Wall clock time and date at job start Tue Mar 31 2020 21:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.87411 * 2 1 4 4 C 1.54329 * 110.01206 * 121.10276 * 2 1 3 5 5 C 1.55156 * 102.94072 * 141.68304 * 4 2 1 6 6 H 1.08996 * 111.00334 * 82.60999 * 5 4 2 7 7 N 1.46901 * 111.00026 * 206.42044 * 5 4 2 8 8 C 1.46900 * 111.00039 * 204.99946 * 7 5 4 9 9 C 1.50697 * 109.47090 * 180.02562 * 8 7 5 10 10 C 1.34674 * 126.59230 * 95.02709 * 9 8 7 11 11 N 1.34131 * 108.02065 * 179.97438 * 10 9 8 12 12 C 1.30497 * 109.25663 * 359.97438 * 11 10 9 13 13 N 1.35043 * 108.69886 * 359.76674 * 12 11 10 14 14 C 1.46500 * 126.39484 * 180.26973 * 13 12 11 15 15 C 1.55124 * 101.48615 * 324.32969 * 5 4 2 16 16 N 1.47025 * 109.88125 * 238.98406 * 2 1 3 17 17 C 1.34774 * 125.64574 * 61.45183 * 16 2 1 18 18 O 1.21279 * 120.00472 * 359.97438 * 17 16 2 19 19 C 1.50706 * 120.00020 * 180.02562 * 17 16 2 20 20 S 1.81002 * 109.47200 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99878 * 179.97438 * 20 19 17 22 22 H 1.08006 * 120.00031 * 359.97438 * 21 20 19 23 23 C 1.38801 * 120.00096 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99737 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99933 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47409 * 89.99815 * 25 23 21 27 27 H 1.48504 * 109.46732 * 209.99538 * 25 23 21 28 28 H 1.48503 * 109.47095 * 329.99265 * 25 23 21 29 29 H 1.09005 * 109.46876 * 179.56068 * 1 2 3 30 30 H 1.08995 * 109.46800 * 299.55804 * 1 2 3 31 31 H 1.08997 * 109.47253 * 59.56293 * 1 2 3 32 32 H 1.08998 * 110.71315 * 260.04478 * 4 2 1 33 33 H 1.08999 * 110.71847 * 23.13944 * 4 2 1 34 34 H 1.00902 * 110.99850 * 81.04697 * 7 5 4 35 35 H 1.09001 * 109.47091 * 299.99918 * 8 7 5 36 36 H 1.08997 * 109.47008 * 60.00250 * 8 7 5 37 37 H 1.07993 * 125.98720 * 359.96026 * 10 9 8 38 38 H 1.07997 * 125.64806 * 180.02562 * 12 11 10 39 39 H 1.09004 * 109.47071 * 270.11928 * 14 13 12 40 40 H 1.08998 * 109.47538 * 30.12452 * 14 13 12 41 41 H 1.09002 * 109.47219 * 150.12638 * 14 13 12 42 42 H 1.09006 * 110.49792 * 278.45237 * 15 5 4 43 43 H 1.08998 * 110.34245 * 156.06652 * 15 5 4 44 44 H 1.09001 * 109.46953 * 299.99667 * 19 17 16 45 45 H 1.09000 * 109.47318 * 59.99264 * 19 17 16 46 46 H 0.97001 * 119.99701 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0582 -0.7491 1.2416 5 6 3.2919 -1.5108 0.6892 6 1 4.1684 -0.8636 0.6570 7 7 3.5619 -2.7192 1.4797 8 6 4.9754 -3.1071 1.3823 9 6 5.2135 -4.3480 2.2035 10 6 5.2049 -5.6191 1.7586 11 7 5.4598 -6.4250 2.8000 12 6 5.6266 -5.7017 3.8733 13 7 5.4866 -4.3995 3.5438 14 6 5.6023 -3.2558 4.4520 15 6 2.8131 -1.8793 -0.7395 16 7 2.0301 -0.7124 -1.1849 17 6 1.8050 -0.3602 -2.4662 18 8 1.1380 0.6211 -2.7172 19 6 2.3811 -1.1865 -3.5872 20 16 1.9054 -0.4626 -5.1765 21 6 2.6905 -1.5942 -6.2754 22 1 3.2546 -2.4266 -5.8811 23 6 2.5849 -1.4154 -7.6478 24 7 1.8979 -0.4007 -8.1283 25 14 3.4167 -2.6155 -8.8127 26 1 2.4803 -3.7221 -9.1352 27 1 3.7973 -1.9091 -10.0623 28 1 4.6339 -3.1693 -8.1668 29 1 -0.3633 -1.0277 -0.0079 30 1 -0.3633 0.5069 0.8939 31 1 -0.3633 0.5206 -0.8860 32 1 2.3558 -0.0452 2.0189 33 1 1.3093 -1.4450 1.6196 34 1 2.9586 -3.4775 1.1984 35 1 5.2261 -3.3076 0.3406 36 1 5.6011 -2.2972 1.7573 37 1 5.0242 -5.9342 0.7416 38 1 5.8449 -6.0812 4.8605 39 1 4.6252 -3.0309 4.8794 40 1 6.3023 -3.4965 5.2521 41 1 5.9656 -2.3889 3.9000 42 1 2.1853 -2.7701 -0.7138 43 1 3.6682 -2.0359 -1.3971 44 1 3.4680 -1.2021 -3.5055 45 1 1.9973 -2.2046 -3.5226 46 1 1.8238 -0.2759 -9.0874 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331958531.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:06 Heat of formation + Delta-G solvation = 33.850479 kcal Electronic energy + Delta-G solvation = -26414.474670 eV Core-core repulsion = 22659.504284 eV Total energy + Delta-G solvation = -3754.970386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.39178 -40.15951 -37.81574 -35.58989 -34.29392 -32.44456 -32.18023 -31.42559 -28.96612 -28.58334 -27.34818 -25.93386 -25.50502 -25.08403 -22.22671 -21.75213 -21.23102 -20.28273 -18.99433 -17.68591 -17.54808 -16.95431 -16.45860 -15.94202 -15.83923 -14.91228 -14.81783 -14.79621 -14.66177 -14.34043 -14.16826 -13.83792 -13.61785 -13.33274 -13.23873 -13.12635 -13.08465 -12.87994 -12.65855 -12.54193 -12.39269 -12.01038 -11.84628 -11.64223 -11.09485 -11.04810 -11.03158 -10.88546 -10.77091 -10.24282 -9.91160 -9.83272 -9.43122 -9.07987 -8.98328 -8.67805 -8.53133 -8.25442 -6.52146 -6.23102 -3.93964 1.63757 2.43952 2.81881 2.88394 3.04103 3.21539 3.24423 3.29225 3.53769 3.80531 4.18671 4.19839 4.30712 4.31507 4.40337 4.41176 4.63150 4.69921 4.80222 4.94089 4.97059 5.00693 5.05768 5.10016 5.12100 5.17186 5.31305 5.38562 5.42523 5.48433 5.59199 5.61610 5.67261 5.74155 5.86123 6.00428 6.06542 6.09916 6.27419 6.38874 6.49184 6.54550 6.82555 6.86492 7.57864 7.65013 7.76035 8.33601 8.54657 9.22191 10.84309 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011418 B = 0.002504 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.592587 B =11180.248914 C =13320.542867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 H 0.074 0.926 4 C -0.113 4.113 5 C 0.075 3.925 6 H 0.095 0.905 7 N -0.673 5.673 8 C 0.131 3.869 9 C -0.022 4.022 10 C -0.019 4.019 11 N -0.494 5.494 12 C 0.179 3.821 13 N -0.450 5.450 14 C 0.075 3.925 15 C 0.075 3.925 16 N -0.620 5.620 17 C 0.549 3.451 18 O -0.512 6.512 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.350 0.650 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.168 0.832 38 H 0.204 0.796 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.876 -5.152 28.159 29.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.092 0.908 4 C -0.151 4.151 5 C -0.036 4.036 6 H 0.113 0.887 7 N -0.304 5.304 8 C 0.002 3.998 9 C -0.137 4.137 10 C -0.169 4.169 11 N -0.212 5.212 12 C -0.103 4.103 13 N -0.133 5.133 14 C -0.067 4.067 15 C -0.051 4.051 16 N -0.358 5.358 17 C 0.338 3.662 18 O -0.386 6.386 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.170 0.830 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.186 0.814 38 H 0.220 0.780 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.961 -3.942 28.195 29.087 hybrid contribution 1.314 -1.488 -1.243 2.342 sum 7.275 -5.431 26.952 28.440 Atomic orbital electron populations 1.22136 0.94724 1.02243 1.02962 1.21534 0.94850 0.96429 0.84095 0.90767 1.22705 0.96947 0.99124 0.96341 1.22839 0.98718 0.92193 0.89803 0.88678 1.60605 1.04511 1.07536 1.57778 1.20302 0.90119 0.92398 0.97001 1.21048 1.10899 0.97533 0.84238 1.22159 1.07184 0.88495 0.99029 1.70298 1.18761 1.33612 0.98539 1.24948 1.06001 0.79077 1.00277 1.45253 1.51788 1.08162 1.08054 1.22014 1.03599 0.87720 0.93383 1.23043 0.95809 0.89685 0.96527 1.48488 1.53914 1.28398 1.04973 1.20014 0.79821 0.85005 0.81407 1.90695 1.38330 1.27002 1.82525 1.23516 1.03521 1.02626 1.00095 1.85398 1.69438 1.37919 0.90561 1.22848 1.38110 1.14285 0.93086 0.90981 1.24994 0.95255 0.95969 0.97361 1.70018 1.38412 1.28117 1.13701 0.86167 0.79475 0.80245 0.79617 1.20239 1.20732 1.19683 0.92657 0.92012 0.90808 0.90010 0.90003 0.83032 0.92030 0.90171 0.81441 0.77977 0.90126 0.89732 0.89684 0.91338 0.90449 0.89498 0.89454 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.11 37.16 0.34 -1.60 16 2 C 0.13 1.54 3.45 -66.94 -0.23 1.31 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 4 C -0.11 -0.88 6.18 -24.89 -0.15 -1.04 16 5 C 0.08 0.56 3.40 -65.45 -0.22 0.34 16 6 H 0.10 0.70 7.83 -51.93 -0.41 0.29 16 7 N -0.67 -4.39 6.40 -105.61 -0.68 -5.07 16 8 C 0.13 0.84 5.79 -4.98 -0.03 0.81 16 9 C -0.02 -0.18 6.46 -81.60 -0.53 -0.70 16 10 C -0.02 -0.19 11.79 -17.81 -0.21 -0.40 16 11 N -0.49 -5.45 11.25 -14.67 -0.17 -5.62 16 12 C 0.18 1.42 12.56 -90.38 -1.14 0.28 16 13 N -0.45 -3.09 3.15 -121.37 -0.38 -3.47 16 14 C 0.08 0.25 11.01 59.85 0.66 0.91 16 15 C 0.08 0.75 6.29 -2.42 -0.02 0.74 16 16 N -0.62 -8.58 3.06 -162.87 -0.50 -9.08 16 17 C 0.55 10.42 7.66 -10.98 -0.08 10.34 16 18 O -0.51 -11.63 14.89 5.56 0.08 -11.55 16 19 C -0.15 -3.00 5.16 36.01 0.19 -2.81 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 22 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16 25 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.13 6.87 -51.93 -0.36 0.77 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.64 7.85 -51.93 -0.41 0.23 16 34 H 0.35 2.40 8.18 -39.29 -0.32 2.08 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.46 7.31 -51.93 -0.38 0.08 16 37 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 38 H 0.20 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 41 H 0.08 0.25 7.30 -51.93 -0.38 -0.13 16 42 H 0.07 0.65 7.75 -51.93 -0.40 0.25 16 43 H 0.08 0.78 7.48 -51.93 -0.39 0.39 16 44 H 0.09 1.64 7.85 -51.92 -0.41 1.24 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 393.07 15.07 5.92 5.92 Total: -1.00 -36.47 393.07 -10.67 -47.14 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -7.22 Total: -0.66 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.23 Total: -4.75 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.99 Total: -48.65 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.47 -10.67 -47.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331958531.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.992 kcal (2) G-P(sol) polarization free energy of solvation -36.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds