Wall clock time and date at job start Tue Mar 31 2020 21:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.86719 * 2 1 4 4 C 1.54317 * 109.88396 * 121.01489 * 2 1 3 5 5 C 1.55166 * 102.93867 * 97.38021 * 4 2 1 6 6 H 1.08999 * 111.00279 * 277.38844 * 5 4 2 7 7 N 1.46902 * 111.00042 * 153.57451 * 5 4 2 8 8 C 1.46906 * 110.99573 * 154.99986 * 7 5 4 9 9 C 1.50699 * 109.46990 * 180.02562 * 8 7 5 10 10 C 1.34669 * 126.59120 * 94.68395 * 9 8 7 11 11 N 1.34124 * 108.01946 * 179.87428 * 10 9 8 12 12 C 1.30496 * 109.25818 * 0.40404 * 11 10 9 13 13 N 1.35041 * 108.69713 * 359.74866 * 12 11 10 14 14 C 1.46505 * 126.39582 * 179.97438 * 13 12 11 15 15 C 1.54906 * 101.58173 * 35.50100 * 5 4 2 16 16 N 1.47023 * 110.01073 * 238.90574 * 2 1 3 17 17 C 1.34782 * 125.64988 * 59.46594 * 16 2 1 18 18 O 1.21279 * 119.99663 * 0.02562 * 17 16 2 19 19 C 1.50695 * 119.99778 * 180.02562 * 17 16 2 20 20 S 1.81008 * 109.46799 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99775 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00197 * 0.02562 * 21 20 19 23 23 C 1.38800 * 119.99891 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00022 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99938 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47358 * 89.99511 * 25 23 21 27 27 H 1.48498 * 109.47073 * 210.00000 * 25 23 21 28 28 H 1.48503 * 109.47228 * 330.00002 * 25 23 21 29 29 H 1.09000 * 109.46584 * 298.98398 * 1 2 3 30 30 H 1.09000 * 109.47132 * 58.98548 * 1 2 3 31 31 H 1.08995 * 109.46747 * 178.98169 * 1 2 3 32 32 H 1.08997 * 110.72336 * 339.01757 * 4 2 1 33 33 H 1.08999 * 110.87446 * 215.81137 * 4 2 1 34 34 H 1.00896 * 111.00219 * 278.95625 * 7 5 4 35 35 H 1.09002 * 109.46991 * 299.99841 * 8 7 5 36 36 H 1.09000 * 109.47202 * 60.00133 * 8 7 5 37 37 H 1.08001 * 125.98777 * 0.02943 * 10 9 8 38 38 H 1.08005 * 125.65402 * 179.78050 * 12 11 10 39 39 H 1.08995 * 109.47545 * 270.00646 * 14 13 12 40 40 H 1.08998 * 109.46926 * 30.00818 * 14 13 12 41 41 H 1.09006 * 109.46773 * 150.00455 * 14 13 12 42 42 H 1.09001 * 110.36435 * 81.82454 * 15 5 4 43 43 H 1.08994 * 110.36753 * 204.15198 * 15 5 4 44 44 H 1.08993 * 109.47256 * 299.99732 * 19 17 16 45 45 H 1.08994 * 109.47568 * 60.00635 * 19 17 16 46 46 H 0.96996 * 119.99727 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 1.2437 5 6 2.3558 -2.1674 0.6943 6 1 1.4506 -2.7737 0.6621 7 7 3.4009 -2.8282 1.4874 8 6 3.2885 -4.2899 1.3925 9 6 4.3742 -4.9317 2.2174 10 6 4.2689 -5.3588 3.4902 11 7 5.4541 -5.8692 3.8560 12 6 6.2923 -5.7668 2.8611 13 7 5.6585 -5.1872 1.8190 14 6 6.2376 -4.8872 0.5071 15 6 2.8618 -1.8472 -0.7343 16 7 2.0332 -0.7135 -1.1830 17 6 1.7792 -0.3852 -2.4653 18 8 1.0810 0.5735 -2.7189 19 6 2.3627 -1.2094 -3.5838 20 16 1.8440 -0.5201 -5.1751 21 6 2.6455 -1.6434 -6.2709 22 1 3.2379 -2.4546 -5.8743 23 6 2.5145 -1.4862 -7.6437 24 7 3.1128 -2.3256 -8.4623 25 14 1.4893 -0.0834 -8.3296 26 1 2.3511 1.1100 -8.5253 27 1 0.9030 -0.4896 -9.6321 28 1 0.3986 0.2447 -7.3766 29 1 -0.3632 0.4980 0.8990 30 1 -0.3633 0.5295 -0.8807 31 1 -0.3632 -1.0275 -0.0183 32 1 1.2910 -0.7886 2.0201 33 1 2.9637 -0.2805 1.6230 34 1 4.3188 -2.5171 1.2068 35 1 2.3143 -4.6044 1.7669 36 1 3.3938 -4.5956 0.3516 37 1 3.3844 -5.3027 4.1074 38 1 7.3221 -6.0922 2.8695 39 1 6.6703 -3.8869 0.5210 40 1 7.0149 -5.6162 0.2778 41 1 5.4584 -4.9356 -0.2537 42 1 3.9135 -1.5617 -0.7091 43 1 2.7165 -2.7060 -1.3896 44 1 3.4505 -1.1925 -3.5182 45 1 2.0095 -2.2371 -3.5003 46 1 3.0216 -2.2155 -9.4216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331958532.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:09 Heat of formation + Delta-G solvation = 34.581981 kcal Electronic energy + Delta-G solvation = -26618.460970 eV Core-core repulsion = 22863.522305 eV Total energy + Delta-G solvation = -3754.938665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.39685 -40.29934 -37.94819 -35.66764 -34.28344 -32.51020 -32.32965 -31.40715 -29.05332 -28.68241 -27.36347 -26.00652 -25.68144 -25.10727 -22.63232 -21.76192 -21.08714 -20.29024 -19.14349 -17.79022 -17.52687 -16.83663 -16.62322 -15.97341 -15.92745 -15.16641 -15.06433 -14.95490 -14.77780 -14.14299 -14.01871 -13.90368 -13.52446 -13.40930 -13.34329 -13.20448 -13.15937 -13.03814 -12.84393 -12.61022 -12.54750 -12.17551 -11.96713 -11.67329 -11.32407 -11.16390 -11.06310 -10.85077 -10.67547 -10.26115 -9.92568 -9.91285 -9.57675 -9.06551 -9.01421 -8.69461 -8.61732 -8.56751 -6.99069 -6.35529 -4.07657 1.63987 2.40746 2.59757 2.86353 2.87672 3.10715 3.28326 3.45606 3.51146 3.75230 4.14776 4.24519 4.27825 4.29029 4.37827 4.42955 4.55176 4.63782 4.66390 4.72374 4.88360 4.92010 4.97566 5.03736 5.05761 5.11708 5.22785 5.27509 5.32788 5.41655 5.47192 5.54518 5.65134 5.66964 5.71480 5.89895 5.97890 5.99500 6.19462 6.38353 6.42533 6.49894 6.78684 6.83737 7.50724 7.77130 7.87428 8.33689 8.37670 9.10747 10.73685 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.002595 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.637410 B =10786.634719 C =12722.357683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 H 0.075 0.925 4 C -0.113 4.113 5 C 0.076 3.924 6 H 0.098 0.902 7 N -0.668 5.668 8 C 0.134 3.866 9 C -0.027 4.027 10 C -0.005 4.005 11 N -0.497 5.497 12 C 0.182 3.818 13 N -0.458 5.458 14 C 0.066 3.934 15 C 0.073 3.927 16 N -0.617 5.617 17 C 0.547 3.453 18 O -0.513 6.513 19 C -0.118 4.118 20 S -0.140 6.140 21 C -0.522 4.522 22 H 0.087 0.913 23 C 0.096 3.904 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.342 0.658 35 H 0.099 0.901 36 H 0.041 0.959 37 H 0.169 0.831 38 H 0.204 0.796 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.732 -4.451 23.043 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.035 4.035 6 H 0.116 0.884 7 N -0.298 5.298 8 C 0.005 3.995 9 C -0.142 4.142 10 C -0.154 4.154 11 N -0.214 5.214 12 C -0.100 4.100 13 N -0.142 5.142 14 C -0.076 4.076 15 C -0.052 4.052 16 N -0.355 5.355 17 C 0.336 3.664 18 O -0.387 6.387 19 C -0.268 4.268 20 S 0.086 5.914 21 C -0.669 4.669 22 H 0.105 0.895 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.161 0.839 35 H 0.118 0.882 36 H 0.060 0.940 37 H 0.186 0.814 38 H 0.221 0.779 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.604 -3.338 23.591 23.968 hybrid contribution 0.938 -0.569 -2.072 2.345 sum 3.542 -3.907 21.519 22.155 Atomic orbital electron populations 1.22152 0.94612 1.02323 1.03042 1.21545 0.94903 0.96434 0.84002 0.90723 1.22701 1.02209 0.93891 0.96375 1.22816 0.95318 0.95977 0.89399 0.88423 1.60602 1.06959 1.04730 1.57536 1.20342 0.95990 0.86792 0.96410 1.21050 0.86382 1.09046 0.97677 1.22080 0.97050 1.03148 0.93158 1.70306 1.01715 1.21281 1.28147 1.24955 1.00059 1.01749 0.83214 1.45348 1.10073 1.45662 1.13102 1.22111 1.00360 1.03025 0.82124 1.23040 0.95246 0.90120 0.96824 1.48430 1.51545 1.30607 1.04924 1.19964 0.80204 0.84765 0.81500 1.90695 1.37325 1.28143 1.82488 1.23256 1.03868 1.02354 0.97365 1.84820 1.68291 1.42792 0.95462 1.22285 1.36121 1.15669 0.92855 0.89507 1.24710 0.94693 0.96056 0.95814 1.69930 1.41937 1.36171 1.03626 0.86736 0.82404 0.82526 0.80208 1.19162 1.19875 1.15897 0.91856 0.90799 0.92622 0.89477 0.90175 0.83864 0.88241 0.94044 0.81367 0.77942 0.90214 0.89080 0.89566 0.91475 0.90507 0.88855 0.88793 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.06 37.16 0.34 -1.47 16 2 C 0.13 1.46 3.49 -66.95 -0.23 1.23 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.11 -0.87 6.19 -24.89 -0.15 -1.02 16 5 C 0.08 0.55 3.38 -65.56 -0.22 0.33 16 6 H 0.10 0.71 7.83 -51.93 -0.41 0.31 16 7 N -0.67 -4.38 6.40 -105.72 -0.68 -5.06 16 8 C 0.13 0.86 5.78 -4.97 -0.03 0.83 16 9 C -0.03 -0.22 6.47 -81.60 -0.53 -0.75 16 10 C -0.01 -0.05 11.79 -17.81 -0.21 -0.26 16 11 N -0.50 -5.43 11.25 -14.67 -0.16 -5.60 16 12 C 0.18 1.47 12.56 -90.38 -1.14 0.34 16 13 N -0.46 -3.25 3.15 -121.36 -0.38 -3.63 16 14 C 0.07 0.27 11.01 59.85 0.66 0.93 16 15 C 0.07 0.67 6.29 -2.53 -0.02 0.66 16 16 N -0.62 -7.96 3.08 -163.02 -0.50 -8.46 16 17 C 0.55 9.67 7.65 -10.99 -0.08 9.59 16 18 O -0.51 -10.88 14.77 5.56 0.08 -10.80 16 19 C -0.12 -2.24 5.16 36.00 0.19 -2.06 16 20 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 21 C -0.52 -14.74 10.04 30.94 0.31 -14.43 16 22 H 0.09 2.55 8.03 -52.49 -0.42 2.13 16 23 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 24 N -0.88 -26.14 13.97 55.49 0.78 -25.36 16 25 Si 0.86 21.50 27.74 -169.99 -4.71 16.78 16 26 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.06 6.77 -51.93 -0.35 0.71 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.60 7.83 -51.93 -0.41 0.19 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.34 2.18 8.18 -39.29 -0.32 1.86 16 35 H 0.10 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.04 0.25 7.38 -51.93 -0.38 -0.13 16 37 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.20 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.09 0.34 7.30 -51.93 -0.38 -0.04 16 42 H 0.07 0.56 7.75 -51.93 -0.40 0.16 16 43 H 0.08 0.71 7.48 -51.93 -0.39 0.32 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.09 1.67 7.85 -51.92 -0.41 1.26 16 46 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 390.14 15.07 5.88 5.88 Total: -1.00 -35.59 390.14 -10.16 -45.75 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -7.25 Total: -0.61 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -1.22 Total: -3.41 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.95 Total: -48.11 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.78 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.59 -10.16 -45.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331958532.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.335 kcal (2) G-P(sol) polarization free energy of solvation -35.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds