Wall clock time and date at job start Tue Mar 31 2020 21:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.87254 * 2 1 4 4 C 1.54320 * 110.01186 * 121.09463 * 2 1 3 5 5 C 1.55164 * 102.94013 * 97.29825 * 4 2 1 6 6 H 1.08999 * 111.00403 * 277.39077 * 5 4 2 7 7 N 1.46900 * 111.00411 * 153.57873 * 5 4 2 8 8 C 1.46900 * 111.00192 * 154.99929 * 7 5 4 9 9 C 1.50691 * 109.47268 * 179.97438 * 8 7 5 10 10 C 1.35324 * 126.12500 * 95.02841 * 9 8 7 11 11 C 1.39865 * 107.91808 * 179.97438 * 10 9 8 12 12 N 1.30838 * 108.20463 * 359.97438 * 11 10 9 13 13 N 1.34949 * 126.13133 * 274.71241 * 9 8 7 14 14 C 1.46496 * 126.03261 * 0.04223 * 13 9 8 15 15 C 1.54686 * 101.67477 * 35.33603 * 5 4 2 16 16 N 1.47025 * 109.88153 * 238.98401 * 2 1 3 17 17 C 1.34777 * 125.65000 * 59.33463 * 16 2 1 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 2 19 19 C 1.50702 * 119.99928 * 180.27553 * 17 16 2 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47035 * 59.99524 * 25 23 21 27 27 H 1.48499 * 109.47381 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46580 * 299.99884 * 25 23 21 29 29 H 1.08996 * 109.46794 * 179.55948 * 1 2 3 30 30 H 1.08994 * 109.47068 * 299.56225 * 1 2 3 31 31 H 1.08998 * 109.46745 * 59.56428 * 1 2 3 32 32 H 1.08996 * 110.72212 * 215.65865 * 4 2 1 33 33 H 1.08997 * 110.71947 * 338.75982 * 4 2 1 34 34 H 1.00902 * 111.00118 * 278.95487 * 7 5 4 35 35 H 1.08998 * 109.47049 * 300.00039 * 8 7 5 36 36 H 1.09000 * 109.46658 * 59.99711 * 8 7 5 37 37 H 1.07996 * 126.03737 * 359.97438 * 10 9 8 38 38 H 1.08004 * 125.89956 * 180.02562 * 11 10 9 39 39 H 1.08995 * 109.47578 * 89.99893 * 14 13 9 40 40 H 1.08999 * 109.46747 * 209.99821 * 14 13 9 41 41 H 1.09003 * 109.47474 * 329.99026 * 14 13 9 42 42 H 1.09005 * 110.39048 * 204.36578 * 15 5 4 43 43 H 1.09004 * 110.23918 * 82.11484 * 15 5 4 44 44 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 45 45 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 46 46 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7489 1.2417 5 6 2.3576 -2.1680 0.6903 6 1 1.4523 -2.7743 0.6598 7 7 3.4047 -2.8296 1.4800 8 6 3.2921 -4.2912 1.3842 9 6 4.3805 -4.9337 2.2047 10 6 4.2668 -5.3668 3.4817 11 6 5.5022 -5.8967 3.8680 12 7 6.3278 -5.7864 2.8590 13 7 5.6416 -5.1858 1.7957 14 6 6.1959 -4.8822 0.4741 15 6 2.8554 -1.8497 -0.7393 16 7 2.0300 -0.7124 -1.1849 17 6 1.7719 -0.3836 -2.4662 18 8 1.0715 0.5742 -2.7171 19 6 2.3480 -1.2101 -3.5870 20 16 1.8179 -0.5247 -5.1761 21 6 2.6122 -1.6501 -6.2749 22 1 3.2077 -2.4602 -5.8806 23 6 2.4716 -1.4961 -7.6471 24 7 1.7445 -0.5097 -8.1276 25 14 3.3130 -2.6896 -8.8120 26 1 2.8188 -4.0657 -8.5529 27 1 3.0087 -2.3097 -10.2149 28 1 4.7812 -2.6417 -8.5941 29 1 -0.3633 -1.0276 -0.0079 30 1 -0.3633 0.5070 0.8938 31 1 -0.3633 0.5206 -0.8861 32 1 2.9684 -0.2807 1.6162 33 1 1.2973 -0.7877 2.0212 34 1 4.3219 -2.5183 1.1974 35 1 2.3189 -4.6060 1.7607 36 1 3.3947 -4.5959 0.3427 37 1 3.3790 -5.3127 4.0942 38 1 5.7343 -6.3241 4.8323 39 1 6.6273 -3.8813 0.4822 40 1 6.9698 -5.6094 0.2289 41 1 5.4029 -4.9300 -0.2723 42 1 2.7039 -2.7079 -1.3941 43 1 3.9085 -1.5690 -0.7181 44 1 3.4363 -1.1929 -3.5288 45 1 1.9956 -2.2377 -3.4988 46 1 1.6465 -0.4018 -9.0866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331958104.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:47 Heat of formation + Delta-G solvation = 25.567992 kcal Electronic energy + Delta-G solvation = -26570.774075 eV Core-core repulsion = 22815.444534 eV Total energy + Delta-G solvation = -3755.329541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.13870 -41.29444 -38.99702 -36.42110 -34.60221 -34.08132 -33.37841 -32.23341 -30.30977 -29.71373 -27.68121 -27.57858 -26.80811 -25.90681 -23.52395 -22.09865 -21.78413 -20.71346 -20.35360 -19.56422 -18.14202 -17.74442 -17.26145 -16.91818 -16.88020 -16.49659 -16.18950 -15.90665 -15.60015 -15.38904 -14.80058 -14.66850 -14.54566 -14.33865 -14.22833 -14.03002 -13.84597 -13.61052 -13.46420 -13.21981 -13.20558 -13.17672 -13.05281 -12.97640 -12.87625 -12.62178 -12.32670 -11.91554 -11.76573 -11.59561 -11.51983 -11.14467 -10.89830 -10.30098 -10.29105 -9.77225 -9.54082 -9.37270 -8.69752 -8.36060 -6.14938 0.88893 1.22319 1.42481 1.43699 1.53274 1.56557 1.65891 1.91891 2.05967 2.25733 2.98037 3.03662 3.26983 3.48124 3.56199 3.70891 3.77629 3.88298 4.04590 4.10172 4.12996 4.23106 4.28376 4.34226 4.37518 4.39266 4.43806 4.58883 4.62001 4.69106 4.71954 4.78266 4.83670 4.88828 4.98173 5.06622 5.14944 5.28610 5.33082 5.39226 5.51613 5.77941 5.85466 6.13983 6.17523 6.23013 6.39581 6.78919 7.04855 7.13165 8.72875 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010551 B = 0.002702 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.021545 B =10361.771981 C =12738.973479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 H 0.062 0.938 4 C -0.099 4.099 5 C 0.091 3.909 6 H 0.107 0.893 7 N -0.662 5.662 8 C 0.123 3.877 9 C 0.082 3.918 10 C -0.266 4.266 11 C 0.036 3.964 12 N -0.338 5.338 13 N -0.378 5.378 14 C 0.087 3.913 15 C 0.065 3.935 16 N -0.609 5.609 17 C 0.546 3.454 18 O -0.561 6.561 19 C -0.119 4.119 20 S -0.151 6.151 21 C -0.545 4.545 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.261 1.261 27 H -0.280 1.280 28 H -0.261 1.261 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.032 0.968 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.347 0.653 35 H 0.114 0.886 36 H 0.057 0.943 37 H 0.163 0.837 38 H 0.204 0.796 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.424 -10.631 25.645 28.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 H 0.080 0.920 4 C -0.137 4.137 5 C -0.020 4.020 6 H 0.125 0.875 7 N -0.293 5.293 8 C -0.007 4.007 9 C -0.046 4.046 10 C -0.296 4.296 11 C -0.149 4.149 12 N -0.161 5.161 13 N -0.162 5.162 14 C -0.054 4.054 15 C -0.060 4.060 16 N -0.345 5.345 17 C 0.334 3.666 18 O -0.439 6.439 19 C -0.270 4.270 20 S 0.076 5.924 21 C -0.693 4.693 22 H 0.101 0.899 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.819 3.181 26 H -0.185 1.185 27 H -0.205 1.205 28 H -0.186 1.186 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.106 0.894 33 H 0.124 0.876 34 H 0.166 0.834 35 H 0.132 0.868 36 H 0.075 0.925 37 H 0.180 0.820 38 H 0.221 0.779 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.222 -9.267 25.089 27.251 hybrid contribution 0.741 -1.296 -1.476 2.099 sum 5.964 -10.563 23.614 26.547 Atomic orbital electron populations 1.22103 0.94819 1.02410 1.02350 1.21770 0.94865 0.96408 0.84476 0.91985 1.22633 1.02891 0.93390 0.94819 1.22642 0.95582 0.95904 0.87856 0.87541 1.60544 1.07092 1.04377 1.57238 1.20631 0.96085 0.86873 0.97072 1.21228 0.86951 1.00276 0.96168 1.21561 1.00690 1.11294 0.96043 1.24327 0.92098 0.99486 0.98976 1.77328 1.22075 1.20113 0.96555 1.48760 1.08341 1.46914 1.12149 1.22118 1.01420 1.03191 0.78624 1.23334 0.95590 0.88882 0.98150 1.48390 1.51044 1.31164 1.03862 1.19755 0.79909 0.84151 0.82817 1.90685 1.39380 1.30247 1.83560 1.23304 1.04462 1.02839 0.96426 1.85627 1.68262 1.42638 0.95840 1.23139 1.36487 1.16070 0.93628 0.89887 1.26135 0.95766 0.97884 0.99354 1.70179 1.38747 1.31572 1.14253 0.85011 0.78751 0.78023 0.76268 1.18548 1.20495 1.18600 0.91945 0.89335 0.94827 0.89425 0.87633 0.83369 0.86827 0.92480 0.81962 0.77943 0.89597 0.89212 0.87815 0.89912 0.90066 0.87839 0.87672 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.07 71.98 0.65 -2.85 16 2 C 0.13 2.68 3.49 45.34 0.16 2.84 16 3 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 4 C -0.10 -1.21 6.20 31.78 0.20 -1.01 16 5 C 0.09 0.99 3.37 46.23 0.16 1.15 16 6 H 0.11 1.08 7.83 -2.39 -0.02 1.06 16 7 N -0.66 -6.14 6.40 -488.81 -3.13 -9.27 16 8 C 0.12 1.11 5.72 85.55 0.49 1.60 16 9 C 0.08 1.14 6.44 41.40 0.27 1.41 16 10 C -0.27 -3.85 10.72 21.99 0.24 -3.61 16 11 C 0.04 0.58 12.02 85.23 1.02 1.60 16 12 N -0.34 -6.97 12.58 -57.02 -0.72 -7.69 16 13 N -0.38 -6.17 4.01 -356.05 -1.43 -7.60 16 14 C 0.09 0.89 11.27 127.77 1.44 2.33 16 15 C 0.06 1.02 6.29 86.78 0.55 1.57 16 16 N -0.61 -15.50 3.08 -788.48 -2.43 -17.93 16 17 C 0.55 20.30 7.65 87.66 0.67 20.97 16 18 O -0.56 -26.13 14.74 -3.04 -0.04 -26.17 16 19 C -0.12 -4.68 5.17 71.24 0.37 -4.31 16 20 S -0.15 -8.32 20.57 -56.49 -1.16 -9.49 16 21 C -0.55 -30.64 9.50 67.95 0.65 -30.00 16 22 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 23 C 0.01 0.76 5.49 84.86 0.47 1.22 16 24 N -0.91 -55.60 13.22 21.65 0.29 -55.31 16 25 Si 1.00 42.78 29.55 68.60 2.03 44.81 16 26 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 27 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 28 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.03 1.03 6.73 -2.39 -0.02 1.01 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 1.00 7.83 -2.39 -0.02 0.98 16 34 H 0.35 3.18 8.18 -89.69 -0.73 2.45 16 35 H 0.11 0.82 8.09 -2.39 -0.02 0.80 16 36 H 0.06 0.43 7.23 -2.39 -0.02 0.41 16 37 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 38 H 0.20 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.10 0.67 7.14 -2.39 -0.02 0.65 16 42 H 0.08 1.25 7.47 -2.38 -0.02 1.23 16 43 H 0.08 1.11 7.74 -2.39 -0.02 1.09 16 44 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 45 H 0.11 3.70 7.83 -2.40 -0.02 3.69 16 46 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -81.20 393.18 0.97 -80.23 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.25 Total: 15.52 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 7.32 Total: -7.10 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -7.42 Total: -97.80 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.04 Total: -26.17 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.49 kcal Total: -81.20 0.97 -80.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331958104.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.799 kcal (2) G-P(sol) polarization free energy of solvation -81.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds