Wall clock time and date at job start Tue Mar 31 2020 21:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99756 * 2 1 4 4 O 1.42894 * 109.46782 * 134.99792 * 3 2 1 5 5 C 1.42906 * 113.99670 * 179.97438 * 4 3 2 6 6 H 1.08996 * 110.63998 * 26.86190 * 5 4 3 7 7 C 1.55162 * 110.71979 * 150.00012 * 5 4 3 8 8 C 1.54903 * 101.58311 * 153.86425 * 7 5 4 9 9 N 1.47424 * 104.83283 * 322.99137 * 8 7 5 10 10 C 1.34777 * 125.64879 * 204.08788 * 9 8 7 11 11 O 1.21353 * 119.99795 * 180.02562 * 10 9 8 12 12 C 1.49453 * 119.99937 * 0.30452 * 10 9 8 13 13 O 1.21343 * 119.99742 * 359.71852 * 12 10 9 14 14 N 1.34775 * 119.99799 * 179.72511 * 12 10 9 15 15 C 1.47018 * 125.65098 * 359.68616 * 14 12 10 16 16 C 1.54333 * 107.26877 * 178.85459 * 15 14 12 17 17 C 1.55160 * 103.01852 * 338.14022 * 16 15 14 18 18 O 1.42904 * 111.00490 * 277.23508 * 17 16 15 19 19 C 1.50698 * 111.03742 * 153.39897 * 17 16 15 20 20 H 1.08000 * 120.00047 * 6.32593 * 19 17 16 21 21 C 1.37878 * 119.99712 * 186.33413 * 19 17 16 22 22 N 1.31512 * 120.00145 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99498 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47353 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47178 * 119.99936 * 23 21 19 26 26 H 1.48505 * 109.47249 * 239.99375 * 23 21 19 27 27 C 1.47427 * 125.64549 * 179.97438 * 14 12 10 28 28 C 1.47024 * 108.70428 * 24.35491 * 9 8 7 29 29 H 1.08003 * 120.00353 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99916 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99916 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47059 * 14.99273 * 3 2 1 33 33 H 1.09004 * 109.46533 * 254.99886 * 3 2 1 34 34 H 1.09006 * 111.00329 * 35.78981 * 7 5 4 35 35 H 1.09001 * 111.00138 * 271.94511 * 7 5 4 36 36 H 1.09001 * 110.37079 * 204.15142 * 8 7 5 37 37 H 1.09004 * 110.45636 * 81.87611 * 8 7 5 38 38 H 1.09007 * 109.88364 * 298.40145 * 15 14 12 39 39 H 1.09004 * 109.88075 * 59.56191 * 15 14 12 40 40 H 1.09001 * 110.84978 * 219.67238 * 16 15 14 41 41 H 1.08994 * 110.51633 * 96.45241 * 16 15 14 42 42 H 0.96692 * 114.00198 * 173.65274 * 18 17 16 43 43 H 0.97000 * 119.99580 * 180.02562 * 22 21 19 44 44 H 1.08994 * 110.36833 * 322.92623 * 27 14 12 45 45 H 1.08997 * 110.36643 * 85.14163 * 27 14 12 46 46 H 1.08999 * 109.88579 * 118.12813 * 28 9 8 47 47 H 1.08995 * 109.88407 * 239.29734 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9083 2.4350 1.0321 6 1 3.3168 3.3019 0.7377 7 6 4.4818 2.6216 2.4617 8 6 5.7482 3.4681 2.1808 9 7 6.2782 2.9438 0.9089 10 6 7.5588 3.0278 0.4974 11 8 7.8839 2.5591 -0.5738 12 6 8.5798 3.6927 1.3629 13 8 8.2546 4.1614 2.4339 14 7 9.8615 3.7718 0.9538 15 6 10.3913 3.2432 -0.3116 16 6 11.8942 3.5906 -0.3598 17 6 12.0090 4.7832 0.6260 18 8 11.6550 6.0116 -0.0126 19 6 13.3926 4.8647 1.2178 20 1 14.1724 4.2088 0.8599 21 6 13.6627 5.7764 2.2162 22 7 12.7132 6.5753 2.6517 23 14 15.3776 5.8768 2.9501 24 1 16.2570 4.8775 2.2920 25 1 15.9287 7.2391 2.7360 26 1 15.3102 5.5935 4.4063 27 6 10.9657 4.3976 1.7039 28 6 5.1770 2.3197 0.1608 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3854 2.1161 0.2659 33 1 2.4755 1.4867 -0.9927 34 1 4.7443 1.6613 2.9058 35 1 3.7812 3.1650 3.0958 36 1 6.4782 3.3354 2.9793 37 1 5.4873 4.5214 2.0775 38 1 10.2574 2.1619 -0.3466 39 1 9.8776 3.7098 -1.1522 40 1 12.1909 3.8910 -1.3647 41 1 12.4925 2.7470 -0.0159 42 1 11.6176 6.7698 0.5864 43 1 12.9034 7.2169 3.3539 44 1 10.6133 5.2870 2.2262 45 1 11.3938 3.6876 2.4115 46 1 5.0285 2.8415 -0.7845 47 1 5.4030 1.2697 -0.0245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329454139.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:39 Heat of formation + Delta-G solvation = -121.730576 kcal Electronic energy + Delta-G solvation = -29745.326322 eV Core-core repulsion = 25508.563813 eV Total energy + Delta-G solvation = -4236.762509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.61516 -39.30995 -38.22394 -37.21933 -36.72786 -34.35104 -34.06012 -32.26291 -31.11103 -30.23244 -29.04516 -27.89380 -26.59701 -25.81908 -24.33926 -22.79802 -21.84584 -21.02642 -20.30290 -19.68992 -18.94751 -17.62251 -17.23082 -17.03814 -16.60167 -16.25665 -15.80335 -15.44265 -15.22543 -15.09724 -14.83566 -14.39654 -14.08431 -13.86485 -13.47632 -13.33045 -13.14947 -13.04578 -12.91122 -12.77551 -12.40179 -12.23168 -12.09995 -11.93906 -11.67136 -11.51509 -11.37971 -11.11439 -11.07814 -10.86736 -10.72099 -10.56044 -10.46805 -10.33595 -10.21222 -9.71304 -9.38566 -9.07246 -8.82406 -8.71140 -8.40573 -7.90637 -6.31244 -4.40557 1.70797 1.79087 2.44009 3.18283 3.27438 3.30981 3.32560 3.58352 3.76005 4.17786 4.25076 4.29996 4.50465 4.62323 4.67238 4.70634 4.95437 4.96710 5.04892 5.07377 5.15336 5.35633 5.44037 5.48578 5.53221 5.61396 5.77532 5.79501 5.82947 5.88311 6.05105 6.10918 6.12552 6.20490 6.30461 6.50978 6.72460 6.79107 6.81297 6.84430 7.16495 7.21248 7.29862 7.71024 7.77087 7.99408 8.04024 8.44716 8.64123 9.26922 9.35458 10.76034 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.031841 B = 0.002161 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.154416 B =12951.278026 C =13447.045140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.151 4.151 3 C 0.084 3.916 4 O -0.367 6.367 5 C 0.077 3.923 6 H 0.082 0.918 7 C -0.131 4.131 8 C 0.099 3.901 9 N -0.595 5.595 10 C 0.524 3.476 11 O -0.517 6.517 12 C 0.512 3.488 13 O -0.534 6.534 14 N -0.574 5.574 15 C 0.111 3.889 16 C -0.121 4.121 17 C 0.248 3.752 18 O -0.581 6.581 19 C -0.536 4.536 20 H 0.069 0.931 21 C 0.071 3.929 22 N -0.894 5.894 23 Si 0.904 3.096 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.093 3.907 28 C 0.087 3.913 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.381 0.619 43 H 0.270 0.730 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.519 -8.565 -2.780 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.169 4.169 3 C 0.008 3.992 4 O -0.285 6.285 5 C 0.018 3.982 6 H 0.100 0.900 7 C -0.169 4.169 8 C -0.023 4.023 9 N -0.332 5.332 10 C 0.308 3.692 11 O -0.392 6.392 12 C 0.294 3.706 13 O -0.413 6.413 14 N -0.306 5.306 15 C -0.012 4.012 16 C -0.159 4.159 17 C 0.207 3.793 18 O -0.389 6.389 19 C -0.574 4.574 20 H 0.087 0.913 21 C -0.133 4.133 22 N -0.532 5.532 23 Si 0.732 3.268 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.027 4.027 28 C -0.036 4.036 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.230 0.770 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.503 -8.981 -3.099 22.597 hybrid contribution 0.733 0.642 0.738 1.222 sum -19.770 -8.339 -2.361 21.586 Atomic orbital electron populations 1.23851 0.95553 1.02328 1.00034 1.22749 0.95642 0.98214 1.00282 1.21667 0.88774 0.96022 0.92723 1.87992 1.44147 1.36468 1.59928 1.23135 0.90870 0.87845 0.96304 0.89991 1.22993 0.96771 1.01831 0.95309 1.22665 0.95441 0.97520 0.86698 1.48059 1.06803 1.57178 1.21120 1.20165 0.81910 0.80607 0.86517 1.90733 1.79244 1.46682 1.22511 1.19395 0.82605 0.82112 0.86440 1.90666 1.79279 1.48492 1.22835 1.48661 1.06859 1.53769 1.21292 1.22156 0.95337 0.98065 0.85639 1.22713 0.93105 0.98837 1.01260 1.19650 0.91125 0.81877 0.86624 1.86133 1.92546 1.19434 1.40820 1.21504 0.95480 1.20536 1.19877 0.91305 1.25091 0.97822 0.94686 0.95678 1.69718 1.32564 1.21807 1.29147 0.86334 0.83554 0.78138 0.78791 1.19544 1.20743 1.20786 1.23483 0.85120 0.97786 0.96338 1.22429 0.86164 0.99728 0.95270 0.87749 0.88405 0.86475 0.92479 0.92017 0.89335 0.89039 0.87215 0.90663 0.91746 0.91198 0.90490 0.90345 0.76959 0.92024 0.89072 0.91421 0.90915 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.02 14.31 29.01 0.42 -0.60 16 2 C -0.15 -1.05 9.89 -36.03 -0.36 -1.41 16 3 C 0.08 0.61 6.19 36.01 0.22 0.84 16 4 O -0.37 -3.52 10.06 -35.23 -0.35 -3.87 16 5 C 0.08 0.70 3.44 -24.89 -0.09 0.61 16 6 H 0.08 0.59 7.82 -51.93 -0.41 0.18 16 7 C -0.13 -1.20 6.81 -24.58 -0.17 -1.36 16 8 C 0.10 1.20 6.07 -2.53 -0.02 1.19 16 9 N -0.60 -8.58 3.33 -171.02 -0.57 -9.15 16 10 C 0.52 9.40 7.88 -11.58 -0.09 9.31 16 11 O -0.52 -9.94 14.45 5.49 0.08 -9.86 16 12 C 0.51 10.41 7.88 -11.58 -0.09 10.32 16 13 O -0.53 -11.35 14.03 5.50 0.08 -11.28 16 14 N -0.57 -12.27 3.33 -171.03 -0.57 -12.84 16 15 C 0.11 2.18 5.49 -3.06 -0.02 2.16 16 16 C -0.12 -2.49 6.13 -24.89 -0.15 -2.64 16 17 C 0.25 5.98 0.87 -89.63 -0.08 5.90 16 18 O -0.58 -14.74 13.16 -35.23 -0.46 -15.21 16 19 C -0.54 -13.77 8.27 -34.44 -0.28 -14.06 16 20 H 0.07 1.74 7.79 -52.49 -0.41 1.33 16 21 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 22 N -0.89 -23.36 10.69 55.43 0.59 -22.77 16 23 Si 0.90 20.10 29.54 -169.99 -5.02 15.07 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 C 0.09 2.21 5.38 -2.54 -0.01 2.19 16 28 C 0.09 1.00 6.65 -3.06 -0.02 0.98 16 29 H 0.10 0.47 8.06 -52.48 -0.42 0.05 16 30 H 0.10 0.46 7.90 -52.49 -0.41 0.05 16 31 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 32 H 0.06 0.34 7.83 -51.93 -0.41 -0.06 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.11 1.54 6.15 -51.93 -0.32 1.22 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.17 7.71 -51.92 -0.40 0.77 16 39 H 0.07 1.39 7.57 -51.93 -0.39 1.00 16 40 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 41 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 42 H 0.38 9.81 7.56 45.56 0.34 10.15 16 43 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 44 H 0.09 2.37 7.33 -51.93 -0.38 1.99 16 45 H 0.07 1.63 8.03 -51.93 -0.42 1.22 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -29.48 385.51 -7.80 -37.28 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -6.55 Total: 11.65 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: -0.83 Total: 15.14 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.55 Total: -44.75 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -0.66 Total: -40.21 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.48 -7.80 -37.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329454139.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.446 kcal (2) G-P(sol) polarization free energy of solvation -29.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds