Wall clock time and date at job start Tue Mar 31 2020 21:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.32758 * 2 1 4 4 C 1.54908 * 110.36604 * 237.76424 * 2 1 3 5 5 C 1.55154 * 101.58289 * 204.04410 * 4 2 1 6 6 H 1.08997 * 110.72022 * 277.13434 * 5 4 2 7 7 N 1.46901 * 110.72208 * 153.86260 * 5 4 2 8 8 C 1.46904 * 111.00043 * 154.99628 * 7 5 4 9 9 C 1.50698 * 109.47221 * 180.02562 * 8 7 5 10 10 C 1.35314 * 126.13025 * 95.02409 * 9 8 7 11 11 C 1.39863 * 107.92182 * 179.97438 * 10 9 8 12 12 N 1.30832 * 108.20729 * 359.97438 * 11 10 9 13 13 N 1.34955 * 126.12577 * 274.72076 * 9 8 7 14 14 C 1.46492 * 126.03550 * 0.02987 * 13 9 8 15 15 C 1.54325 * 102.94303 * 35.49976 * 5 4 2 16 16 N 1.47290 * 107.30599 * 337.81911 * 15 5 4 17 17 C 1.34774 * 125.79121 * 178.92556 * 16 15 5 18 18 O 1.21284 * 119.99787 * 179.97438 * 17 16 15 19 19 C 1.50700 * 120.00339 * 359.97438 * 17 16 15 20 20 S 1.81001 * 109.47158 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99837 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00340 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00216 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99790 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00322 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46949 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46981 * 119.99787 * 25 23 21 28 28 H 1.48497 * 109.47134 * 239.99653 * 25 23 21 29 29 H 1.09000 * 109.47320 * 180.70519 * 1 2 3 30 30 H 1.09008 * 109.46775 * 300.69890 * 1 2 3 31 31 H 1.08999 * 109.47379 * 60.69838 * 1 2 3 32 32 H 1.09008 * 111.00494 * 322.11833 * 4 2 1 33 33 H 1.08999 * 111.00647 * 85.96667 * 4 2 1 34 34 H 1.00893 * 111.00195 * 278.95557 * 7 5 4 35 35 H 1.08996 * 109.47036 * 300.00639 * 8 7 5 36 36 H 1.08999 * 109.46620 * 60.00093 * 8 7 5 37 37 H 1.07998 * 126.03474 * 359.94852 * 10 9 8 38 38 H 1.08005 * 125.89600 * 179.97438 * 11 10 9 39 39 H 1.09001 * 109.47348 * 90.00284 * 14 13 9 40 40 H 1.09006 * 109.46885 * 210.00554 * 14 13 9 41 41 H 1.09003 * 109.47634 * 330.00149 * 14 13 9 42 42 H 1.09004 * 109.88239 * 97.22707 * 15 5 4 43 43 H 1.08995 * 109.88239 * 218.23629 * 15 5 4 44 44 H 1.09001 * 109.47139 * 300.00399 * 19 17 16 45 45 H 1.09007 * 109.46778 * 60.00102 * 19 17 16 46 46 H 0.97001 * 119.99663 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0691 -0.7746 -1.2284 5 6 3.4788 -1.1966 -0.7365 6 1 4.1942 -0.3860 -0.8750 7 7 3.9284 -2.4121 -1.4281 8 6 5.3950 -2.4948 -1.4476 9 6 5.8177 -3.7514 -2.1641 10 6 6.1515 -3.8504 -3.4716 11 6 6.4808 -5.1846 -3.7319 12 7 6.3501 -5.8623 -2.6205 13 7 5.9368 -4.9785 -1.6151 14 6 5.6771 -5.3255 -0.2158 15 6 3.2523 -1.4745 0.7645 16 7 2.0431 -0.7372 1.1690 17 6 1.4960 -0.7356 2.4008 18 8 0.4944 -0.0873 2.6186 19 6 2.1287 -1.5394 3.5074 20 16 1.1680 -1.3339 5.0276 21 6 2.1045 -2.3499 6.1209 22 1 2.9830 -2.8646 5.7606 23 6 1.7126 -2.4898 7.4451 24 7 0.6416 -1.8630 7.8842 25 14 2.7049 -3.5675 8.6041 26 1 3.8542 -4.1561 7.8705 27 1 3.2080 -2.7464 9.7345 28 1 1.8419 -4.6561 9.1286 29 1 -0.3634 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8837 31 1 -0.3634 0.5029 -0.8962 32 1 1.4521 -1.6477 -1.4414 33 1 2.1380 -0.1247 -2.1007 34 1 3.5252 -3.2366 -1.0090 35 1 5.8009 -1.6268 -1.9670 36 1 5.7713 -2.5151 -0.4249 37 1 6.1614 -3.0421 -4.1878 38 1 6.7898 -5.5861 -4.6858 39 1 4.6313 -5.6104 -0.1001 40 1 6.3153 -6.1596 0.0762 41 1 5.8914 -4.4649 0.4179 42 1 3.1060 -2.5426 0.9258 43 1 4.1106 -1.1271 1.3395 44 1 2.1449 -2.5929 3.2278 45 1 3.1486 -1.1915 3.6718 46 1 0.3675 -1.9610 8.8095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331958100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:42 Heat of formation + Delta-G solvation = 53.247027 kcal Electronic energy + Delta-G solvation = -26621.163240 eV Core-core repulsion = 22867.033952 eV Total energy + Delta-G solvation = -3754.129288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.53678 -40.19726 -37.86593 -35.58869 -33.49903 -32.48179 -32.23960 -31.59920 -29.20509 -28.67578 -27.04614 -25.88265 -25.54933 -25.27752 -22.29015 -21.50256 -21.22163 -20.10386 -19.03919 -17.67334 -17.30003 -16.89308 -16.42698 -15.83057 -15.68493 -15.05762 -14.91084 -14.86615 -14.85558 -14.27477 -14.04896 -13.76872 -13.54020 -13.23511 -13.09620 -12.94702 -12.85019 -12.73910 -12.68787 -12.62042 -12.20570 -12.12970 -11.84591 -11.60955 -11.17424 -11.11499 -11.06720 -10.96043 -10.86685 -10.80629 -9.85702 -9.66151 -9.30324 -9.12499 -8.97726 -8.79352 -8.54907 -8.28778 -6.55721 -6.26935 -3.97805 1.49864 2.19133 2.53572 2.82474 3.00506 3.17106 3.20834 3.26289 3.50762 3.72452 4.10235 4.14678 4.22841 4.26916 4.33381 4.57367 4.71159 4.78865 4.86770 4.91901 4.97505 5.03627 5.08317 5.09027 5.14361 5.28887 5.35718 5.37713 5.42227 5.44213 5.57199 5.63908 5.70271 5.77845 5.81926 5.84518 6.04606 6.13035 6.28881 6.35832 6.41897 6.62444 6.68213 6.74780 7.40983 7.53961 7.62506 8.29647 8.52567 9.18398 10.80515 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010143 B = 0.002804 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.741275 B = 9984.179802 C =12477.432296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 H 0.073 0.927 4 C -0.114 4.114 5 C 0.076 3.924 6 H 0.098 0.902 7 N -0.668 5.668 8 C 0.120 3.880 9 C 0.083 3.917 10 C -0.253 4.253 11 C 0.042 3.958 12 N -0.296 5.296 13 N -0.370 5.370 14 C 0.094 3.906 15 C 0.076 3.924 16 N -0.621 5.621 17 C 0.550 3.450 18 O -0.509 6.509 19 C -0.147 4.147 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.866 5.866 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.279 1.279 28 H -0.279 1.279 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.345 0.655 35 H 0.102 0.898 36 H 0.047 0.953 37 H 0.148 0.852 38 H 0.183 0.817 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.128 -1.320 -23.230 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.091 0.909 4 C -0.153 4.153 5 C -0.034 4.034 6 H 0.116 0.884 7 N -0.299 5.299 8 C -0.010 4.010 9 C -0.044 4.044 10 C -0.283 4.283 11 C -0.143 4.143 12 N -0.117 5.117 13 N -0.153 5.153 14 C -0.047 4.047 15 C -0.049 4.049 16 N -0.359 5.359 17 C 0.338 3.662 18 O -0.383 6.383 19 C -0.298 4.298 20 S 0.168 5.832 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.197 1.197 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.165 0.835 35 H 0.120 0.880 36 H 0.065 0.935 37 H 0.165 0.835 38 H 0.200 0.800 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.517 -1.236 -22.574 24.529 hybrid contribution 2.036 -1.066 1.091 2.544 sum 11.553 -2.302 -21.484 24.501 Atomic orbital electron populations 1.22150 0.93648 1.02893 1.03457 1.21889 0.95655 0.95361 0.84023 0.90914 1.22877 0.94642 1.00768 0.97008 1.22686 0.98020 0.92932 0.89782 0.88367 1.60611 1.06411 1.04921 1.57931 1.20576 0.88677 0.93540 0.98249 1.20890 1.01527 0.87559 0.94445 1.21239 1.13732 0.98092 0.95251 1.23854 1.00074 0.92946 0.97433 1.77393 1.21404 1.16408 0.96522 1.48536 1.52287 1.05455 1.09062 1.21920 1.03064 1.03278 0.76466 1.22790 0.88713 0.96938 0.96495 1.48549 1.28123 1.49748 1.09494 1.19974 0.83710 0.81312 0.81157 1.90658 1.24392 1.42389 1.80837 1.23517 1.04455 1.01617 1.00182 1.85415 1.36171 1.64327 0.97315 1.22875 1.14781 1.33571 0.97101 0.91003 1.24996 0.95344 0.95949 0.97301 1.70027 1.23090 1.40527 1.16516 0.86120 0.79574 0.79716 0.80091 1.19669 1.20524 1.20518 0.92651 0.89250 0.92338 0.90006 0.89550 0.83516 0.87956 0.93517 0.83468 0.80036 0.90405 0.88975 0.89517 0.91686 0.91345 0.89636 0.89566 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 8.65 37.16 0.32 -1.74 16 2 C 0.13 1.51 3.76 -66.42 -0.25 1.26 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -0.93 6.19 -24.58 -0.15 -1.08 16 5 C 0.08 0.55 3.28 -65.88 -0.22 0.33 16 6 H 0.10 0.61 7.83 -51.93 -0.41 0.20 16 7 N -0.67 -4.58 6.37 -106.06 -0.68 -5.25 16 8 C 0.12 0.74 5.72 -4.97 -0.03 0.71 16 9 C 0.08 0.70 6.44 -82.26 -0.53 0.17 16 10 C -0.25 -2.13 10.72 -40.02 -0.43 -2.56 16 11 C 0.04 0.38 12.02 -17.37 -0.21 0.17 16 12 N -0.30 -3.28 12.58 30.62 0.39 -2.90 16 13 N -0.37 -3.47 4.01 -63.89 -0.26 -3.72 16 14 C 0.09 0.63 11.27 59.84 0.67 1.30 16 15 C 0.08 0.73 6.23 -2.92 -0.02 0.71 16 16 N -0.62 -8.38 3.25 -162.83 -0.53 -8.91 16 17 C 0.55 10.17 7.65 -10.99 -0.08 10.09 16 18 O -0.51 -11.19 13.54 5.55 0.08 -11.12 16 19 C -0.15 -2.93 5.36 36.01 0.19 -2.73 16 20 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 21 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 22 H 0.07 1.90 7.80 -52.48 -0.41 1.50 16 23 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 25 Si 0.92 21.08 29.55 -169.99 -5.02 16.05 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.42 5.99 -51.92 -0.31 1.11 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.73 8.06 -51.92 -0.42 0.31 16 33 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.35 2.52 8.04 -39.30 -0.32 2.20 16 35 H 0.10 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.05 0.26 7.23 -51.93 -0.38 -0.12 16 37 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.18 1.06 8.06 -52.48 -0.42 0.63 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.43 7.15 -51.93 -0.37 0.06 16 42 H 0.06 0.60 7.49 -51.93 -0.39 0.21 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 45 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 46 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 392.09 15.07 5.91 5.91 Total: -1.00 -35.45 392.09 -9.32 -44.78 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.20 Total: 0.12 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.53 Total: -6.08 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.34 Total: -45.88 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.45 -9.32 -44.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331958100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.024 kcal (2) G-P(sol) polarization free energy of solvation -35.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds