Wall clock time and date at job start Tue Mar 31 2020 21:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.87834 * 2 1 4 4 C 1.54378 * 109.84242 * 238.82579 * 2 1 3 5 5 C 1.55151 * 102.92151 * 262.73350 * 4 2 1 6 6 H 1.09000 * 111.00456 * 82.64221 * 5 4 2 7 7 N 1.46901 * 111.00555 * 206.45317 * 5 4 2 8 8 C 1.46893 * 111.00229 * 201.81945 * 7 5 4 9 9 C 1.50701 * 109.47077 * 180.02562 * 8 7 5 10 10 C 1.35315 * 126.13100 * 94.68991 * 9 8 7 11 11 C 1.39867 * 107.92134 * 180.26483 * 10 9 8 12 12 N 1.30834 * 108.20347 * 359.97438 * 11 10 9 13 13 N 1.34954 * 126.12392 * 274.99843 * 9 8 7 14 14 C 1.46499 * 126.03713 * 359.75543 * 13 9 8 15 15 C 1.54908 * 101.61795 * 324.54717 * 5 4 2 16 16 N 1.47020 * 109.88206 * 121.02545 * 2 1 3 17 17 C 1.34777 * 125.64591 * 300.50459 * 16 2 1 18 18 O 1.21281 * 120.00000 * 359.97438 * 17 16 2 19 19 C 1.50701 * 120.00281 * 179.97438 * 17 16 2 20 20 S 1.80996 * 109.47249 * 180.02562 * 19 17 16 21 21 C 1.76206 * 99.99961 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99917 * 359.97438 * 21 20 19 23 23 C 1.38795 * 119.99955 * 180.02562 * 21 20 19 24 24 N 1.31634 * 120.00017 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99773 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47496 * 59.99292 * 25 23 21 27 27 H 1.48504 * 109.46954 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46799 * 299.98680 * 25 23 21 29 29 H 1.09004 * 109.46884 * 300.43601 * 1 2 3 30 30 H 1.08997 * 109.47000 * 60.42782 * 1 2 3 31 31 H 1.08993 * 109.47561 * 180.43588 * 1 2 3 32 32 H 1.09002 * 110.69850 * 144.38735 * 4 2 1 33 33 H 1.08996 * 110.75328 * 21.10255 * 4 2 1 34 34 H 1.00900 * 110.99921 * 325.77535 * 7 5 4 35 35 H 1.09001 * 109.47019 * 59.99970 * 8 7 5 36 36 H 1.09001 * 109.47422 * 299.99871 * 8 7 5 37 37 H 1.07997 * 126.03615 * 0.26007 * 10 9 8 38 38 H 1.08000 * 125.89932 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.46910 * 90.00017 * 14 13 9 40 40 H 1.08991 * 109.47300 * 209.99768 * 14 13 9 41 41 H 1.09005 * 109.47394 * 330.00411 * 14 13 9 42 42 H 1.09002 * 110.36701 * 155.82805 * 15 5 4 43 43 H 1.08998 * 110.36767 * 278.04533 * 15 5 4 44 44 H 1.09005 * 109.46920 * 299.99863 * 19 17 16 45 45 H 1.09002 * 109.46757 * 59.99791 * 19 17 16 46 46 H 0.97003 * 119.99893 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0540 -0.7517 -1.2424 5 6 2.3517 -2.1705 -0.6896 6 1 1.4454 -2.7751 -0.6568 7 7 3.3963 -2.8352 -1.4802 8 6 3.3280 -4.2940 -1.3221 9 6 4.4126 -4.9398 -2.1453 10 6 5.6397 -5.3021 -1.7049 11 6 6.3370 -5.8577 -2.7825 12 7 5.5564 -5.8304 -3.8322 13 7 4.3361 -5.2550 -3.4553 14 6 3.1810 -5.0343 -4.3289 15 6 2.8567 -1.8489 0.7391 16 7 2.0300 -0.7126 1.1848 17 6 1.7743 -0.3821 2.4661 18 8 1.0772 0.5780 2.7172 19 6 2.3546 -1.2056 3.5869 20 16 1.8330 -0.5141 5.1762 21 6 2.6310 -1.6369 6.2751 22 1 3.2236 -2.4491 5.8807 23 6 2.4972 -1.4781 7.6474 24 7 1.7746 -0.4884 8.1280 25 14 3.3438 -2.6680 8.8122 26 1 4.8108 -2.6219 8.5870 27 1 3.0464 -2.2831 10.2153 28 1 2.8473 -4.0447 8.5605 29 1 -0.3633 0.5206 0.8861 30 1 -0.3633 0.5072 -0.8938 31 1 -0.3634 -1.0275 0.0078 32 1 2.9645 -0.2856 -1.6191 33 1 1.2907 -0.7928 -2.0194 34 1 3.3352 -2.5736 -2.4527 35 1 2.3546 -4.6507 -1.6589 36 1 3.4664 -4.5527 -0.2723 37 1 6.0144 -5.1833 -0.6990 38 1 7.3453 -6.2435 -2.7531 39 1 3.2573 -4.0498 -4.7904 40 1 3.1613 -5.7990 -5.1053 41 1 2.2648 -5.0898 -3.7408 42 1 2.7086 -2.7063 1.3957 43 1 3.9095 -1.5678 0.7150 44 1 1.9999 -2.2330 3.5042 45 1 3.4426 -1.1905 3.5232 46 1 1.6813 -0.3772 9.0872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331958105.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:50 Heat of formation + Delta-G solvation = 52.016351 kcal Electronic energy + Delta-G solvation = -26434.255708 eV Core-core repulsion = 22680.073053 eV Total energy + Delta-G solvation = -3754.182654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55007 -40.14241 -37.80331 -35.65174 -33.55518 -32.42220 -32.22896 -31.51013 -29.17945 -28.65090 -27.11333 -26.00602 -25.50314 -25.36082 -22.32167 -21.47557 -20.95717 -20.15468 -19.05840 -17.73202 -17.19925 -16.70939 -16.37601 -15.98389 -15.49775 -15.33543 -14.85750 -14.79872 -14.69559 -14.17434 -14.09959 -13.96963 -13.65747 -13.23670 -13.14783 -13.00364 -12.97336 -12.74309 -12.67950 -12.53421 -12.42603 -11.98561 -11.75270 -11.36439 -11.25753 -11.03404 -11.02945 -10.92864 -10.82441 -10.75923 -9.81686 -9.67074 -9.37096 -9.05194 -9.04409 -8.81485 -8.50249 -8.23088 -6.49556 -6.20782 -3.91493 1.46909 2.14639 2.53259 2.87904 3.07224 3.24203 3.25600 3.29547 3.53062 3.77395 4.04218 4.14961 4.21005 4.27273 4.35930 4.52940 4.66211 4.70315 4.80471 4.92902 4.97972 5.05042 5.08627 5.14252 5.15636 5.30291 5.36837 5.41767 5.46641 5.49026 5.55725 5.61595 5.68875 5.74077 5.86494 5.89987 6.00848 6.14780 6.25576 6.35267 6.41383 6.54890 6.66248 6.75442 7.38240 7.59973 7.68878 8.35827 8.57697 9.24368 10.86568 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011360 B = 0.002524 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.155915 B =11090.217566 C =13274.077498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.076 0.924 4 C -0.128 4.128 5 C 0.073 3.927 6 H 0.066 0.934 7 N -0.669 5.669 8 C 0.122 3.878 9 C 0.083 3.917 10 C -0.249 4.249 11 C 0.045 3.955 12 N -0.298 5.298 13 N -0.374 5.374 14 C 0.098 3.902 15 C 0.113 3.887 16 N -0.622 5.622 17 C 0.550 3.450 18 O -0.513 6.513 19 C -0.147 4.147 20 S -0.061 6.061 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.344 0.656 35 H 0.044 0.956 36 H 0.104 0.896 37 H 0.150 0.850 38 H 0.184 0.816 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 -8.622 -26.382 27.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.094 0.906 4 C -0.167 4.167 5 C -0.038 4.038 6 H 0.084 0.916 7 N -0.301 5.301 8 C -0.009 4.009 9 C -0.044 4.044 10 C -0.279 4.279 11 C -0.141 4.141 12 N -0.119 5.119 13 N -0.158 5.158 14 C -0.044 4.044 15 C -0.011 4.011 16 N -0.360 5.360 17 C 0.339 3.661 18 O -0.387 6.387 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.163 0.837 35 H 0.062 0.938 36 H 0.122 0.878 37 H 0.168 0.832 38 H 0.201 0.799 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.803 -7.253 -26.600 27.630 hybrid contribution 0.735 -1.982 0.723 2.234 sum 2.538 -9.235 -25.877 27.592 Atomic orbital electron populations 1.22172 0.94785 1.02156 1.03132 1.21402 0.94678 0.96447 0.83928 0.90603 1.22899 1.02098 0.94508 0.97147 1.22698 0.92379 0.94631 0.94061 0.91644 1.60319 1.49548 1.05665 1.14603 1.20574 0.93252 0.87076 0.99961 1.20883 0.97806 1.00530 0.85156 1.21316 0.94086 1.10973 1.01499 1.23877 1.00003 0.99594 0.90579 1.77367 0.91503 1.19493 1.23576 1.48484 1.12268 1.47758 1.07257 1.21841 0.84750 1.03204 0.94586 1.22222 0.95814 0.89411 0.93694 1.48533 1.52031 1.30615 1.04860 1.19995 0.80007 0.84752 0.81344 1.90691 1.37384 1.28121 1.82542 1.23516 1.03833 1.02439 0.99938 1.85385 1.67000 1.40393 0.90627 1.22814 1.36517 1.15890 0.93080 0.90985 1.24989 0.95245 0.95981 0.97350 1.70011 1.37314 1.29237 1.13751 0.86228 0.79708 0.80502 0.79095 1.19899 1.20829 1.19944 0.90491 0.92117 0.92792 0.89568 0.90073 0.83672 0.93758 0.87772 0.83222 0.79944 0.90699 0.89176 0.89788 0.90662 0.90144 0.89446 0.89265 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.06 37.16 0.34 -1.54 16 2 C 0.14 1.59 3.50 -66.92 -0.23 1.35 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.13 -0.95 5.93 -24.87 -0.15 -1.10 16 5 C 0.07 0.55 3.34 -65.57 -0.22 0.33 16 6 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 7 N -0.67 -4.44 6.38 -105.73 -0.67 -5.12 16 8 C 0.12 0.79 5.74 -4.98 -0.03 0.76 16 9 C 0.08 0.69 6.44 -82.26 -0.53 0.16 16 10 C -0.25 -2.21 10.72 -40.01 -0.43 -2.64 16 11 C 0.04 0.41 12.03 -17.37 -0.21 0.20 16 12 N -0.30 -3.13 12.58 30.62 0.39 -2.74 16 13 N -0.37 -3.16 4.01 -63.88 -0.26 -3.42 16 14 C 0.10 0.45 11.27 59.85 0.67 1.12 16 15 C 0.11 1.20 6.38 -2.53 -0.02 1.19 16 16 N -0.62 -8.71 3.08 -162.99 -0.50 -9.22 16 17 C 0.55 10.46 7.65 -10.99 -0.08 10.38 16 18 O -0.51 -11.63 14.76 5.56 0.08 -11.55 16 19 C -0.15 -3.00 5.16 36.01 0.19 -2.81 16 20 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 21 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 25 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.08 1.15 6.74 -51.93 -0.35 0.80 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.45 7.83 -51.93 -0.41 0.05 16 34 H 0.34 1.94 8.48 -39.29 -0.33 1.61 16 35 H 0.04 0.23 7.19 -51.93 -0.37 -0.14 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.18 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.23 7.15 -51.93 -0.37 -0.14 16 42 H 0.07 0.80 7.48 -51.93 -0.39 0.41 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.65 7.85 -51.91 -0.41 1.24 16 45 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 46 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 393.77 15.07 5.93 5.93 Total: -1.00 -36.12 393.77 -9.27 -45.39 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -7.23 Total: -0.82 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -0.50 Total: -5.51 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.31 Total: -45.91 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.12 -9.27 -45.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331958105.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.404 kcal (2) G-P(sol) polarization free energy of solvation -36.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds