Wall clock time and date at job start Tue Mar 31 2020 21:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.87411 * 2 1 4 4 C 1.54329 * 110.01206 * 121.10276 * 2 1 3 5 5 C 1.55156 * 102.94072 * 141.68304 * 4 2 1 6 6 H 1.08996 * 111.00334 * 82.60999 * 5 4 2 7 7 N 1.46901 * 111.00026 * 206.42044 * 5 4 2 8 8 C 1.46900 * 111.00039 * 204.99946 * 7 5 4 9 9 C 1.50697 * 109.47090 * 180.02562 * 8 7 5 10 10 C 1.35316 * 126.12653 * 94.69141 * 9 8 7 11 11 C 1.39875 * 107.92334 * 179.90511 * 10 9 8 12 12 N 1.30840 * 108.19624 * 0.35828 * 11 10 9 13 13 N 1.34949 * 126.12985 * 275.00062 * 9 8 7 14 14 C 1.46500 * 126.03542 * 359.94543 * 13 9 8 15 15 C 1.55124 * 101.48615 * 324.32969 * 5 4 2 16 16 N 1.47025 * 109.88125 * 238.98406 * 2 1 3 17 17 C 1.34774 * 125.64574 * 61.45183 * 16 2 1 18 18 O 1.21279 * 120.00472 * 359.97438 * 17 16 2 19 19 C 1.50706 * 120.00020 * 180.02562 * 17 16 2 20 20 S 1.81002 * 109.47200 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99878 * 179.97438 * 20 19 17 22 22 H 1.08006 * 120.00031 * 359.97438 * 21 20 19 23 23 C 1.38801 * 120.00096 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99737 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99933 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47767 * 59.99657 * 25 23 21 27 27 H 1.48505 * 109.46944 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46958 * 299.99344 * 25 23 21 29 29 H 1.09005 * 109.46876 * 179.56068 * 1 2 3 30 30 H 1.08995 * 109.46800 * 299.55804 * 1 2 3 31 31 H 1.08997 * 109.47253 * 59.56293 * 1 2 3 32 32 H 1.08998 * 110.71315 * 260.04478 * 4 2 1 33 33 H 1.08999 * 110.71847 * 23.13944 * 4 2 1 34 34 H 1.00902 * 110.99850 * 81.04697 * 7 5 4 35 35 H 1.09001 * 109.47091 * 299.99918 * 8 7 5 36 36 H 1.08997 * 109.47008 * 60.00250 * 8 7 5 37 37 H 1.07998 * 126.04086 * 0.02995 * 10 9 8 38 38 H 1.07997 * 125.90256 * 180.14156 * 11 10 9 39 39 H 1.08998 * 109.47578 * 89.99480 * 14 13 9 40 40 H 1.09003 * 109.47312 * 210.00455 * 14 13 9 41 41 H 1.09002 * 109.46780 * 329.99874 * 14 13 9 42 42 H 1.09006 * 110.49792 * 278.45237 * 15 5 4 43 43 H 1.08998 * 110.34245 * 156.06652 * 15 5 4 44 44 H 1.09001 * 109.46953 * 299.99667 * 19 17 16 45 45 H 1.09000 * 109.47318 * 59.99264 * 19 17 16 46 46 H 0.97001 * 119.99701 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0582 -0.7491 1.2416 5 6 3.2919 -1.5108 0.6892 6 1 4.1684 -0.8636 0.6570 7 7 3.5619 -2.7192 1.4797 8 6 4.9754 -3.1071 1.3823 9 6 5.2135 -4.3480 2.2035 10 6 5.1964 -5.6219 1.7476 11 6 5.4657 -6.4693 2.8274 12 7 5.6306 -5.7309 3.8949 13 7 5.4761 -4.3883 3.5266 14 6 5.5816 -3.2319 4.4199 15 6 2.8131 -1.8793 -0.7395 16 7 2.0301 -0.7124 -1.1849 17 6 1.8050 -0.3602 -2.4662 18 8 1.1380 0.6211 -2.7172 19 6 2.3811 -1.1865 -3.5872 20 16 1.9054 -0.4626 -5.1765 21 6 2.6905 -1.5942 -6.2754 22 1 3.2546 -2.4266 -5.8811 23 6 2.5849 -1.4154 -7.6478 24 7 1.8979 -0.4007 -8.1283 25 14 3.4167 -2.6155 -8.8127 26 1 2.8769 -3.9802 -8.5862 27 1 3.1537 -2.2063 -10.2158 28 1 4.8805 -2.6144 -8.5624 29 1 -0.3633 -1.0277 -0.0079 30 1 -0.3633 0.5069 0.8939 31 1 -0.3633 0.5206 -0.8860 32 1 2.3558 -0.0452 2.0189 33 1 1.3093 -1.4450 1.6196 34 1 2.9586 -3.4775 1.1984 35 1 5.2261 -3.3076 0.3406 36 1 5.6011 -2.2972 1.7573 37 1 5.0099 -5.9299 0.7294 38 1 5.5236 -7.5469 2.7876 39 1 4.6013 -3.0061 4.8394 40 1 6.2788 -3.4584 5.2267 41 1 5.9435 -2.3707 3.8581 42 1 2.1853 -2.7701 -0.7138 43 1 3.6682 -2.0359 -1.3971 44 1 3.4680 -1.2021 -3.5055 45 1 1.9973 -2.2046 -3.5226 46 1 1.8238 -0.2759 -9.0874 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331958102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:44 Heat of formation + Delta-G solvation = 24.494110 kcal Electronic energy + Delta-G solvation = -26400.210872 eV Core-core repulsion = 22644.834764 eV Total energy + Delta-G solvation = -3755.376108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.11916 -41.25612 -38.96176 -36.39765 -34.59526 -34.05634 -33.34501 -32.26306 -30.31013 -29.72935 -27.67251 -27.52016 -26.80672 -25.90223 -23.26162 -22.07088 -21.92773 -20.67812 -20.34812 -19.49774 -18.30611 -17.77861 -17.41331 -16.88903 -16.53985 -16.49411 -16.10482 -15.82728 -15.52878 -15.20400 -14.99648 -14.88097 -14.52764 -14.38805 -14.27387 -13.96896 -13.86651 -13.55081 -13.45032 -13.21618 -13.16253 -13.13665 -13.04879 -12.87026 -12.66014 -12.58499 -12.39414 -11.90512 -11.75744 -11.66494 -11.55371 -11.13668 -10.90532 -10.29733 -10.26693 -9.74971 -9.53505 -9.38469 -8.69063 -8.35350 -6.14193 0.89786 1.23323 1.43492 1.44460 1.54341 1.57550 1.71515 1.89488 2.07006 2.26677 2.98716 3.04395 3.27869 3.49131 3.59324 3.76603 3.79374 3.91020 4.00588 4.15119 4.17602 4.24695 4.29140 4.39780 4.42507 4.44817 4.47005 4.59427 4.64236 4.72514 4.74639 4.78088 4.84128 4.87475 4.97582 5.06323 5.16667 5.24203 5.31490 5.40140 5.50657 5.76859 5.87634 6.16008 6.18428 6.27139 6.40769 6.80077 7.05585 7.14038 8.73629 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011375 B = 0.002505 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.014169 B =11176.742799 C =13320.910803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 H 0.067 0.933 4 C -0.098 4.098 5 C 0.092 3.908 6 H 0.107 0.893 7 N -0.663 5.663 8 C 0.121 3.879 9 C 0.088 3.912 10 C -0.283 4.283 11 C 0.036 3.964 12 N -0.338 5.338 13 N -0.368 5.368 14 C 0.097 3.903 15 C 0.065 3.935 16 N -0.610 5.610 17 C 0.546 3.454 18 O -0.561 6.561 19 C -0.120 4.120 20 S -0.151 6.151 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.262 1.262 27 H -0.279 1.279 28 H -0.261 1.261 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.032 0.968 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.353 0.647 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.159 0.841 38 H 0.201 0.799 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.921 -8.160 26.855 29.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 H 0.085 0.915 4 C -0.137 4.137 5 C -0.019 4.019 6 H 0.125 0.875 7 N -0.295 5.295 8 C -0.009 4.009 9 C -0.042 4.042 10 C -0.313 4.313 11 C -0.149 4.149 12 N -0.161 5.161 13 N -0.150 5.150 14 C -0.044 4.044 15 C -0.059 4.059 16 N -0.345 5.345 17 C 0.334 3.666 18 O -0.440 6.440 19 C -0.271 4.271 20 S 0.077 5.923 21 C -0.694 4.694 22 H 0.101 0.899 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.820 3.180 26 H -0.186 1.186 27 H -0.204 1.204 28 H -0.185 1.185 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.173 0.827 35 H 0.090 0.910 36 H 0.118 0.882 37 H 0.176 0.824 38 H 0.218 0.782 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.125 0.875 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.219 -6.125 28.252 29.796 hybrid contribution 0.685 -1.936 -2.590 3.306 sum 7.905 -8.061 25.662 28.036 Atomic orbital electron populations 1.22089 0.95182 1.02121 1.02268 1.21794 0.94600 0.96618 0.84508 0.91529 1.22650 0.97013 0.99300 0.94689 1.22717 0.98931 0.92417 0.87824 0.87506 1.60552 1.04307 1.07435 1.57197 1.20599 0.90588 0.92217 0.97508 1.21197 1.00523 0.97292 0.85155 1.21602 1.16578 0.91431 1.01738 1.24260 0.98967 1.01426 0.90218 1.77318 1.26242 0.87710 1.24790 1.48738 1.53668 1.05764 1.06854 1.22061 1.04118 0.84226 0.93971 1.23413 0.95717 0.88545 0.98258 1.48408 1.52966 1.29267 1.03855 1.19742 0.79666 0.84357 0.82863 1.90681 1.40667 1.29030 1.83588 1.23309 1.04557 1.02740 0.96468 1.85596 1.70670 1.40254 0.95815 1.23144 1.38179 1.14405 0.93641 0.89944 1.26138 0.95747 0.97915 0.99339 1.70179 1.39964 1.30357 1.14245 0.85006 0.78819 0.77944 0.76252 1.18634 1.20430 1.18535 0.92369 0.89357 0.94902 0.87744 0.89207 0.82740 0.91031 0.88188 0.82375 0.78196 0.89900 0.89421 0.87542 0.90158 0.90005 0.87673 0.87966 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 9.11 71.98 0.66 -2.94 16 2 C 0.13 2.66 3.45 45.34 0.16 2.81 16 3 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 4 C -0.10 -1.14 6.18 31.78 0.20 -0.94 16 5 C 0.09 0.97 3.40 46.38 0.16 1.12 16 6 H 0.11 1.01 7.83 -2.39 -0.02 0.99 16 7 N -0.66 -5.79 6.40 -488.03 -3.12 -8.92 16 8 C 0.12 1.05 5.72 85.56 0.49 1.54 16 9 C 0.09 1.21 6.44 41.40 0.27 1.47 16 10 C -0.28 -4.24 10.72 21.99 0.24 -4.00 16 11 C 0.04 0.59 12.03 85.24 1.03 1.62 16 12 N -0.34 -6.88 12.58 -57.02 -0.72 -7.60 16 13 N -0.37 -5.83 4.01 -356.03 -1.43 -7.26 16 14 C 0.10 0.85 11.27 127.77 1.44 2.30 16 15 C 0.07 1.07 6.29 86.93 0.55 1.61 16 16 N -0.61 -15.70 3.06 -787.60 -2.41 -18.12 16 17 C 0.55 20.57 7.66 87.66 0.67 21.24 16 18 O -0.56 -26.37 14.89 -3.02 -0.05 -26.42 16 19 C -0.12 -4.79 5.16 71.24 0.37 -4.42 16 20 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 21 C -0.55 -31.01 9.50 67.95 0.65 -30.37 16 22 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 23 C 0.01 0.76 5.49 84.86 0.47 1.23 16 24 N -0.91 -55.90 13.22 21.65 0.29 -55.61 16 25 Si 1.00 43.19 29.55 68.60 2.03 45.21 16 26 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 27 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 28 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 29 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.03 1.02 6.87 -2.39 -0.02 1.00 16 32 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.09 0.98 7.85 -2.39 -0.02 0.97 16 34 H 0.35 3.27 8.18 -89.69 -0.73 2.53 16 35 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.10 0.64 7.19 -2.39 -0.02 0.62 16 37 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 38 H 0.20 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.11 0.47 7.15 -2.39 -0.02 0.45 16 42 H 0.08 1.19 7.75 -2.38 -0.02 1.17 16 43 H 0.08 1.32 7.48 -2.39 -0.02 1.30 16 44 H 0.11 3.79 7.85 -2.39 -0.02 3.77 16 45 H 0.10 3.75 8.14 -2.40 -0.02 3.73 16 46 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -81.57 393.54 0.99 -80.58 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.25 Total: 15.41 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 7.32 Total: -7.73 kcal Atomic # 7 Polarization: -90.11 SS G_CDS: -7.40 Total: -97.51 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.05 Total: -26.42 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -81.57 0.99 -80.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331958102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.069 kcal (2) G-P(sol) polarization free energy of solvation -81.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds