Wall clock time and date at job start Tue Mar 31 2020 21:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99726 * 2 1 4 4 O 1.42905 * 109.46757 * 135.00167 * 3 2 1 5 5 C 1.42891 * 114.00145 * 180.02562 * 4 3 2 6 6 H 1.08998 * 110.78064 * 31.78550 * 5 4 3 7 7 C 1.55155 * 110.72423 * 155.02445 * 5 4 3 8 8 C 1.54907 * 101.58383 * 153.86308 * 7 5 4 9 9 N 1.47420 * 104.83524 * 322.99460 * 8 7 5 10 10 C 1.34780 * 125.65180 * 204.09058 * 9 8 7 11 11 O 1.21351 * 120.00031 * 180.02562 * 10 9 8 12 12 C 1.49453 * 119.99783 * 0.04083 * 10 9 8 13 13 O 1.21347 * 119.99756 * 0.02562 * 12 10 9 14 14 N 1.34772 * 120.00027 * 179.97438 * 12 10 9 15 15 C 1.47018 * 125.64810 * 0.03134 * 14 12 10 16 16 C 1.54324 * 107.27190 * 181.01713 * 15 14 12 17 17 C 1.55151 * 102.94229 * 22.19125 * 16 15 14 18 18 O 1.42901 * 111.00633 * 82.60971 * 17 16 15 19 19 C 1.50699 * 111.00440 * 206.42380 * 17 16 15 20 20 H 1.07989 * 120.00129 * 359.97438 * 19 17 16 21 21 C 1.37877 * 119.99700 * 180.02562 * 19 17 16 22 22 N 1.31512 * 120.00265 * 359.97438 * 21 19 17 23 23 Si 1.86804 * 119.99900 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47556 * 89.99500 * 23 21 19 25 25 H 1.48500 * 109.47232 * 210.00231 * 23 21 19 26 26 H 1.48509 * 109.46953 * 329.99687 * 23 21 19 27 27 C 1.47420 * 125.64947 * 179.71272 * 14 12 10 28 28 C 1.47026 * 108.70428 * 24.12518 * 9 8 7 29 29 H 1.08007 * 120.00109 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.00566 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.99884 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46943 * 15.00659 * 3 2 1 33 33 H 1.08997 * 109.47325 * 255.00006 * 3 2 1 34 34 H 1.09001 * 111.00015 * 35.79053 * 7 5 4 35 35 H 1.08994 * 111.03653 * 271.95750 * 7 5 4 36 36 H 1.08997 * 110.36783 * 204.15179 * 8 7 5 37 37 H 1.08997 * 110.45914 * 81.87830 * 8 7 5 38 38 H 1.09007 * 109.88031 * 300.43526 * 15 14 12 39 39 H 1.09003 * 109.88478 * 61.59739 * 15 14 12 40 40 H 1.09000 * 110.71726 * 140.55399 * 16 15 14 41 41 H 1.08996 * 110.71808 * 263.82663 * 16 15 14 42 42 H 0.96696 * 114.00537 * 180.02562 * 18 17 16 43 43 H 0.97004 * 120.00137 * 180.02562 * 22 21 19 44 44 H 1.09000 * 110.37125 * 274.75262 * 27 14 12 45 45 H 1.09000 * 110.36359 * 37.07592 * 27 14 12 46 46 H 1.08998 * 109.88351 * 118.35702 * 28 9 8 47 47 H 1.08998 * 109.88379 * 239.52492 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9077 2.4352 1.0330 6 1 3.2955 3.3125 0.8239 7 6 4.5837 2.5566 2.4242 8 6 5.8231 3.4248 2.0931 9 7 6.2603 2.9666 0.7619 10 6 7.5070 3.0796 0.2625 11 8 7.7544 2.6657 -0.8511 12 6 8.5848 3.7145 1.0803 13 8 8.3376 4.1277 2.1941 14 7 9.8316 3.8270 0.5811 15 6 10.2674 3.3709 -0.7468 16 6 11.7735 3.6847 -0.8677 17 6 12.2274 3.7855 0.6125 18 8 12.4872 2.4905 1.1580 19 6 13.4344 4.6775 0.7479 20 1 13.8618 5.1442 -0.1272 21 6 13.9938 4.8968 1.9888 22 7 13.4737 4.3280 3.0544 23 14 15.4896 6.0031 2.1568 24 1 15.0475 7.4025 2.3837 25 1 16.3128 5.5513 3.3072 26 1 16.2979 5.9349 0.9128 27 6 10.9828 4.4340 1.2737 28 6 5.1108 2.3665 0.0688 29 1 -0.5401 -0.9354 -0.0004 30 1 -0.5401 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3854 2.1161 0.2661 33 1 2.4754 1.4869 -0.9926 34 1 4.8815 1.5779 2.8005 35 1 3.9299 3.0633 3.1340 36 1 6.6100 3.2589 2.8288 37 1 5.5515 4.4799 2.0608 38 1 10.1035 2.2974 -0.8422 39 1 9.7146 3.9026 -1.5213 40 1 12.2964 2.8752 -1.3771 41 1 11.9299 4.6316 -1.3843 42 1 12.7734 2.5028 2.0815 43 1 13.8671 4.4826 3.9276 44 1 10.9899 5.5136 1.1235 45 1 10.9528 4.1983 2.3375 46 1 4.8908 2.9282 -0.8390 47 1 5.3284 1.3277 -0.1790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329454140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:42 Heat of formation + Delta-G solvation = -121.838970 kcal Electronic energy + Delta-G solvation = -29750.115413 eV Core-core repulsion = 25513.348204 eV Total energy + Delta-G solvation = -4236.767209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.62016 -39.31286 -38.21546 -37.21627 -36.72057 -34.36779 -34.06547 -32.18232 -31.11512 -30.23911 -29.03648 -27.93200 -26.60952 -25.81932 -24.33337 -22.79132 -21.84527 -21.01351 -20.30285 -19.66803 -18.94781 -17.62333 -17.28618 -17.02472 -16.59552 -16.31798 -15.82051 -15.43403 -15.21751 -15.03628 -14.78951 -14.46959 -14.09395 -13.82524 -13.47336 -13.27519 -13.14626 -13.07404 -12.94815 -12.77819 -12.39666 -12.24404 -12.10498 -11.89147 -11.64820 -11.54787 -11.36917 -11.10141 -11.07945 -10.88955 -10.68106 -10.55981 -10.50496 -10.33885 -10.20825 -9.71129 -9.41685 -9.08088 -8.81361 -8.70914 -8.43565 -7.89143 -6.32848 -4.42232 1.71583 1.78676 2.43754 3.18459 3.26391 3.29169 3.32174 3.58634 3.75663 4.17021 4.23940 4.30542 4.51006 4.62297 4.67313 4.70733 4.94803 4.95942 5.05174 5.07373 5.14482 5.35658 5.43893 5.48792 5.53702 5.61433 5.78386 5.79704 5.86199 5.88354 6.04355 6.11171 6.13406 6.21234 6.31186 6.49997 6.72037 6.77711 6.80742 6.83706 7.15857 7.21009 7.29272 7.70722 7.76270 7.96358 8.03301 8.44040 8.61708 9.27718 9.43687 10.74509 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.031349 B = 0.002166 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.947533 B =12921.258363 C =13380.317462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.151 4.151 3 C 0.084 3.916 4 O -0.366 6.366 5 C 0.077 3.923 6 H 0.082 0.918 7 C -0.130 4.130 8 C 0.099 3.901 9 N -0.595 5.595 10 C 0.524 3.476 11 O -0.516 6.516 12 C 0.512 3.488 13 O -0.534 6.534 14 N -0.573 5.573 15 C 0.111 3.889 16 C -0.122 4.122 17 C 0.249 3.751 18 O -0.582 6.582 19 C -0.537 4.537 20 H 0.069 0.931 21 C 0.070 3.930 22 N -0.896 5.896 23 Si 0.906 3.094 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.091 3.909 28 C 0.085 3.915 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.386 0.614 43 H 0.272 0.728 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.837 -3.361 -3.926 22.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.169 4.169 3 C 0.008 3.992 4 O -0.285 6.285 5 C 0.019 3.981 6 H 0.100 0.900 7 C -0.168 4.168 8 C -0.023 4.023 9 N -0.332 5.332 10 C 0.308 3.692 11 O -0.392 6.392 12 C 0.294 3.706 13 O -0.413 6.413 14 N -0.304 5.304 15 C -0.011 4.011 16 C -0.160 4.160 17 C 0.208 3.792 18 O -0.392 6.392 19 C -0.575 4.575 20 H 0.087 0.913 21 C -0.133 4.133 22 N -0.535 5.535 23 Si 0.733 3.267 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.196 1.196 27 C -0.030 4.030 28 C -0.038 4.038 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.238 0.762 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.913 -3.735 -4.249 22.632 hybrid contribution 0.750 0.986 0.507 1.338 sum -21.163 -2.749 -3.742 21.667 Atomic orbital electron populations 1.23848 0.95549 1.02317 1.00073 1.22749 0.95643 0.98228 1.00245 1.21656 0.88771 0.96023 0.92749 1.88001 1.44177 1.36371 1.59939 1.23134 0.91042 0.87967 0.95987 0.90036 1.22968 0.96358 1.01966 0.95480 1.22664 0.96997 0.98007 0.84638 1.48059 1.07887 1.59162 1.18049 1.20161 0.82189 0.80207 0.86632 1.90733 1.80958 1.47814 1.19645 1.19405 0.82833 0.81744 0.86572 1.90665 1.81134 1.49993 1.19552 1.48625 1.08122 1.55437 1.18260 1.22152 0.95925 0.99917 0.83150 1.22724 0.92581 1.01849 0.98839 1.19641 0.90186 0.82009 0.87345 1.86090 1.89893 1.29799 1.33443 1.21507 1.12665 1.29284 0.94033 0.91302 1.25094 0.97306 0.95337 0.95529 1.69561 1.41022 1.43716 0.99208 0.86363 0.82002 0.80370 0.77946 1.20400 1.20960 1.19638 1.23559 0.83491 0.97061 0.98866 1.22475 0.85547 1.00010 0.95750 0.87745 0.88422 0.86453 0.92504 0.92021 0.89270 0.89002 0.87170 0.90712 0.91154 0.91790 0.90462 0.90405 0.76191 0.91820 0.91399 0.89517 0.90989 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 14.31 29.01 0.42 -0.62 16 2 C -0.15 -1.07 9.89 -36.02 -0.36 -1.42 16 3 C 0.08 0.62 6.23 36.01 0.22 0.84 16 4 O -0.37 -3.56 10.05 -35.23 -0.35 -3.91 16 5 C 0.08 0.70 3.40 -24.89 -0.08 0.61 16 6 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 7 C -0.13 -1.20 6.81 -24.58 -0.17 -1.37 16 8 C 0.10 1.20 6.06 -2.53 -0.02 1.19 16 9 N -0.60 -8.57 3.33 -171.03 -0.57 -9.14 16 10 C 0.52 9.41 7.88 -11.58 -0.09 9.31 16 11 O -0.52 -9.94 14.45 5.50 0.08 -9.86 16 12 C 0.51 10.41 7.88 -11.59 -0.09 10.32 16 13 O -0.53 -11.35 14.03 5.50 0.08 -11.27 16 14 N -0.57 -12.26 3.32 -170.89 -0.57 -12.82 16 15 C 0.11 2.19 5.49 -3.07 -0.02 2.17 16 16 C -0.12 -2.50 6.12 -24.90 -0.15 -2.66 16 17 C 0.25 6.04 0.89 -89.51 -0.08 5.96 16 18 O -0.58 -15.03 13.19 -35.23 -0.46 -15.49 16 19 C -0.54 -13.77 8.25 -34.44 -0.28 -14.05 16 20 H 0.07 1.73 7.76 -52.49 -0.41 1.32 16 21 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 22 N -0.90 -23.42 10.72 55.43 0.59 -22.83 16 23 Si 0.91 20.03 29.54 -169.99 -5.02 15.00 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 C 0.09 2.15 5.65 -2.41 -0.01 2.14 16 28 C 0.09 0.98 6.64 -3.06 -0.02 0.96 16 29 H 0.10 0.48 8.06 -52.48 -0.42 0.06 16 30 H 0.10 0.46 7.90 -52.48 -0.41 0.05 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 32 H 0.06 0.34 7.83 -51.93 -0.41 -0.06 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.11 1.57 6.16 -51.93 -0.32 1.26 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.41 7.58 -51.92 -0.39 1.02 16 39 H 0.06 1.16 7.69 -51.93 -0.40 0.76 16 40 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.08 1.48 8.01 -51.93 -0.42 1.06 16 42 H 0.39 10.22 6.93 45.56 0.32 10.53 16 43 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 44 H 0.07 1.61 8.03 -51.93 -0.42 1.19 16 45 H 0.09 2.26 7.64 -51.93 -0.40 1.86 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -29.48 385.51 -7.85 -37.32 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -6.60 Total: 12.10 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: -0.83 Total: 15.09 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.54 Total: -44.80 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -0.66 Total: -40.54 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.48 -7.85 -37.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329454140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.517 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds