Wall clock time and date at job start Tue Mar 31 2020 21:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.87411 * 2 1 4 4 C 1.54329 * 110.01206 * 121.10276 * 2 1 3 5 5 C 1.55156 * 102.94072 * 141.68304 * 4 2 1 6 6 H 1.08996 * 111.00334 * 82.60999 * 5 4 2 7 7 N 1.46901 * 111.00026 * 206.42044 * 5 4 2 8 8 C 1.46900 * 111.00039 * 204.99946 * 7 5 4 9 9 C 1.50697 * 109.47090 * 180.02562 * 8 7 5 10 10 C 1.35316 * 126.12653 * 94.69141 * 9 8 7 11 11 C 1.39875 * 107.92334 * 179.90511 * 10 9 8 12 12 N 1.30840 * 108.19624 * 0.35828 * 11 10 9 13 13 N 1.34949 * 126.12985 * 275.00062 * 9 8 7 14 14 C 1.46500 * 126.03542 * 359.94543 * 13 9 8 15 15 C 1.55124 * 101.48615 * 324.32969 * 5 4 2 16 16 N 1.47025 * 109.88125 * 238.98406 * 2 1 3 17 17 C 1.34774 * 125.64574 * 61.45183 * 16 2 1 18 18 O 1.21279 * 120.00472 * 359.97438 * 17 16 2 19 19 C 1.50706 * 120.00020 * 180.02562 * 17 16 2 20 20 S 1.81002 * 109.47200 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99878 * 179.97438 * 20 19 17 22 22 H 1.08006 * 120.00031 * 359.97438 * 21 20 19 23 23 C 1.38801 * 120.00096 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99737 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99933 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47767 * 59.99657 * 25 23 21 27 27 H 1.48505 * 109.46944 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46958 * 299.99344 * 25 23 21 29 29 H 1.09005 * 109.46876 * 179.56068 * 1 2 3 30 30 H 1.08995 * 109.46800 * 299.55804 * 1 2 3 31 31 H 1.08997 * 109.47253 * 59.56293 * 1 2 3 32 32 H 1.08998 * 110.71315 * 260.04478 * 4 2 1 33 33 H 1.08999 * 110.71847 * 23.13944 * 4 2 1 34 34 H 1.00902 * 110.99850 * 81.04697 * 7 5 4 35 35 H 1.09001 * 109.47091 * 299.99918 * 8 7 5 36 36 H 1.08997 * 109.47008 * 60.00250 * 8 7 5 37 37 H 1.07998 * 126.04086 * 0.02995 * 10 9 8 38 38 H 1.07997 * 125.90256 * 180.14156 * 11 10 9 39 39 H 1.08998 * 109.47578 * 89.99480 * 14 13 9 40 40 H 1.09003 * 109.47312 * 210.00455 * 14 13 9 41 41 H 1.09002 * 109.46780 * 329.99874 * 14 13 9 42 42 H 1.09006 * 110.49792 * 278.45237 * 15 5 4 43 43 H 1.08998 * 110.34245 * 156.06652 * 15 5 4 44 44 H 1.09001 * 109.46953 * 299.99667 * 19 17 16 45 45 H 1.09000 * 109.47318 * 59.99264 * 19 17 16 46 46 H 0.97001 * 119.99701 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0582 -0.7491 1.2416 5 6 3.2919 -1.5108 0.6892 6 1 4.1684 -0.8636 0.6570 7 7 3.5619 -2.7192 1.4797 8 6 4.9754 -3.1071 1.3823 9 6 5.2135 -4.3480 2.2035 10 6 5.1964 -5.6219 1.7476 11 6 5.4657 -6.4693 2.8274 12 7 5.6306 -5.7309 3.8949 13 7 5.4761 -4.3883 3.5266 14 6 5.5816 -3.2319 4.4199 15 6 2.8131 -1.8793 -0.7395 16 7 2.0301 -0.7124 -1.1849 17 6 1.8050 -0.3602 -2.4662 18 8 1.1380 0.6211 -2.7172 19 6 2.3811 -1.1865 -3.5872 20 16 1.9054 -0.4626 -5.1765 21 6 2.6905 -1.5942 -6.2754 22 1 3.2546 -2.4266 -5.8811 23 6 2.5849 -1.4154 -7.6478 24 7 1.8979 -0.4007 -8.1283 25 14 3.4167 -2.6155 -8.8127 26 1 2.8769 -3.9802 -8.5862 27 1 3.1537 -2.2063 -10.2158 28 1 4.8805 -2.6144 -8.5624 29 1 -0.3633 -1.0277 -0.0079 30 1 -0.3633 0.5069 0.8939 31 1 -0.3633 0.5206 -0.8860 32 1 2.3558 -0.0452 2.0189 33 1 1.3093 -1.4450 1.6196 34 1 2.9586 -3.4775 1.1984 35 1 5.2261 -3.3076 0.3406 36 1 5.6011 -2.2972 1.7573 37 1 5.0099 -5.9299 0.7294 38 1 5.5236 -7.5469 2.7876 39 1 4.6013 -3.0061 4.8394 40 1 6.2788 -3.4584 5.2267 41 1 5.9435 -2.3707 3.8581 42 1 2.1853 -2.7701 -0.7138 43 1 3.6682 -2.0359 -1.3971 44 1 3.4680 -1.2021 -3.5055 45 1 1.9973 -2.2046 -3.5226 46 1 1.8238 -0.2759 -9.0874 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331958102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:45 Heat of formation + Delta-G solvation = 49.842980 kcal Electronic energy + Delta-G solvation = -26399.111663 eV Core-core repulsion = 22644.834764 eV Total energy + Delta-G solvation = -3754.276899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53007 -40.16657 -37.83054 -35.62252 -33.50917 -32.45496 -32.19435 -31.58507 -29.18736 -28.67377 -27.03078 -25.97149 -25.52399 -25.26678 -22.24506 -21.45568 -21.24374 -20.09976 -19.00692 -17.69698 -17.47671 -16.81775 -16.43718 -15.74701 -15.56526 -14.86627 -14.82399 -14.78899 -14.58580 -14.36833 -14.29642 -13.88101 -13.68968 -13.24655 -13.16038 -13.00252 -12.89143 -12.71522 -12.65249 -12.50452 -12.23245 -11.99749 -11.86897 -11.68025 -11.09920 -11.06413 -11.04395 -10.97900 -10.85793 -10.78820 -9.85327 -9.66178 -9.43278 -9.08367 -8.99600 -8.81458 -8.55103 -8.26926 -6.53261 -6.23939 -3.95005 1.49247 2.21712 2.50977 2.84056 3.02778 3.21448 3.22870 3.27027 3.51030 3.74886 4.13042 4.17660 4.24783 4.29784 4.38984 4.56802 4.73677 4.81097 4.89824 4.95617 4.97762 5.04434 5.07381 5.11079 5.14695 5.29257 5.36284 5.39498 5.42250 5.45910 5.58088 5.60614 5.66450 5.72604 5.79822 5.84729 6.05195 6.08339 6.26572 6.34702 6.41652 6.51913 6.67626 6.79527 7.40979 7.56361 7.63550 8.32274 8.53396 9.21101 10.83412 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011375 B = 0.002505 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.014169 B =11176.742799 C =13320.910803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 H 0.075 0.925 4 C -0.113 4.113 5 C 0.076 3.924 6 H 0.097 0.903 7 N -0.671 5.671 8 C 0.117 3.883 9 C 0.088 3.912 10 C -0.268 4.268 11 C 0.045 3.955 12 N -0.299 5.299 13 N -0.361 5.361 14 C 0.104 3.896 15 C 0.075 3.925 16 N -0.620 5.620 17 C 0.549 3.451 18 O -0.511 6.511 19 C -0.147 4.147 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.071 0.929 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.282 1.282 28 H -0.274 1.274 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.351 0.649 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.147 0.853 38 H 0.183 0.817 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.347 -6.563 25.241 26.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.093 0.907 4 C -0.151 4.151 5 C -0.035 4.035 6 H 0.115 0.885 7 N -0.303 5.303 8 C -0.013 4.013 9 C -0.040 4.040 10 C -0.299 4.299 11 C -0.140 4.140 12 N -0.121 5.121 13 N -0.143 5.143 14 C -0.038 4.038 15 C -0.051 4.051 16 N -0.358 5.358 17 C 0.337 3.663 18 O -0.385 6.385 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.171 0.829 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.165 0.835 38 H 0.200 0.800 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.623 -4.494 26.563 27.522 hybrid contribution 1.185 -2.425 -2.251 3.514 sum 6.808 -6.919 24.313 26.179 Atomic orbital electron populations 1.22136 0.94706 1.02246 1.02984 1.21538 0.94869 0.96450 0.84054 0.90723 1.22710 0.96885 0.99155 0.96383 1.22850 0.98863 0.92024 0.89793 0.88534 1.60566 1.04087 1.07673 1.57927 1.20545 0.90674 0.92628 0.97453 1.20878 1.01291 0.96650 0.85220 1.21329 1.16176 0.91151 1.01211 1.23826 0.99578 1.00301 0.90327 1.77379 1.24641 0.86477 1.23557 1.48458 1.53955 1.05737 1.06177 1.21826 1.03617 0.84537 0.93789 1.23037 0.95828 0.89719 0.96478 1.48487 1.53919 1.28385 1.04988 1.20013 0.79827 0.85010 0.81400 1.90697 1.38306 1.26988 1.82512 1.23517 1.03514 1.02620 1.00116 1.85403 1.69416 1.37908 0.90533 1.22807 1.38214 1.14311 0.93096 0.91039 1.24991 0.95232 0.95977 0.97349 1.70007 1.38284 1.28141 1.13801 0.86226 0.79630 0.80538 0.79125 1.19922 1.20779 1.19930 0.92658 0.91985 0.90805 0.89902 0.89955 0.82902 0.91702 0.89559 0.83518 0.80036 0.90350 0.89658 0.89576 0.91331 0.90432 0.89502 0.89468 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.11 37.16 0.34 -1.57 16 2 C 0.13 1.52 3.45 -66.94 -0.23 1.29 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 4 C -0.11 -0.86 6.18 -24.89 -0.15 -1.02 16 5 C 0.08 0.54 3.40 -65.45 -0.22 0.32 16 6 H 0.10 0.68 7.83 -51.93 -0.41 0.27 16 7 N -0.67 -4.23 6.40 -105.61 -0.68 -4.91 16 8 C 0.12 0.72 5.72 -4.98 -0.03 0.69 16 9 C 0.09 0.72 6.44 -82.26 -0.53 0.19 16 10 C -0.27 -2.26 10.72 -40.01 -0.43 -2.69 16 11 C 0.04 0.40 12.03 -17.36 -0.21 0.19 16 12 N -0.30 -3.19 12.58 30.63 0.39 -2.80 16 13 N -0.36 -3.20 4.01 -63.88 -0.26 -3.46 16 14 C 0.10 0.58 11.27 59.85 0.67 1.25 16 15 C 0.08 0.73 6.29 -2.42 -0.02 0.71 16 16 N -0.62 -8.43 3.06 -162.87 -0.50 -8.93 16 17 C 0.55 10.30 7.66 -10.98 -0.08 10.22 16 18 O -0.51 -11.53 14.89 5.56 0.08 -11.45 16 19 C -0.15 -2.96 5.16 36.01 0.19 -2.78 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 21 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 22 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 25 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.12 6.87 -51.93 -0.36 0.76 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.62 7.85 -51.93 -0.41 0.22 16 34 H 0.35 2.28 8.18 -39.29 -0.32 1.96 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.46 7.19 -51.93 -0.37 0.08 16 37 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.33 7.15 -51.93 -0.37 -0.04 16 42 H 0.07 0.62 7.75 -51.93 -0.40 0.22 16 43 H 0.08 0.75 7.48 -51.93 -0.39 0.36 16 44 H 0.09 1.62 7.85 -51.92 -0.41 1.21 16 45 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 393.54 15.07 5.93 5.93 Total: -1.00 -35.77 393.54 -9.25 -45.02 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.21 Total: -0.48 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -0.51 Total: -6.05 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.31 Total: -45.36 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.77 -9.25 -45.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331958102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.863 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds