Wall clock time and date at job start Tue Mar 31 2020 21:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.32760 * 2 1 4 4 C 1.54908 * 110.36468 * 237.76251 * 2 1 3 5 5 C 1.55153 * 101.58185 * 204.03834 * 4 2 1 6 6 H 1.08994 * 110.72843 * 276.96654 * 5 4 2 7 7 N 1.46900 * 110.72070 * 153.86547 * 5 4 2 8 8 C 1.46902 * 111.00220 * 155.00235 * 7 5 4 9 9 C 1.50701 * 109.47009 * 180.02562 * 8 7 5 10 10 C 1.34671 * 126.58969 * 95.02632 * 9 8 7 11 11 N 1.34121 * 108.02108 * 179.97438 * 10 9 8 12 12 C 1.30504 * 109.25838 * 0.02562 * 11 10 9 13 13 N 1.35040 * 108.69507 * 359.76834 * 12 11 10 14 14 C 1.46505 * 126.39985 * 180.26869 * 13 12 11 15 15 C 1.54327 * 102.93934 * 35.50719 * 5 4 2 16 16 N 1.47011 * 107.27207 * 337.80325 * 15 5 4 17 17 C 1.34777 * 125.64898 * 178.97857 * 16 15 5 18 18 O 1.21285 * 119.99958 * 179.97438 * 17 16 15 19 19 C 1.50695 * 120.00142 * 359.95973 * 17 16 15 20 20 S 1.80998 * 109.47232 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00132 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99611 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00199 * 179.97438 * 21 20 19 24 24 N 1.31631 * 120.00102 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99949 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.46937 * 89.99949 * 25 23 21 27 27 H 1.48502 * 109.46799 * 209.99827 * 25 23 21 28 28 H 1.48494 * 109.46970 * 329.99953 * 25 23 21 29 29 H 1.09003 * 109.47009 * 180.70485 * 1 2 3 30 30 H 1.09005 * 109.46863 * 300.69936 * 1 2 3 31 31 H 1.08992 * 109.47214 * 60.69577 * 1 2 3 32 32 H 1.08998 * 111.00755 * 322.11966 * 4 2 1 33 33 H 1.09009 * 111.00334 * 85.96699 * 4 2 1 34 34 H 1.00900 * 111.00658 * 278.96223 * 7 5 4 35 35 H 1.08999 * 109.46805 * 300.00415 * 8 7 5 36 36 H 1.08998 * 109.46845 * 60.00031 * 8 7 5 37 37 H 1.08001 * 125.99002 * 359.96869 * 10 9 8 38 38 H 1.07997 * 125.65219 * 180.02562 * 12 11 10 39 39 H 1.09003 * 109.46682 * 270.12076 * 14 13 12 40 40 H 1.09003 * 109.47077 * 30.11344 * 14 13 12 41 41 H 1.09000 * 109.47547 * 150.11886 * 14 13 12 42 42 H 1.09003 * 109.88254 * 97.22607 * 15 5 4 43 43 H 1.09002 * 109.88094 * 218.23022 * 15 5 4 44 44 H 1.09001 * 109.47012 * 299.99683 * 19 17 16 45 45 H 1.08995 * 109.47457 * 59.99726 * 19 17 16 46 46 H 0.97001 * 120.00308 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0691 -0.7747 -1.2284 5 6 3.4788 -1.1965 -0.7365 6 1 4.1949 -0.3870 -0.8777 7 7 3.9285 -2.4120 -1.4281 8 6 5.3950 -2.4947 -1.4476 9 6 5.8178 -3.7513 -2.1641 10 6 6.1518 -3.8604 -3.4642 11 7 6.4660 -5.1417 -3.7057 12 6 6.3389 -5.8310 -2.6049 13 7 5.9407 -5.0002 -1.6175 14 6 5.6860 -5.3673 -0.2223 15 6 3.2523 -1.4745 0.7645 16 7 2.0454 -0.7381 1.1675 17 6 1.5007 -0.7373 2.4003 18 8 0.4992 -0.0896 2.6204 19 6 2.1359 -1.5414 3.5052 20 16 1.1782 -1.3370 5.0274 21 6 2.1162 -2.3545 6.1181 22 1 2.9943 -2.8684 5.7557 23 6 1.7273 -2.4946 7.4431 24 7 2.4278 -3.2551 8.2577 25 14 0.2090 -1.6050 8.0699 26 1 -0.9829 -2.4717 7.8876 27 1 0.3783 -1.2928 9.5118 28 1 0.0249 -0.3435 7.3086 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8837 31 1 -0.3633 0.5029 -0.8961 32 1 1.4521 -1.6476 -1.4414 33 1 2.1380 -0.1247 -2.1008 34 1 3.5253 -3.2366 -1.0091 35 1 5.8009 -1.6266 -1.9670 36 1 5.7714 -2.5150 -0.4249 37 1 6.1643 -3.0570 -4.1858 38 1 6.5255 -6.8895 -2.4999 39 1 4.6413 -5.6567 -0.1077 40 1 6.3273 -6.2036 0.0562 41 1 5.8998 -4.5149 0.4226 42 1 3.1061 -2.5426 0.9257 43 1 4.1107 -1.1271 1.3395 44 1 2.1518 -2.5947 3.2251 45 1 3.1559 -1.1933 3.6678 46 1 2.1558 -3.3533 9.1836 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331958530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:03 Heat of formation + Delta-G solvation = 13.457986 kcal Electronic energy + Delta-G solvation = -26675.728685 eV Core-core repulsion = 22919.874015 eV Total energy + Delta-G solvation = -3755.854670 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.97561 -41.33961 -38.99680 -36.38493 -34.82213 -34.69845 -33.43736 -32.15343 -30.32427 -29.50917 -27.87697 -27.79407 -26.73396 -25.73454 -23.33432 -22.38795 -21.94081 -20.85681 -20.47293 -19.49366 -18.24452 -17.87591 -17.58529 -17.14513 -16.71826 -16.62908 -16.21220 -15.90684 -15.68479 -15.61033 -15.06039 -14.88387 -14.54446 -14.50122 -14.20059 -13.91861 -13.85991 -13.69638 -13.57291 -13.47441 -13.37913 -13.24414 -13.06834 -13.00059 -12.92943 -12.63085 -12.37628 -12.02202 -11.89399 -11.72508 -11.19635 -10.91928 -10.71521 -10.56224 -10.50226 -9.78911 -9.52379 -9.23242 -9.03229 -8.54357 -6.25217 0.94054 1.06884 1.29216 1.43534 1.51213 1.52202 1.93033 2.02684 2.22256 2.22894 2.65262 2.84189 3.11863 3.44542 3.48316 3.80633 3.87151 3.92745 3.98148 4.01040 4.09708 4.12327 4.20538 4.26193 4.35163 4.36516 4.42209 4.49496 4.61215 4.67067 4.69096 4.75607 4.77231 4.90538 4.94947 5.06447 5.22872 5.27182 5.43357 5.55455 5.67934 5.81684 5.94099 6.08010 6.22075 6.31120 6.38325 6.91149 7.08991 7.16292 8.57905 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012067 B = 0.002695 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.896663 B =10386.723344 C =12433.281315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.129 3.871 3 H 0.084 0.916 4 C -0.103 4.103 5 C 0.091 3.909 6 H 0.117 0.883 7 N -0.668 5.668 8 C 0.139 3.861 9 C -0.026 4.026 10 C -0.033 4.033 11 N -0.539 5.539 12 C 0.177 3.823 13 N -0.457 5.457 14 C 0.061 3.939 15 C 0.067 3.933 16 N -0.610 5.610 17 C 0.546 3.454 18 O -0.553 6.553 19 C -0.102 4.102 20 S -0.174 6.174 21 C -0.527 4.527 22 H 0.063 0.937 23 C 0.047 3.953 24 N -0.916 5.916 25 Si 0.912 3.088 26 H -0.263 1.263 27 H -0.259 1.259 28 H -0.237 1.237 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.343 0.657 35 H 0.110 0.890 36 H 0.050 0.950 37 H 0.174 0.826 38 H 0.230 0.770 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.471 0.367 -23.346 24.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 H 0.102 0.898 4 C -0.141 4.141 5 C -0.020 4.020 6 H 0.135 0.865 7 N -0.299 5.299 8 C 0.009 3.991 9 C -0.142 4.142 10 C -0.182 4.182 11 N -0.258 5.258 12 C -0.106 4.106 13 N -0.140 5.140 14 C -0.080 4.080 15 C -0.058 4.058 16 N -0.345 5.345 17 C 0.334 3.666 18 O -0.431 6.431 19 C -0.253 4.253 20 S 0.052 5.948 21 C -0.674 4.674 22 H 0.081 0.919 23 C -0.158 4.158 24 N -0.554 5.554 25 Si 0.734 3.266 26 H -0.187 1.187 27 H -0.183 1.183 28 H -0.161 1.161 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.127 0.873 34 H 0.162 0.838 35 H 0.129 0.871 36 H 0.068 0.932 37 H 0.191 0.809 38 H 0.247 0.753 39 H 0.104 0.896 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.201 1.154 -24.003 24.818 hybrid contribution 0.677 -0.962 2.359 2.636 sum 6.878 0.192 -21.644 22.711 Atomic orbital electron populations 1.22061 0.94743 1.01852 1.03030 1.22153 0.94848 0.96227 0.84130 0.89825 1.22819 0.94775 1.00476 0.96072 1.22615 0.97915 0.93824 0.87631 0.86540 1.60629 1.07367 1.04495 1.57399 1.20386 0.87642 0.92747 0.98288 1.21285 1.10073 0.87643 0.95149 1.22333 1.06359 0.94656 0.94832 1.70257 1.22402 1.05379 1.27721 1.25501 1.03072 0.99233 0.82764 1.45540 1.49489 1.07845 1.11121 1.22329 1.04137 1.03989 0.77579 1.23108 0.87177 0.96857 0.98636 1.48399 1.28699 1.49081 1.08340 1.19607 0.83480 0.81098 0.82408 1.90655 1.26220 1.44354 1.81863 1.23206 1.03309 1.03587 0.95168 1.84751 1.40625 1.64758 1.04637 1.22420 1.14699 1.32624 0.97684 0.91905 1.25527 0.99468 0.94949 0.95886 1.70004 1.40566 1.38351 1.06460 0.85901 0.79881 0.81342 0.79487 1.18730 1.18319 1.16125 0.93845 0.92823 0.89627 0.90631 0.87273 0.83825 0.87140 0.93150 0.80876 0.75347 0.89594 0.87380 0.89100 0.91090 0.90338 0.87620 0.87483 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 8.66 71.98 0.62 -3.01 16 2 C 0.13 2.46 3.76 45.47 0.17 2.63 16 3 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.10 -1.27 6.19 31.98 0.20 -1.07 16 5 C 0.09 0.95 3.28 46.10 0.15 1.11 16 6 H 0.12 0.89 7.82 -2.39 -0.02 0.88 16 7 N -0.67 -7.02 6.37 -489.45 -3.12 -10.14 16 8 C 0.14 1.35 5.79 85.56 0.50 1.84 16 9 C -0.03 -0.38 6.47 40.95 0.26 -0.12 16 10 C -0.03 -0.63 11.79 83.53 0.98 0.36 16 11 N -0.54 -11.77 11.25 -200.32 -2.25 -14.03 16 12 C 0.18 2.76 12.56 180.26 2.26 5.03 16 13 N -0.46 -5.98 3.15 -537.87 -1.70 -7.68 16 14 C 0.06 0.43 11.01 127.77 1.41 1.84 16 15 C 0.07 1.04 6.21 86.73 0.54 1.58 16 16 N -0.61 -14.50 3.24 -788.16 -2.56 -17.05 16 17 C 0.55 18.71 7.65 87.66 0.67 19.38 16 18 O -0.55 -23.12 13.56 -3.05 -0.04 -23.16 16 19 C -0.10 -3.78 5.35 71.23 0.38 -3.40 16 20 S -0.17 -8.67 18.55 -56.49 -1.05 -9.72 16 21 C -0.53 -29.99 10.04 67.95 0.68 -29.31 16 22 H 0.06 3.75 8.03 -2.91 -0.02 3.73 16 23 C 0.05 2.73 5.50 84.86 0.47 3.19 16 24 N -0.92 -54.73 13.97 21.65 0.30 -54.43 16 25 Si 0.91 44.35 27.74 68.60 1.90 46.25 16 26 H -0.26 -12.48 7.11 99.48 0.71 -11.78 16 27 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 28 H -0.24 -11.55 6.74 99.48 0.67 -10.88 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 1.63 6.00 -2.38 -0.01 1.62 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.08 8.06 -2.39 -0.02 1.06 16 33 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.34 3.92 8.04 -89.69 -0.72 3.20 16 35 H 0.11 0.86 8.08 -2.39 -0.02 0.84 16 36 H 0.05 0.42 7.37 -2.39 -0.02 0.40 16 37 H 0.17 2.76 8.06 -2.91 -0.02 2.73 16 38 H 0.23 1.90 8.06 -2.91 -0.02 1.88 16 39 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.09 0.56 7.30 -2.39 -0.02 0.55 16 42 H 0.07 1.06 7.49 -2.39 -0.02 1.05 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16 45 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 46 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -78.04 388.92 1.01 -77.03 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.22 Total: 12.88 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 9.30 Total: 0.04 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -9.32 Total: -103.32 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.04 Total: -23.16 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.90 Total: 46.25 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.05 Total: -9.72 kcal Total: -78.04 1.01 -77.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331958530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.489 kcal (2) G-P(sol) polarization free energy of solvation -78.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds