Wall clock time and date at job start Tue Mar 31 2020 21:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.87254 * 2 1 4 4 C 1.54320 * 110.01186 * 121.09463 * 2 1 3 5 5 C 1.55164 * 102.94013 * 97.29825 * 4 2 1 6 6 H 1.08999 * 111.00403 * 277.39077 * 5 4 2 7 7 N 1.46900 * 111.00411 * 153.57873 * 5 4 2 8 8 C 1.46900 * 111.00192 * 154.99929 * 7 5 4 9 9 C 1.50691 * 109.47268 * 179.97438 * 8 7 5 10 10 C 1.35324 * 126.12500 * 95.02841 * 9 8 7 11 11 C 1.39865 * 107.91808 * 179.97438 * 10 9 8 12 12 N 1.30838 * 108.20463 * 359.97438 * 11 10 9 13 13 N 1.34949 * 126.13133 * 274.71241 * 9 8 7 14 14 C 1.46496 * 126.03261 * 0.04223 * 13 9 8 15 15 C 1.54686 * 101.67477 * 35.33603 * 5 4 2 16 16 N 1.47025 * 109.88153 * 238.98401 * 2 1 3 17 17 C 1.34777 * 125.65000 * 59.33463 * 16 2 1 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 2 19 19 C 1.50702 * 119.99928 * 180.27553 * 17 16 2 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47035 * 59.99524 * 25 23 21 27 27 H 1.48499 * 109.47381 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46580 * 299.99884 * 25 23 21 29 29 H 1.08996 * 109.46794 * 179.55948 * 1 2 3 30 30 H 1.08994 * 109.47068 * 299.56225 * 1 2 3 31 31 H 1.08998 * 109.46745 * 59.56428 * 1 2 3 32 32 H 1.08996 * 110.72212 * 215.65865 * 4 2 1 33 33 H 1.08997 * 110.71947 * 338.75982 * 4 2 1 34 34 H 1.00902 * 111.00118 * 278.95487 * 7 5 4 35 35 H 1.08998 * 109.47049 * 300.00039 * 8 7 5 36 36 H 1.09000 * 109.46658 * 59.99711 * 8 7 5 37 37 H 1.07996 * 126.03737 * 359.97438 * 10 9 8 38 38 H 1.08004 * 125.89956 * 180.02562 * 11 10 9 39 39 H 1.08995 * 109.47578 * 89.99893 * 14 13 9 40 40 H 1.08999 * 109.46747 * 209.99821 * 14 13 9 41 41 H 1.09003 * 109.47474 * 329.99026 * 14 13 9 42 42 H 1.09005 * 110.39048 * 204.36578 * 15 5 4 43 43 H 1.09004 * 110.23918 * 82.11484 * 15 5 4 44 44 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 45 45 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 46 46 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7489 1.2417 5 6 2.3576 -2.1680 0.6903 6 1 1.4523 -2.7743 0.6598 7 7 3.4047 -2.8296 1.4800 8 6 3.2921 -4.2912 1.3842 9 6 4.3805 -4.9337 2.2047 10 6 4.2668 -5.3668 3.4817 11 6 5.5022 -5.8967 3.8680 12 7 6.3278 -5.7864 2.8590 13 7 5.6416 -5.1858 1.7957 14 6 6.1959 -4.8822 0.4741 15 6 2.8554 -1.8497 -0.7393 16 7 2.0300 -0.7124 -1.1849 17 6 1.7719 -0.3836 -2.4662 18 8 1.0715 0.5742 -2.7171 19 6 2.3480 -1.2101 -3.5870 20 16 1.8179 -0.5247 -5.1761 21 6 2.6122 -1.6501 -6.2749 22 1 3.2077 -2.4602 -5.8806 23 6 2.4716 -1.4961 -7.6471 24 7 1.7445 -0.5097 -8.1276 25 14 3.3130 -2.6896 -8.8120 26 1 2.8188 -4.0657 -8.5529 27 1 3.0087 -2.3097 -10.2149 28 1 4.7812 -2.6417 -8.5941 29 1 -0.3633 -1.0276 -0.0079 30 1 -0.3633 0.5070 0.8938 31 1 -0.3633 0.5206 -0.8861 32 1 2.9684 -0.2807 1.6162 33 1 1.2973 -0.7877 2.0212 34 1 4.3219 -2.5183 1.1974 35 1 2.3189 -4.6060 1.7607 36 1 3.3947 -4.5959 0.3427 37 1 3.3790 -5.3127 4.0942 38 1 5.7343 -6.3241 4.8323 39 1 6.6273 -3.8813 0.4822 40 1 6.9698 -5.6094 0.2289 41 1 5.4029 -4.9300 -0.2723 42 1 2.7039 -2.7079 -1.3941 43 1 3.9085 -1.5690 -0.7181 44 1 3.4363 -1.1929 -3.5288 45 1 1.9956 -2.2377 -3.4988 46 1 1.6465 -0.4018 -9.0866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331958104.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:47 Heat of formation + Delta-G solvation = 50.786626 kcal Electronic energy + Delta-G solvation = -26569.680513 eV Core-core repulsion = 22815.444534 eV Total energy + Delta-G solvation = -3754.235979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.54856 -40.22069 -37.86648 -35.64798 -33.51565 -32.48077 -32.24231 -31.56068 -29.14584 -28.71142 -27.06590 -25.98194 -25.54943 -25.28051 -22.56689 -21.47895 -21.03323 -20.12276 -19.06240 -17.77064 -17.27897 -16.71594 -16.52181 -15.90518 -15.71424 -15.00891 -14.87552 -14.85331 -14.73893 -14.12042 -14.02993 -13.96860 -13.42519 -13.34011 -13.21982 -13.04729 -12.98172 -12.74105 -12.66255 -12.59208 -12.47858 -12.07905 -11.84655 -11.60789 -11.14057 -11.08716 -11.07848 -10.93691 -10.81686 -10.78630 -9.88007 -9.68050 -9.44992 -9.11004 -9.00290 -8.80476 -8.57737 -8.29641 -6.55917 -6.26444 -3.97733 1.48489 2.17514 2.52338 2.81446 2.99958 3.18847 3.20285 3.24716 3.48570 3.73710 4.11661 4.14919 4.21432 4.26080 4.36649 4.57546 4.68029 4.76461 4.84532 4.92409 4.96747 5.02343 5.05750 5.08497 5.14068 5.25395 5.35606 5.38670 5.43188 5.44745 5.54912 5.59530 5.67750 5.74062 5.80877 5.84035 6.03028 6.04808 6.26247 6.34686 6.39786 6.51525 6.66944 6.74700 7.39577 7.53374 7.60865 8.29364 8.50823 9.18454 10.80874 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010551 B = 0.002702 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.021545 B =10361.771981 C =12738.973479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 H 0.075 0.925 4 C -0.113 4.113 5 C 0.076 3.924 6 H 0.098 0.902 7 N -0.666 5.666 8 C 0.120 3.880 9 C 0.084 3.916 10 C -0.253 4.253 11 C 0.043 3.957 12 N -0.296 5.296 13 N -0.371 5.371 14 C 0.095 3.905 15 C 0.074 3.926 16 N -0.619 5.619 17 C 0.549 3.451 18 O -0.510 6.510 19 C -0.147 4.147 20 S -0.058 6.058 21 C -0.537 4.537 22 H 0.071 0.929 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.282 1.282 28 H -0.274 1.274 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.344 0.656 35 H 0.103 0.897 36 H 0.047 0.953 37 H 0.148 0.852 38 H 0.183 0.817 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.467 -8.540 23.947 25.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.031 3.969 3 H 0.093 0.907 4 C -0.151 4.151 5 C -0.035 4.035 6 H 0.116 0.884 7 N -0.297 5.297 8 C -0.010 4.010 9 C -0.044 4.044 10 C -0.283 4.283 11 C -0.143 4.143 12 N -0.118 5.118 13 N -0.154 5.154 14 C -0.047 4.047 15 C -0.051 4.051 16 N -0.357 5.357 17 C 0.337 3.663 18 O -0.384 6.384 19 C -0.298 4.298 20 S 0.168 5.832 21 C -0.685 4.685 22 H 0.089 0.911 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.207 1.207 28 H -0.199 1.199 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.163 0.837 35 H 0.121 0.879 36 H 0.065 0.935 37 H 0.165 0.835 38 H 0.200 0.800 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.234 -7.143 23.328 24.762 hybrid contribution 1.027 -1.951 -1.111 2.469 sum 5.261 -9.094 22.216 24.575 Atomic orbital electron populations 1.22154 0.94648 1.02250 1.03112 1.21543 0.94909 0.96477 0.84015 0.90731 1.22692 1.02178 0.93765 0.96477 1.22776 0.95137 0.96031 0.89570 0.88399 1.60565 1.07150 1.04157 1.57837 1.20575 0.96305 0.87380 0.96780 1.20890 0.86884 1.00651 0.95925 1.21250 1.00282 1.11166 0.95580 1.23856 0.92013 0.99951 0.98450 1.77386 1.20580 1.18418 0.95405 1.48524 1.08032 1.47073 1.11763 1.21909 1.00757 1.02753 0.79264 1.22960 0.95353 0.90227 0.96604 1.48473 1.51842 1.30376 1.05015 1.20008 0.80099 0.84781 0.81373 1.90699 1.37000 1.28189 1.82485 1.23514 1.03651 1.02405 1.00195 1.85421 1.66860 1.40387 0.90492 1.22796 1.36560 1.16019 0.93119 0.91085 1.24990 0.95209 0.95985 0.97344 1.70004 1.36982 1.29347 1.13838 0.86229 0.79626 0.80508 0.79172 1.19939 1.20744 1.19943 0.92688 0.91935 0.90669 0.90193 0.89480 0.83675 0.87927 0.93463 0.83450 0.80031 0.90489 0.89016 0.89487 0.90559 0.91559 0.89542 0.89545 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.07 37.16 0.34 -1.55 16 2 C 0.13 1.52 3.49 -66.95 -0.23 1.28 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.11 -0.89 6.20 -24.89 -0.15 -1.04 16 5 C 0.08 0.56 3.37 -65.68 -0.22 0.34 16 6 H 0.10 0.71 7.83 -51.93 -0.41 0.31 16 7 N -0.67 -4.38 6.40 -105.85 -0.68 -5.06 16 8 C 0.12 0.75 5.72 -4.98 -0.03 0.72 16 9 C 0.08 0.69 6.44 -82.26 -0.53 0.16 16 10 C -0.25 -2.10 10.72 -40.01 -0.43 -2.53 16 11 C 0.04 0.37 12.02 -17.37 -0.21 0.17 16 12 N -0.30 -3.20 12.58 30.62 0.39 -2.81 16 13 N -0.37 -3.35 4.01 -63.89 -0.26 -3.60 16 14 C 0.09 0.58 11.27 59.84 0.67 1.25 16 15 C 0.07 0.71 6.29 -2.65 -0.02 0.69 16 16 N -0.62 -8.34 3.08 -163.15 -0.50 -8.85 16 17 C 0.55 10.20 7.65 -10.98 -0.08 10.11 16 18 O -0.51 -11.41 14.74 5.55 0.08 -11.33 16 19 C -0.15 -2.92 5.17 36.01 0.19 -2.74 16 20 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 21 C -0.54 -15.03 9.50 30.94 0.29 -14.73 16 22 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -25.85 13.22 55.49 0.73 -25.11 16 25 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.13 6.73 -51.93 -0.35 0.78 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.61 7.83 -51.93 -0.41 0.20 16 34 H 0.34 2.23 8.18 -39.29 -0.32 1.91 16 35 H 0.10 0.58 8.09 -51.93 -0.42 0.16 16 36 H 0.05 0.27 7.23 -51.93 -0.38 -0.10 16 37 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.18 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.40 7.14 -51.93 -0.37 0.03 16 42 H 0.08 0.72 7.47 -51.93 -0.39 0.33 16 43 H 0.07 0.57 7.74 -51.93 -0.40 0.17 16 44 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 45 H 0.09 1.59 7.83 -51.92 -0.41 1.18 16 46 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 393.18 15.07 5.93 5.93 Total: -1.00 -35.64 393.18 -9.25 -44.89 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.20 Total: -0.43 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -0.51 Total: -5.87 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.32 Total: -45.43 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.64 -9.25 -44.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331958104.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.676 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds