Wall clock time and date at job start Tue Mar 31 2020 21:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.87834 * 2 1 4 4 C 1.54378 * 109.84242 * 238.82579 * 2 1 3 5 5 C 1.55151 * 102.92151 * 262.73350 * 4 2 1 6 6 H 1.09000 * 111.00456 * 82.64221 * 5 4 2 7 7 N 1.46901 * 111.00555 * 206.45317 * 5 4 2 8 8 C 1.46893 * 111.00229 * 201.81945 * 7 5 4 9 9 C 1.50701 * 109.47077 * 180.02562 * 8 7 5 10 10 C 1.35315 * 126.13100 * 94.68991 * 9 8 7 11 11 C 1.39867 * 107.92134 * 180.26483 * 10 9 8 12 12 N 1.30834 * 108.20347 * 359.97438 * 11 10 9 13 13 N 1.34954 * 126.12392 * 274.99843 * 9 8 7 14 14 C 1.46499 * 126.03713 * 359.75543 * 13 9 8 15 15 C 1.54908 * 101.61795 * 324.54717 * 5 4 2 16 16 N 1.47020 * 109.88206 * 121.02545 * 2 1 3 17 17 C 1.34777 * 125.64591 * 300.50459 * 16 2 1 18 18 O 1.21281 * 120.00000 * 359.97438 * 17 16 2 19 19 C 1.50701 * 120.00281 * 179.97438 * 17 16 2 20 20 S 1.80996 * 109.47249 * 180.02562 * 19 17 16 21 21 C 1.76206 * 99.99961 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99917 * 359.97438 * 21 20 19 23 23 C 1.38795 * 119.99955 * 180.02562 * 21 20 19 24 24 N 1.31634 * 120.00017 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99773 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47496 * 59.99292 * 25 23 21 27 27 H 1.48504 * 109.46954 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46799 * 299.98680 * 25 23 21 29 29 H 1.09004 * 109.46884 * 300.43601 * 1 2 3 30 30 H 1.08997 * 109.47000 * 60.42782 * 1 2 3 31 31 H 1.08993 * 109.47561 * 180.43588 * 1 2 3 32 32 H 1.09002 * 110.69850 * 144.38735 * 4 2 1 33 33 H 1.08996 * 110.75328 * 21.10255 * 4 2 1 34 34 H 1.00900 * 110.99921 * 325.77535 * 7 5 4 35 35 H 1.09001 * 109.47019 * 59.99970 * 8 7 5 36 36 H 1.09001 * 109.47422 * 299.99871 * 8 7 5 37 37 H 1.07997 * 126.03615 * 0.26007 * 10 9 8 38 38 H 1.08000 * 125.89932 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.46910 * 90.00017 * 14 13 9 40 40 H 1.08991 * 109.47300 * 209.99768 * 14 13 9 41 41 H 1.09005 * 109.47394 * 330.00411 * 14 13 9 42 42 H 1.09002 * 110.36701 * 155.82805 * 15 5 4 43 43 H 1.08998 * 110.36767 * 278.04533 * 15 5 4 44 44 H 1.09005 * 109.46920 * 299.99863 * 19 17 16 45 45 H 1.09002 * 109.46757 * 59.99791 * 19 17 16 46 46 H 0.97003 * 119.99893 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0540 -0.7517 -1.2424 5 6 2.3517 -2.1705 -0.6896 6 1 1.4454 -2.7751 -0.6568 7 7 3.3963 -2.8352 -1.4802 8 6 3.3280 -4.2940 -1.3221 9 6 4.4126 -4.9398 -2.1453 10 6 5.6397 -5.3021 -1.7049 11 6 6.3370 -5.8577 -2.7825 12 7 5.5564 -5.8304 -3.8322 13 7 4.3361 -5.2550 -3.4553 14 6 3.1810 -5.0343 -4.3289 15 6 2.8567 -1.8489 0.7391 16 7 2.0300 -0.7126 1.1848 17 6 1.7743 -0.3821 2.4661 18 8 1.0772 0.5780 2.7172 19 6 2.3546 -1.2056 3.5869 20 16 1.8330 -0.5141 5.1762 21 6 2.6310 -1.6369 6.2751 22 1 3.2236 -2.4491 5.8807 23 6 2.4972 -1.4781 7.6474 24 7 1.7746 -0.4884 8.1280 25 14 3.3438 -2.6680 8.8122 26 1 4.8108 -2.6219 8.5870 27 1 3.0464 -2.2831 10.2153 28 1 2.8473 -4.0447 8.5605 29 1 -0.3633 0.5206 0.8861 30 1 -0.3633 0.5072 -0.8938 31 1 -0.3634 -1.0275 0.0078 32 1 2.9645 -0.2856 -1.6191 33 1 1.2907 -0.7928 -2.0194 34 1 3.3352 -2.5736 -2.4527 35 1 2.3546 -4.6507 -1.6589 36 1 3.4664 -4.5527 -0.2723 37 1 6.0144 -5.1833 -0.6990 38 1 7.3453 -6.2435 -2.7531 39 1 3.2573 -4.0498 -4.7904 40 1 3.1613 -5.7990 -5.1053 41 1 2.2648 -5.0898 -3.7408 42 1 2.7086 -2.7063 1.3957 43 1 3.9095 -1.5678 0.7150 44 1 1.9999 -2.2330 3.5042 45 1 3.4426 -1.1905 3.5232 46 1 1.6813 -0.3772 9.0872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331958105.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:49 Heat of formation + Delta-G solvation = 26.221284 kcal Electronic energy + Delta-G solvation = -26435.374266 eV Core-core repulsion = 22680.073053 eV Total energy + Delta-G solvation = -3755.301212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.13891 -41.25266 -38.95217 -36.43711 -34.58172 -34.07899 -33.37500 -32.19073 -30.32864 -29.73106 -27.66123 -27.56316 -26.85998 -25.99968 -23.35003 -22.07998 -21.69571 -20.76851 -20.33050 -19.54704 -18.10053 -17.71587 -17.26043 -16.87785 -16.66546 -16.52274 -16.25599 -15.97257 -15.68676 -15.37409 -14.82094 -14.73418 -14.58608 -14.45103 -14.28706 -14.06173 -13.67741 -13.56834 -13.47481 -13.27705 -13.19137 -13.16661 -13.01847 -12.85602 -12.84047 -12.59986 -12.07487 -12.03241 -11.73925 -11.61078 -11.55211 -11.12404 -10.86436 -10.28509 -10.26685 -9.72925 -9.54674 -9.40004 -8.67434 -8.34073 -6.12705 0.87168 1.24720 1.44556 1.45445 1.55548 1.59013 1.66995 1.89737 2.08639 2.28017 2.99908 3.03955 3.30448 3.40161 3.58403 3.69992 3.74780 3.91063 4.03970 4.07368 4.22448 4.26900 4.35987 4.38575 4.40126 4.41168 4.45777 4.58154 4.64137 4.69071 4.75751 4.82795 4.87971 4.90043 4.91127 5.00224 5.09575 5.27720 5.31325 5.41748 5.51973 5.75915 5.87164 6.14965 6.19973 6.30077 6.42771 6.77020 7.06896 7.15487 8.74910 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011360 B = 0.002524 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.155915 B =11090.217566 C =13274.077498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.130 3.870 3 H 0.063 0.937 4 C -0.112 4.112 5 C 0.089 3.911 6 H 0.078 0.922 7 N -0.671 5.671 8 C 0.126 3.874 9 C 0.085 3.915 10 C -0.272 4.272 11 C 0.036 3.964 12 N -0.335 5.335 13 N -0.376 5.376 14 C 0.087 3.913 15 C 0.102 3.898 16 N -0.612 5.612 17 C 0.547 3.453 18 O -0.561 6.561 19 C -0.120 4.120 20 S -0.150 6.150 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.262 1.262 27 H -0.279 1.279 28 H -0.261 1.261 29 H 0.033 0.967 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.355 0.645 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.155 0.845 38 H 0.201 0.799 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.198 -10.532 -28.441 30.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 H 0.081 0.919 4 C -0.150 4.150 5 C -0.022 4.022 6 H 0.096 0.904 7 N -0.304 5.304 8 C -0.004 4.004 9 C -0.043 4.043 10 C -0.302 4.302 11 C -0.149 4.149 12 N -0.157 5.157 13 N -0.160 5.160 14 C -0.053 4.053 15 C -0.021 4.021 16 N -0.347 5.347 17 C 0.335 3.665 18 O -0.440 6.440 19 C -0.271 4.271 20 S 0.078 5.922 21 C -0.693 4.693 22 H 0.100 0.900 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.187 1.187 27 H -0.204 1.204 28 H -0.185 1.185 29 H 0.052 0.948 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.130 0.870 34 H 0.175 0.825 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.172 0.828 38 H 0.218 0.782 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.124 0.876 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.324 -9.191 -28.741 30.265 hybrid contribution 0.583 -1.375 1.207 1.920 sum 2.907 -10.566 -27.534 29.635 Atomic orbital electron populations 1.22114 0.94690 1.02379 1.02486 1.21696 0.94860 0.96397 0.84417 0.91896 1.22851 1.03211 0.93399 0.95499 1.22500 0.92718 0.95036 0.91910 0.90376 1.60175 1.49222 1.05774 1.15240 1.20580 0.93532 0.86750 0.99553 1.21149 0.97959 0.99945 0.85279 1.21559 0.94821 1.11900 1.01881 1.24267 1.00842 0.99363 0.90407 1.77304 0.92772 1.20996 1.24626 1.48781 1.12409 1.47032 1.07736 1.22165 0.84317 1.04060 0.94727 1.22513 0.95370 0.88146 0.96070 1.48450 1.51099 1.31295 1.03897 1.19702 0.79858 0.84129 0.82782 1.90675 1.39656 1.30040 1.83581 1.23312 1.04436 1.02908 0.96451 1.85559 1.68310 1.42600 0.95779 1.23149 1.36563 1.15980 0.93655 0.89969 1.26134 0.95791 0.97885 0.99315 1.70182 1.38970 1.31395 1.14220 0.85007 0.78742 0.78034 0.76245 1.18664 1.20399 1.18536 0.94815 0.89134 0.91996 0.88785 0.86971 0.82453 0.91697 0.88025 0.82777 0.78193 0.89247 0.89114 0.87563 0.90407 0.90157 0.87684 0.87981 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 9.06 71.98 0.65 -2.74 16 2 C 0.13 2.71 3.50 45.36 0.16 2.87 16 3 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.11 -1.20 5.93 31.80 0.19 -1.01 16 5 C 0.09 0.99 3.34 46.30 0.15 1.15 16 6 H 0.08 0.76 7.87 -2.39 -0.02 0.74 16 7 N -0.67 -6.31 6.38 -488.43 -3.12 -9.43 16 8 C 0.13 1.19 5.74 85.56 0.49 1.68 16 9 C 0.09 1.21 6.44 41.40 0.27 1.48 16 10 C -0.27 -4.49 10.72 21.99 0.24 -4.25 16 11 C 0.04 0.61 12.03 85.24 1.02 1.64 16 12 N -0.33 -6.68 12.58 -57.03 -0.72 -7.40 16 13 N -0.38 -5.56 4.01 -356.03 -1.43 -6.99 16 14 C 0.09 0.55 11.27 127.77 1.44 1.99 16 15 C 0.10 1.92 6.38 86.85 0.55 2.48 16 16 N -0.61 -16.44 3.08 -787.97 -2.43 -18.87 16 17 C 0.55 21.06 7.65 87.66 0.67 21.73 16 18 O -0.56 -26.57 14.76 -3.03 -0.04 -26.61 16 19 C -0.12 -4.92 5.16 71.24 0.37 -4.55 16 20 S -0.15 -8.42 20.57 -56.49 -1.16 -9.59 16 21 C -0.55 -31.34 9.50 67.95 0.65 -30.69 16 22 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 23 C 0.01 0.77 5.49 84.86 0.47 1.24 16 24 N -0.91 -56.24 13.22 21.65 0.29 -55.95 16 25 Si 1.00 43.62 29.55 68.60 2.03 45.64 16 26 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 27 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 29 H 0.03 1.02 6.74 -2.38 -0.02 1.01 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.11 0.62 7.83 -2.39 -0.02 0.60 16 34 H 0.36 2.41 8.48 -89.69 -0.76 1.65 16 35 H 0.07 0.38 7.19 -2.39 -0.02 0.36 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 37 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.20 2.30 8.06 -2.91 -0.02 2.27 16 39 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.11 0.18 7.15 -2.38 -0.02 0.16 16 42 H 0.08 1.45 7.48 -2.39 -0.02 1.44 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.10 3.90 7.85 -2.39 -0.02 3.88 16 45 H 0.10 3.89 8.14 -2.39 -0.02 3.87 16 46 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -82.83 393.77 0.95 -81.87 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.22 Total: 14.30 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 7.32 Total: -6.98 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -7.40 Total: -98.64 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.04 Total: -26.61 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.59 kcal Total: -82.83 0.95 -81.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331958105.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.095 kcal (2) G-P(sol) polarization free energy of solvation -82.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds