Wall clock time and date at job start Tue Mar 31 2020 21:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99756 * 2 1 4 4 O 1.42894 * 109.46782 * 134.99792 * 3 2 1 5 5 C 1.42906 * 113.99670 * 179.97438 * 4 3 2 6 6 H 1.08996 * 110.63998 * 26.86190 * 5 4 3 7 7 C 1.55162 * 110.71979 * 150.00012 * 5 4 3 8 8 C 1.54903 * 101.58311 * 153.86425 * 7 5 4 9 9 N 1.47424 * 104.83283 * 322.99137 * 8 7 5 10 10 C 1.34777 * 125.64879 * 204.08788 * 9 8 7 11 11 O 1.21353 * 119.99795 * 180.02562 * 10 9 8 12 12 C 1.49453 * 119.99937 * 0.30452 * 10 9 8 13 13 O 1.21343 * 119.99742 * 359.71852 * 12 10 9 14 14 N 1.34775 * 119.99799 * 179.72511 * 12 10 9 15 15 C 1.47018 * 125.65098 * 359.68616 * 14 12 10 16 16 C 1.54333 * 107.26877 * 178.85459 * 15 14 12 17 17 C 1.55160 * 103.01852 * 338.14022 * 16 15 14 18 18 O 1.42904 * 111.00490 * 277.23508 * 17 16 15 19 19 C 1.50698 * 111.03742 * 153.39897 * 17 16 15 20 20 H 1.08000 * 120.00047 * 6.32593 * 19 17 16 21 21 C 1.37878 * 119.99712 * 186.33413 * 19 17 16 22 22 N 1.31512 * 120.00145 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99498 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47353 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47178 * 119.99936 * 23 21 19 26 26 H 1.48505 * 109.47249 * 239.99375 * 23 21 19 27 27 C 1.47427 * 125.64549 * 179.97438 * 14 12 10 28 28 C 1.47024 * 108.70428 * 24.35491 * 9 8 7 29 29 H 1.08003 * 120.00353 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99916 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99916 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47059 * 14.99273 * 3 2 1 33 33 H 1.09004 * 109.46533 * 254.99886 * 3 2 1 34 34 H 1.09006 * 111.00329 * 35.78981 * 7 5 4 35 35 H 1.09001 * 111.00138 * 271.94511 * 7 5 4 36 36 H 1.09001 * 110.37079 * 204.15142 * 8 7 5 37 37 H 1.09004 * 110.45636 * 81.87611 * 8 7 5 38 38 H 1.09007 * 109.88364 * 298.40145 * 15 14 12 39 39 H 1.09004 * 109.88075 * 59.56191 * 15 14 12 40 40 H 1.09001 * 110.84978 * 219.67238 * 16 15 14 41 41 H 1.08994 * 110.51633 * 96.45241 * 16 15 14 42 42 H 0.96692 * 114.00198 * 173.65274 * 18 17 16 43 43 H 0.97000 * 119.99580 * 180.02562 * 22 21 19 44 44 H 1.08994 * 110.36833 * 322.92623 * 27 14 12 45 45 H 1.08997 * 110.36643 * 85.14163 * 27 14 12 46 46 H 1.08999 * 109.88579 * 118.12813 * 28 9 8 47 47 H 1.08995 * 109.88407 * 239.29734 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9083 2.4350 1.0321 6 1 3.3168 3.3019 0.7377 7 6 4.4818 2.6216 2.4617 8 6 5.7482 3.4681 2.1808 9 7 6.2782 2.9438 0.9089 10 6 7.5588 3.0278 0.4974 11 8 7.8839 2.5591 -0.5738 12 6 8.5798 3.6927 1.3629 13 8 8.2546 4.1614 2.4339 14 7 9.8615 3.7718 0.9538 15 6 10.3913 3.2432 -0.3116 16 6 11.8942 3.5906 -0.3598 17 6 12.0090 4.7832 0.6260 18 8 11.6550 6.0116 -0.0126 19 6 13.3926 4.8647 1.2178 20 1 14.1724 4.2088 0.8599 21 6 13.6627 5.7764 2.2162 22 7 12.7132 6.5753 2.6517 23 14 15.3776 5.8768 2.9501 24 1 16.2570 4.8775 2.2920 25 1 15.9287 7.2391 2.7360 26 1 15.3102 5.5935 4.4063 27 6 10.9657 4.3976 1.7039 28 6 5.1770 2.3197 0.1608 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3854 2.1161 0.2659 33 1 2.4755 1.4867 -0.9927 34 1 4.7443 1.6613 2.9058 35 1 3.7812 3.1650 3.0958 36 1 6.4782 3.3354 2.9793 37 1 5.4873 4.5214 2.0775 38 1 10.2574 2.1619 -0.3466 39 1 9.8776 3.7098 -1.1522 40 1 12.1909 3.8910 -1.3647 41 1 12.4925 2.7470 -0.0159 42 1 11.6176 6.7698 0.5864 43 1 12.9034 7.2169 3.3539 44 1 10.6133 5.2870 2.2262 45 1 11.3938 3.6876 2.4115 46 1 5.0285 2.8415 -0.7845 47 1 5.4030 1.2697 -0.0245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329454139.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:38 Heat of formation + Delta-G solvation = -142.579754 kcal Electronic energy + Delta-G solvation = -29746.230410 eV Core-core repulsion = 25508.563813 eV Total energy + Delta-G solvation = -4237.666597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99250 -40.53511 -39.45153 -38.88871 -37.74723 -36.08221 -34.70261 -34.24931 -32.10385 -31.96822 -30.04013 -29.63704 -27.78878 -26.99625 -25.74458 -24.21652 -22.99024 -22.06558 -21.52104 -20.81954 -20.34239 -19.13889 -18.47101 -18.40423 -18.01346 -17.33481 -17.11878 -16.88101 -16.58884 -16.31532 -16.07609 -16.03305 -15.18510 -14.96779 -14.79943 -14.69792 -14.46187 -14.36266 -14.11531 -13.97279 -13.77787 -13.53155 -13.32767 -13.22915 -13.00980 -12.85880 -12.68215 -12.57857 -12.41318 -12.35060 -12.19951 -12.11857 -11.84413 -11.68477 -11.22435 -10.98448 -10.73112 -10.55016 -10.34159 -10.20675 -10.00290 -9.62615 -8.25931 -6.42574 0.28499 1.06872 1.27622 1.42333 1.46013 1.56585 2.05029 2.26000 2.39956 2.76068 3.00029 3.06875 3.45269 3.47462 3.75472 3.92854 4.03017 4.04680 4.13129 4.20449 4.21776 4.29655 4.31941 4.45491 4.55329 4.57172 4.64052 4.68123 4.70525 4.78099 4.87050 4.96009 4.99822 5.03692 5.05135 5.09243 5.17913 5.31632 5.42331 5.68378 5.73576 5.73921 5.93860 6.03991 6.19357 6.25184 6.49351 6.66246 6.86524 7.26092 7.34318 8.80077 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.031841 B = 0.002161 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.154416 B =12951.278026 C =13447.045140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.174 4.174 3 C 0.080 3.920 4 O -0.382 6.382 5 C 0.087 3.913 6 H 0.110 0.890 7 C -0.120 4.120 8 C 0.093 3.907 9 N -0.588 5.588 10 C 0.525 3.475 11 O -0.535 6.535 12 C 0.506 3.494 13 O -0.548 6.548 14 N -0.584 5.584 15 C 0.119 3.881 16 C -0.115 4.115 17 C 0.233 3.767 18 O -0.587 6.587 19 C -0.555 4.555 20 H 0.070 0.930 21 C 0.029 3.971 22 N -0.914 5.914 23 Si 0.965 3.035 24 H -0.265 1.265 25 H -0.281 1.281 26 H -0.281 1.281 27 C 0.109 3.891 28 C 0.083 3.917 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.374 0.626 43 H 0.271 0.729 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.082 0.918 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.154 -9.171 -3.054 24.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.192 4.192 3 C 0.004 3.996 4 O -0.301 6.301 5 C 0.029 3.971 6 H 0.128 0.872 7 C -0.157 4.157 8 C -0.028 4.028 9 N -0.323 5.323 10 C 0.307 3.693 11 O -0.412 6.412 12 C 0.289 3.711 13 O -0.428 6.428 14 N -0.316 5.316 15 C -0.003 4.003 16 C -0.153 4.153 17 C 0.192 3.808 18 O -0.395 6.395 19 C -0.593 4.593 20 H 0.088 0.912 21 C -0.173 4.173 22 N -0.553 5.553 23 Si 0.791 3.209 24 H -0.189 1.189 25 H -0.206 1.206 26 H -0.207 1.207 27 C -0.013 4.013 28 C -0.039 4.039 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.139 0.861 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.111 0.889 42 H 0.223 0.777 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.100 0.900 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.188 -9.608 -3.376 24.413 hybrid contribution 1.115 0.815 0.850 1.622 sum -21.073 -8.793 -2.526 22.973 Atomic orbital electron populations 1.24058 0.95149 1.03409 0.97948 1.22781 0.96226 0.97977 1.02251 1.21837 0.88512 0.96731 0.92506 1.87982 1.44733 1.36780 1.60582 1.23106 0.89976 0.88810 0.95251 0.87233 1.22949 0.95597 1.01194 0.96002 1.22798 0.96221 0.98781 0.85009 1.48149 1.06193 1.55895 1.22029 1.19603 0.82696 0.80948 0.86007 1.90716 1.79758 1.47822 1.22912 1.19971 0.82756 0.81724 0.86601 1.90654 1.79623 1.48937 1.23609 1.48699 1.07029 1.54183 1.21670 1.22147 0.94505 0.98926 0.84708 1.22722 0.94016 0.97678 1.00842 1.19869 0.90689 0.82350 0.87855 1.86126 1.92636 1.19795 1.40940 1.21776 0.96285 1.20873 1.20353 0.91222 1.25803 1.01062 0.94399 0.96003 1.69821 1.34025 1.22093 1.29355 0.85390 0.79608 0.78039 0.77879 1.18950 1.20631 1.20685 1.23042 0.85845 0.96306 0.96059 1.22679 0.86249 0.98969 0.96036 0.86810 0.87203 0.87291 0.90757 0.91594 0.90074 0.86119 0.89435 0.89623 0.90025 0.91405 0.89604 0.88933 0.77681 0.92002 0.92119 0.92574 0.89990 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 14.31 67.78 0.97 -0.55 16 2 C -0.17 -2.14 9.89 25.64 0.25 -1.89 16 3 C 0.08 0.97 6.19 71.24 0.44 1.41 16 4 O -0.38 -6.47 10.06 -148.98 -1.50 -7.97 16 5 C 0.09 1.34 3.44 31.79 0.11 1.45 16 6 H 0.11 1.14 7.82 -2.39 -0.02 1.12 16 7 C -0.12 -1.91 6.81 31.99 0.22 -1.69 16 8 C 0.09 2.17 6.07 86.85 0.53 2.70 16 9 N -0.59 -16.45 3.33 -813.34 -2.70 -19.15 16 10 C 0.52 18.72 7.88 87.27 0.69 19.41 16 11 O -0.53 -20.33 14.45 -3.26 -0.05 -20.38 16 12 C 0.51 20.87 7.88 87.27 0.69 21.56 16 13 O -0.55 -23.89 14.03 -3.22 -0.05 -23.93 16 14 N -0.58 -25.31 3.33 -813.39 -2.70 -28.02 16 15 C 0.12 4.63 5.49 86.73 0.48 5.11 16 16 C -0.11 -4.64 6.13 31.79 0.19 -4.45 16 17 C 0.23 11.36 0.87 -10.15 -0.01 11.35 16 18 O -0.59 -30.36 13.16 -148.98 -1.96 -32.32 16 19 C -0.55 -28.67 8.27 25.60 0.21 -28.46 16 20 H 0.07 3.50 7.79 -2.91 -0.02 3.48 16 21 C 0.03 1.47 5.29 84.66 0.45 1.91 16 22 N -0.91 -48.66 10.69 21.45 0.23 -48.43 16 23 Si 0.97 41.22 29.54 68.60 2.03 43.25 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 27 C 0.11 5.32 5.38 86.85 0.47 5.78 16 28 C 0.08 1.77 6.65 86.73 0.58 2.35 16 29 H 0.11 0.78 8.06 -2.91 -0.02 0.76 16 30 H 0.11 0.71 7.90 -2.91 -0.02 0.69 16 31 H 0.11 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.07 0.64 7.83 -2.39 -0.02 0.63 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 2.47 6.15 -2.39 -0.01 2.45 16 37 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.08 2.89 7.71 -2.38 -0.02 2.88 16 39 H 0.07 2.67 7.57 -2.38 -0.02 2.65 16 40 H 0.09 3.29 8.14 -2.39 -0.02 3.28 16 41 H 0.09 3.45 8.03 -2.39 -0.02 3.43 16 42 H 0.37 19.94 7.56 -74.06 -0.56 19.38 16 43 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 44 H 0.06 3.30 7.33 -2.39 -0.02 3.28 16 45 H 0.06 2.80 8.03 -2.39 -0.02 2.78 16 46 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.07 1.71 8.05 -2.39 -0.02 1.69 16 Total: -1.00 -63.81 385.51 -0.03 -63.84 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: 0.42 Total: 37.11 kcal Atomic # 6 Polarization: 29.75 SS G_CDS: 6.26 Total: 36.01 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -5.18 Total: -95.60 kcal Atomic # 8 Polarization: -81.05 SS G_CDS: -3.55 Total: -84.60 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -63.81 -0.03 -63.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329454139.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.745 kcal (2) G-P(sol) polarization free energy of solvation -63.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds