Wall clock time and date at job start Tue Mar 31 2020 21:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50703 * 119.99726 * 2 1 4 4 O 1.42905 * 109.46757 * 135.00167 * 3 2 1 5 5 C 1.42891 * 114.00145 * 180.02562 * 4 3 2 6 6 H 1.08998 * 110.78064 * 31.78550 * 5 4 3 7 7 C 1.55155 * 110.72423 * 155.02445 * 5 4 3 8 8 C 1.54907 * 101.58383 * 153.86308 * 7 5 4 9 9 N 1.47420 * 104.83524 * 322.99460 * 8 7 5 10 10 C 1.34780 * 125.65180 * 204.09058 * 9 8 7 11 11 O 1.21351 * 120.00031 * 180.02562 * 10 9 8 12 12 C 1.49453 * 119.99783 * 0.04083 * 10 9 8 13 13 O 1.21347 * 119.99756 * 0.02562 * 12 10 9 14 14 N 1.34772 * 120.00027 * 179.97438 * 12 10 9 15 15 C 1.47018 * 125.64810 * 0.03134 * 14 12 10 16 16 C 1.54324 * 107.27190 * 181.01713 * 15 14 12 17 17 C 1.55151 * 102.94229 * 22.19125 * 16 15 14 18 18 O 1.42901 * 111.00633 * 82.60971 * 17 16 15 19 19 C 1.50699 * 111.00440 * 206.42380 * 17 16 15 20 20 H 1.07989 * 120.00129 * 359.97438 * 19 17 16 21 21 C 1.37877 * 119.99700 * 180.02562 * 19 17 16 22 22 N 1.31512 * 120.00265 * 359.97438 * 21 19 17 23 23 Si 1.86804 * 119.99900 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47556 * 89.99500 * 23 21 19 25 25 H 1.48500 * 109.47232 * 210.00231 * 23 21 19 26 26 H 1.48509 * 109.46953 * 329.99687 * 23 21 19 27 27 C 1.47420 * 125.64947 * 179.71272 * 14 12 10 28 28 C 1.47026 * 108.70428 * 24.12518 * 9 8 7 29 29 H 1.08007 * 120.00109 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.00566 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.99884 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46943 * 15.00659 * 3 2 1 33 33 H 1.08997 * 109.47325 * 255.00006 * 3 2 1 34 34 H 1.09001 * 111.00015 * 35.79053 * 7 5 4 35 35 H 1.08994 * 111.03653 * 271.95750 * 7 5 4 36 36 H 1.08997 * 110.36783 * 204.15179 * 8 7 5 37 37 H 1.08997 * 110.45914 * 81.87830 * 8 7 5 38 38 H 1.09007 * 109.88031 * 300.43526 * 15 14 12 39 39 H 1.09003 * 109.88478 * 61.59739 * 15 14 12 40 40 H 1.09000 * 110.71726 * 140.55399 * 16 15 14 41 41 H 1.08996 * 110.71808 * 263.82663 * 16 15 14 42 42 H 0.96696 * 114.00537 * 180.02562 * 18 17 16 43 43 H 0.97004 * 120.00137 * 180.02562 * 22 21 19 44 44 H 1.09000 * 110.37125 * 274.75262 * 27 14 12 45 45 H 1.09000 * 110.36359 * 37.07592 * 27 14 12 46 46 H 1.08998 * 109.88351 * 118.35702 * 28 9 8 47 47 H 1.08998 * 109.88379 * 239.52492 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9077 2.4352 1.0330 6 1 3.2955 3.3125 0.8239 7 6 4.5837 2.5566 2.4242 8 6 5.8231 3.4248 2.0931 9 7 6.2603 2.9666 0.7619 10 6 7.5070 3.0796 0.2625 11 8 7.7544 2.6657 -0.8511 12 6 8.5848 3.7145 1.0803 13 8 8.3376 4.1277 2.1941 14 7 9.8316 3.8270 0.5811 15 6 10.2674 3.3709 -0.7468 16 6 11.7735 3.6847 -0.8677 17 6 12.2274 3.7855 0.6125 18 8 12.4872 2.4905 1.1580 19 6 13.4344 4.6775 0.7479 20 1 13.8618 5.1442 -0.1272 21 6 13.9938 4.8968 1.9888 22 7 13.4737 4.3280 3.0544 23 14 15.4896 6.0031 2.1568 24 1 15.0475 7.4025 2.3837 25 1 16.3128 5.5513 3.3072 26 1 16.2979 5.9349 0.9128 27 6 10.9828 4.4340 1.2737 28 6 5.1108 2.3665 0.0688 29 1 -0.5401 -0.9354 -0.0004 30 1 -0.5401 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3854 2.1161 0.2661 33 1 2.4754 1.4869 -0.9926 34 1 4.8815 1.5779 2.8005 35 1 3.9299 3.0633 3.1340 36 1 6.6100 3.2589 2.8288 37 1 5.5515 4.4799 2.0608 38 1 10.1035 2.2974 -0.8422 39 1 9.7146 3.9026 -1.5213 40 1 12.2964 2.8752 -1.3771 41 1 11.9299 4.6316 -1.3843 42 1 12.7734 2.5028 2.0815 43 1 13.8671 4.4826 3.9276 44 1 10.9899 5.5136 1.1235 45 1 10.9528 4.1983 2.3375 46 1 4.8908 2.9282 -0.8390 47 1 5.3284 1.3277 -0.1790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329454140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:41 Heat of formation + Delta-G solvation = -142.657236 kcal Electronic energy + Delta-G solvation = -29751.018161 eV Core-core repulsion = 25513.348204 eV Total energy + Delta-G solvation = -4237.669957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.99454 -40.53573 -39.45033 -38.88750 -37.74467 -36.11927 -34.70596 -34.17239 -32.11077 -31.97950 -30.04153 -29.66492 -27.78745 -27.01276 -25.73907 -24.20573 -22.99215 -22.05729 -21.50158 -20.82705 -20.33886 -19.20576 -18.44186 -18.41116 -18.04711 -17.36893 -17.09245 -16.87477 -16.58969 -16.30093 -16.05816 -16.01617 -15.29728 -14.88932 -14.76740 -14.70149 -14.41439 -14.39757 -14.14960 -13.96737 -13.78756 -13.50668 -13.35895 -13.25337 -13.02140 -12.84407 -12.66873 -12.54272 -12.40731 -12.33170 -12.22274 -12.13199 -11.84647 -11.69262 -11.25465 -10.98968 -10.70269 -10.56976 -10.35571 -10.21784 -10.00834 -9.61614 -8.26966 -6.43754 0.28201 1.06688 1.27328 1.43848 1.46243 1.55960 2.04584 2.26032 2.39626 2.76029 2.98779 3.06845 3.44481 3.47671 3.75878 3.93391 4.03223 4.06588 4.13213 4.20155 4.21566 4.29214 4.30991 4.45862 4.55067 4.57200 4.63767 4.67955 4.69624 4.77933 4.86579 4.93529 4.99602 5.03684 5.04286 5.09012 5.17832 5.32094 5.41279 5.68231 5.73413 5.74303 5.93357 6.00798 6.19646 6.24617 6.48837 6.64818 6.86115 7.28556 7.37959 8.79209 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.031349 B = 0.002166 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.947533 B =12921.258363 C =13380.317462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.175 4.175 3 C 0.080 3.920 4 O -0.383 6.383 5 C 0.088 3.912 6 H 0.112 0.888 7 C -0.120 4.120 8 C 0.094 3.906 9 N -0.588 5.588 10 C 0.525 3.475 11 O -0.535 6.535 12 C 0.506 3.494 13 O -0.549 6.549 14 N -0.583 5.583 15 C 0.120 3.880 16 C -0.115 4.115 17 C 0.232 3.768 18 O -0.591 6.591 19 C -0.555 4.555 20 H 0.072 0.928 21 C 0.027 3.973 22 N -0.917 5.917 23 Si 0.968 3.032 24 H -0.275 1.275 25 H -0.284 1.284 26 H -0.267 1.267 27 C 0.106 3.894 28 C 0.081 3.919 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.379 0.621 43 H 0.272 0.728 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.816 -2.613 -4.711 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 C 0.004 3.996 4 O -0.302 6.302 5 C 0.029 3.971 6 H 0.130 0.870 7 C -0.158 4.158 8 C -0.027 4.027 9 N -0.323 5.323 10 C 0.307 3.693 11 O -0.412 6.412 12 C 0.289 3.711 13 O -0.429 6.429 14 N -0.315 5.315 15 C -0.002 4.002 16 C -0.153 4.153 17 C 0.192 3.808 18 O -0.400 6.400 19 C -0.593 4.593 20 H 0.090 0.910 21 C -0.174 4.174 22 N -0.557 5.557 23 Si 0.793 3.207 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.191 1.191 27 C -0.016 4.016 28 C -0.041 4.041 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.140 0.860 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.230 0.770 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.103 0.897 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -23.944 -3.000 -5.039 24.652 hybrid contribution 1.244 0.704 0.797 1.637 sum -22.700 -2.296 -4.242 23.207 Atomic orbital electron populations 1.24057 0.95116 1.03427 0.97907 1.22781 0.96256 0.97986 1.02292 1.21826 0.88509 0.96725 0.92506 1.87990 1.44800 1.36790 1.60605 1.23121 0.90341 0.89017 0.94594 0.87001 1.22930 0.95319 1.01073 0.96435 1.22798 0.97493 0.99582 0.82873 1.48152 1.07365 1.57737 1.19017 1.19601 0.82822 0.80635 0.86201 1.90715 1.81414 1.49010 1.20065 1.19982 0.83112 0.81308 0.86677 1.90653 1.81540 1.50381 1.20288 1.48667 1.08153 1.55880 1.18761 1.22142 0.95512 0.99804 0.82785 1.22735 0.92982 1.03090 0.96491 1.19902 0.90140 0.81277 0.89505 1.86083 1.89946 1.31057 1.32944 1.21792 1.13422 1.29737 0.94374 0.90976 1.25832 0.99766 0.96510 0.95255 1.69664 1.42003 1.44539 0.99493 0.85399 0.78832 0.78611 0.77848 1.20037 1.20935 1.19111 1.23141 0.84691 0.96688 0.97084 1.22731 0.85324 0.99181 0.96882 0.86841 0.87120 0.87408 0.90648 0.91629 0.90383 0.85988 0.89727 0.89153 0.91687 0.89789 0.89749 0.88708 0.77041 0.91826 0.92027 0.92773 0.89702 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 14.31 67.78 0.97 -0.58 16 2 C -0.18 -2.22 9.89 25.65 0.25 -1.96 16 3 C 0.08 0.99 6.23 71.24 0.44 1.43 16 4 O -0.38 -6.62 10.05 -148.98 -1.50 -8.11 16 5 C 0.09 1.35 3.40 31.78 0.11 1.46 16 6 H 0.11 1.10 7.89 -2.39 -0.02 1.09 16 7 C -0.12 -1.96 6.81 31.98 0.22 -1.74 16 8 C 0.09 2.18 6.06 86.86 0.53 2.70 16 9 N -0.59 -16.44 3.33 -813.36 -2.71 -19.14 16 10 C 0.52 18.73 7.88 87.27 0.69 19.42 16 11 O -0.53 -20.35 14.45 -3.25 -0.05 -20.39 16 12 C 0.51 20.87 7.88 87.27 0.69 21.56 16 13 O -0.55 -23.88 14.03 -3.24 -0.05 -23.93 16 14 N -0.58 -25.28 3.32 -812.94 -2.70 -27.99 16 15 C 0.12 4.66 5.49 86.73 0.48 5.13 16 16 C -0.12 -4.66 6.12 31.78 0.19 -4.47 16 17 C 0.23 11.41 0.89 -10.07 -0.01 11.40 16 18 O -0.59 -31.28 13.19 -148.98 -1.97 -33.24 16 19 C -0.56 -28.60 8.25 25.60 0.21 -28.39 16 20 H 0.07 3.58 7.76 -2.92 -0.02 3.56 16 21 C 0.03 1.39 5.30 84.65 0.45 1.84 16 22 N -0.92 -48.98 10.72 21.45 0.23 -48.75 16 23 Si 0.97 41.04 29.54 68.60 2.03 43.06 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 C 0.11 5.14 5.65 86.93 0.49 5.64 16 28 C 0.08 1.73 6.64 86.73 0.58 2.31 16 29 H 0.11 0.81 8.06 -2.91 -0.02 0.78 16 30 H 0.11 0.72 7.90 -2.91 -0.02 0.69 16 31 H 0.11 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.08 0.65 7.83 -2.39 -0.02 0.63 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 2.44 6.16 -2.39 -0.01 2.43 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 2.60 7.58 -2.38 -0.02 2.58 16 39 H 0.08 2.94 7.69 -2.39 -0.02 2.92 16 40 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.09 3.48 8.01 -2.39 -0.02 3.46 16 42 H 0.38 20.82 6.93 -74.06 -0.51 20.31 16 43 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 44 H 0.06 3.00 8.03 -2.39 -0.02 2.98 16 45 H 0.05 2.95 7.64 -2.39 -0.02 2.93 16 46 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.07 1.68 8.06 -2.39 -0.02 1.66 16 Total: -1.00 -64.26 385.51 0.04 -64.22 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: 0.46 Total: 38.51 kcal Atomic # 6 Polarization: 29.47 SS G_CDS: 6.28 Total: 35.76 kcal Atomic # 7 Polarization: -90.70 SS G_CDS: -5.18 Total: -95.87 kcal Atomic # 8 Polarization: -82.12 SS G_CDS: -3.56 Total: -85.68 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -64.26 0.04 -64.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329454140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.433 kcal (2) G-P(sol) polarization free energy of solvation -64.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds