Wall clock time and date at job start Tue Mar 31 2020 21:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.32758 * 2 1 4 4 C 1.54908 * 110.36604 * 237.76424 * 2 1 3 5 5 C 1.55154 * 101.58289 * 204.04410 * 4 2 1 6 6 H 1.08997 * 110.72022 * 277.13434 * 5 4 2 7 7 N 1.46901 * 110.72208 * 153.86260 * 5 4 2 8 8 C 1.46904 * 111.00043 * 154.99628 * 7 5 4 9 9 C 1.50698 * 109.47221 * 180.02562 * 8 7 5 10 10 C 1.35314 * 126.13025 * 95.02409 * 9 8 7 11 11 C 1.39863 * 107.92182 * 179.97438 * 10 9 8 12 12 N 1.30832 * 108.20729 * 359.97438 * 11 10 9 13 13 N 1.34955 * 126.12577 * 274.72076 * 9 8 7 14 14 C 1.46492 * 126.03550 * 0.02987 * 13 9 8 15 15 C 1.54325 * 102.94303 * 35.49976 * 5 4 2 16 16 N 1.47290 * 107.30599 * 337.81911 * 15 5 4 17 17 C 1.34774 * 125.79121 * 178.92556 * 16 15 5 18 18 O 1.21284 * 119.99787 * 179.97438 * 17 16 15 19 19 C 1.50700 * 120.00339 * 359.97438 * 17 16 15 20 20 S 1.81001 * 109.47158 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99837 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00340 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00216 * 180.02562 * 21 20 19 24 24 N 1.31635 * 119.99790 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00322 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46949 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46981 * 119.99787 * 25 23 21 28 28 H 1.48497 * 109.47134 * 239.99653 * 25 23 21 29 29 H 1.09000 * 109.47320 * 180.70519 * 1 2 3 30 30 H 1.09008 * 109.46775 * 300.69890 * 1 2 3 31 31 H 1.08999 * 109.47379 * 60.69838 * 1 2 3 32 32 H 1.09008 * 111.00494 * 322.11833 * 4 2 1 33 33 H 1.08999 * 111.00647 * 85.96667 * 4 2 1 34 34 H 1.00893 * 111.00195 * 278.95557 * 7 5 4 35 35 H 1.08996 * 109.47036 * 300.00639 * 8 7 5 36 36 H 1.08999 * 109.46620 * 60.00093 * 8 7 5 37 37 H 1.07998 * 126.03474 * 359.94852 * 10 9 8 38 38 H 1.08005 * 125.89600 * 179.97438 * 11 10 9 39 39 H 1.09001 * 109.47348 * 90.00284 * 14 13 9 40 40 H 1.09006 * 109.46885 * 210.00554 * 14 13 9 41 41 H 1.09003 * 109.47634 * 330.00149 * 14 13 9 42 42 H 1.09004 * 109.88239 * 97.22707 * 15 5 4 43 43 H 1.08995 * 109.88239 * 218.23629 * 15 5 4 44 44 H 1.09001 * 109.47139 * 300.00399 * 19 17 16 45 45 H 1.09007 * 109.46778 * 60.00102 * 19 17 16 46 46 H 0.97001 * 119.99663 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0691 -0.7746 -1.2284 5 6 3.4788 -1.1966 -0.7365 6 1 4.1942 -0.3860 -0.8750 7 7 3.9284 -2.4121 -1.4281 8 6 5.3950 -2.4948 -1.4476 9 6 5.8177 -3.7514 -2.1641 10 6 6.1515 -3.8504 -3.4716 11 6 6.4808 -5.1846 -3.7319 12 7 6.3501 -5.8623 -2.6205 13 7 5.9368 -4.9785 -1.6151 14 6 5.6771 -5.3255 -0.2158 15 6 3.2523 -1.4745 0.7645 16 7 2.0431 -0.7372 1.1690 17 6 1.4960 -0.7356 2.4008 18 8 0.4944 -0.0873 2.6186 19 6 2.1287 -1.5394 3.5074 20 16 1.1680 -1.3339 5.0276 21 6 2.1045 -2.3499 6.1209 22 1 2.9830 -2.8646 5.7606 23 6 1.7126 -2.4898 7.4451 24 7 0.6416 -1.8630 7.8842 25 14 2.7049 -3.5675 8.6041 26 1 3.8542 -4.1561 7.8705 27 1 3.2080 -2.7464 9.7345 28 1 1.8419 -4.6561 9.1286 29 1 -0.3634 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8837 31 1 -0.3634 0.5029 -0.8962 32 1 1.4521 -1.6477 -1.4414 33 1 2.1380 -0.1247 -2.1007 34 1 3.5252 -3.2366 -1.0090 35 1 5.8009 -1.6268 -1.9670 36 1 5.7713 -2.5151 -0.4249 37 1 6.1614 -3.0421 -4.1878 38 1 6.7898 -5.5861 -4.6858 39 1 4.6313 -5.6104 -0.1001 40 1 6.3153 -6.1596 0.0762 41 1 5.8914 -4.4649 0.4179 42 1 3.1060 -2.5426 0.9258 43 1 4.1106 -1.1271 1.3395 44 1 2.1449 -2.5929 3.2278 45 1 3.1486 -1.1915 3.6718 46 1 0.3675 -1.9610 8.8095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331958100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:41 Heat of formation + Delta-G solvation = 28.121158 kcal Electronic energy + Delta-G solvation = -26622.252780 eV Core-core repulsion = 22867.033952 eV Total energy + Delta-G solvation = -3755.218828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.14135 -41.27317 -38.95384 -36.37566 -34.60673 -34.09092 -33.37975 -32.28793 -30.28862 -29.76403 -27.68804 -27.59138 -26.72709 -25.91508 -23.29884 -22.13804 -21.88411 -20.70067 -20.41633 -19.45602 -18.16888 -17.63310 -17.53075 -16.90624 -16.60834 -16.59671 -16.21291 -15.89212 -15.63671 -15.41527 -15.02796 -14.69571 -14.55986 -14.35259 -14.17237 -13.80803 -13.66951 -13.53061 -13.44641 -13.36905 -13.21384 -13.16766 -12.99397 -12.97048 -12.91280 -12.59492 -12.31465 -12.00622 -11.73169 -11.70476 -11.53209 -11.18003 -10.66428 -10.30062 -10.29388 -9.75773 -9.52015 -9.36670 -8.69624 -8.36887 -6.15200 0.88974 1.22788 1.39687 1.43791 1.54805 1.58522 1.65135 1.92215 2.07334 2.25060 2.97489 3.06365 3.25115 3.46550 3.54675 3.70059 3.76509 3.94521 4.03634 4.12384 4.14649 4.24650 4.27774 4.32010 4.36997 4.39015 4.45186 4.58548 4.62466 4.68723 4.71787 4.77034 4.83449 4.89117 4.95498 5.07466 5.23764 5.28786 5.29059 5.39390 5.58455 5.77613 5.88116 6.13516 6.17516 6.19163 6.42118 6.78692 7.04475 7.16243 8.72556 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010143 B = 0.002804 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.741275 B = 9984.179802 C =12477.432296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 H 0.083 0.917 4 C -0.102 4.102 5 C 0.093 3.907 6 H 0.121 0.879 7 N -0.667 5.667 8 C 0.123 3.877 9 C 0.081 3.919 10 C -0.265 4.265 11 C 0.035 3.965 12 N -0.340 5.340 13 N -0.379 5.379 14 C 0.087 3.913 15 C 0.066 3.934 16 N -0.612 5.612 17 C 0.546 3.454 18 O -0.556 6.556 19 C -0.119 4.119 20 S -0.150 6.150 21 C -0.543 4.543 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.255 1.255 27 H -0.274 1.274 28 H -0.275 1.275 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.343 0.657 35 H 0.119 0.881 36 H 0.058 0.942 37 H 0.165 0.835 38 H 0.204 0.796 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.622 -1.637 -24.958 28.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.025 3.975 3 H 0.101 0.899 4 C -0.141 4.141 5 C -0.018 4.018 6 H 0.138 0.862 7 N -0.297 5.297 8 C -0.006 4.006 9 C -0.047 4.047 10 C -0.295 4.295 11 C -0.149 4.149 12 N -0.162 5.162 13 N -0.162 5.162 14 C -0.053 4.053 15 C -0.058 4.058 16 N -0.348 5.348 17 C 0.333 3.667 18 O -0.434 6.434 19 C -0.271 4.271 20 S 0.077 5.923 21 C -0.691 4.691 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.200 1.200 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.129 0.871 34 H 0.162 0.838 35 H 0.137 0.863 36 H 0.076 0.924 37 H 0.182 0.818 38 H 0.221 0.779 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.052 -1.568 -24.361 27.225 hybrid contribution 1.271 -0.944 1.467 2.159 sum 13.323 -2.512 -22.894 26.608 Atomic orbital electron populations 1.22067 0.95027 1.01743 1.02934 1.22149 0.94697 0.96300 0.84322 0.89886 1.22815 0.94781 1.00460 0.96008 1.22615 0.97947 0.93689 0.87566 0.86155 1.60593 1.06935 1.04661 1.57551 1.20667 0.88106 0.92997 0.98873 1.21293 1.00866 0.87873 0.94687 1.21565 1.13804 0.98325 0.95829 1.24338 0.99338 0.93413 0.97839 1.77333 1.23236 1.17995 0.97669 1.48757 1.52278 1.05677 1.09537 1.22099 1.03287 1.04148 0.75783 1.23168 0.87178 0.96859 0.98622 1.48487 1.28772 1.49200 1.08324 1.19706 0.83411 0.81064 0.82472 1.90657 1.26408 1.44393 1.81948 1.23308 1.03738 1.03036 0.96985 1.85607 1.39392 1.65128 1.02157 1.23197 1.14909 1.33456 0.97561 0.89974 1.26133 0.96442 0.97355 0.99256 1.70192 1.25120 1.42348 1.17096 0.84909 0.78150 0.77502 0.77411 1.17888 1.19954 1.20000 0.93984 0.93102 0.89548 0.90691 0.87068 0.83751 0.86315 0.92377 0.81783 0.77935 0.90053 0.89177 0.87659 0.91121 0.90143 0.88070 0.87849 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 8.65 71.98 0.62 -3.34 16 2 C 0.13 2.61 3.76 45.47 0.17 2.78 16 3 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 4 C -0.10 -1.29 6.19 31.98 0.20 -1.09 16 5 C 0.09 0.94 3.28 46.10 0.15 1.09 16 6 H 0.12 0.82 7.83 -2.39 -0.02 0.80 16 7 N -0.67 -6.59 6.37 -489.45 -3.12 -9.71 16 8 C 0.12 1.05 5.72 85.56 0.49 1.54 16 9 C 0.08 1.15 6.44 41.40 0.27 1.41 16 10 C -0.27 -3.87 10.72 21.99 0.24 -3.63 16 11 C 0.04 0.59 12.02 85.24 1.02 1.61 16 12 N -0.34 -7.29 12.58 -57.03 -0.72 -8.00 16 13 N -0.38 -6.51 4.01 -356.04 -1.43 -7.94 16 14 C 0.09 1.03 11.27 127.77 1.44 2.47 16 15 C 0.07 1.05 6.23 86.68 0.54 1.59 16 16 N -0.61 -15.52 3.25 -787.47 -2.56 -18.08 16 17 C 0.55 20.20 7.65 87.66 0.67 20.87 16 18 O -0.56 -25.46 13.54 -3.04 -0.04 -25.50 16 19 C -0.12 -4.71 5.36 71.24 0.38 -4.33 16 20 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16 21 C -0.54 -30.60 9.50 67.95 0.65 -29.96 16 22 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 23 C 0.01 0.73 5.49 84.86 0.47 1.19 16 24 N -0.91 -55.62 13.22 21.65 0.29 -55.33 16 25 Si 1.00 42.97 29.55 68.60 2.03 45.00 16 26 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.68 5.99 -2.38 -0.01 1.67 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.11 8.06 -2.38 -0.02 1.09 16 33 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.34 3.90 8.04 -89.70 -0.72 3.18 16 35 H 0.12 0.68 8.08 -2.39 -0.02 0.66 16 36 H 0.06 0.39 7.23 -2.39 -0.02 0.38 16 37 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 38 H 0.20 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.11 0.78 7.15 -2.39 -0.02 0.77 16 42 H 0.07 1.09 7.49 -2.38 -0.02 1.07 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 44 H 0.10 3.64 8.14 -2.40 -0.02 3.62 16 45 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 46 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -81.06 392.09 0.85 -80.21 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.26 Total: 16.59 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 7.30 Total: -7.79 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -7.54 Total: -99.06 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.04 Total: -25.50 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Total: -81.06 0.85 -80.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331958100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.329 kcal (2) G-P(sol) polarization free energy of solvation -81.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds