.60 14.45 -3.25 -0.05 -23.65 16 14 N -0.58 -25.13 3.33 -813.37 -2.71 -27.83 16 15 C 0.11 4.19 6.05 86.86 0.53 4.71 16 16 C -0.11 -4.61 6.23 31.99 0.20 -4.41 16 17 C 0.23 11.43 0.85 -10.35 -0.01 11.42 16 18 O -0.59 -30.15 13.07 -148.98 -1.95 -32.10 16 19 C -0.56 -29.06 8.12 25.60 0.21 -28.85 16 20 H 0.07 3.46 7.78 -2.91 -0.02 3.44 16 21 C 0.03 1.43 5.28 84.66 0.45 1.87 16 22 N -0.91 -48.84 10.98 21.45 0.24 -48.60 16 23 Si 0.97 41.48 29.54 68.60 2.03 43.51 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 27 C 0.12 5.85 5.37 86.73 0.47 6.32 16 28 C 0.08 1.73 6.65 86.94 0.58 2.31 16 29 H 0.12 0.81 8.06 -2.91 -0.02 0.79 16 30 H 0.10 0.86 7.90 -2.91 -0.02 0.83 16 31 H 0.12 1.31 8.06 -2.91 -0.02 1.29 16 32 H 0.06 0.68 7.86 -2.39 -0.02 0.66 16 33 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 34 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.89 7.58 -2.39 -0.02 1.87 16 37 H 0.07 1.84 7.69 -2.39 -0.02 1.82 16 38 H 0.10 3.65 6.16 -2.39 -0.01 3.63 16 39 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 40 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 41 H 0.09 3.32 8.04 -2.38 -0.02 3.30 16 42 H 0.38 19.96 7.26 -74.06 -0.54 19.42 16 43 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.05 2.57 7.81 -2.39 -0.02 2.56 16 45 H 0.04 2.34 7.98 -2.39 -0.02 2.32 16 46 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.08 1.73 8.03 -2.39 -0.02 1.71 16 Total: -1.00 -62.77 385.79 0.00 -62.76 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: 0.44 Total: 36.19 kcal Atomic # 6 Polarization: 28.74 SS G_CDS: 6.26 Total: 34.99 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -5.17 Total: -94.93 kcal Atomic # 8 Polarization: -78.98 SS G_CDS: -3.55 Total: -82.53 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -62.77 0.00 -62.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329454138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.450 kcal (2) G-P(sol) polarization free energy of solvation -62.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds